TCONS_00058169 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058169
Unique NameTCONS_00058169
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length741

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058169 ID=TCONS_00058169|Name=TCONS_00058169|organism=Clytia hemisphaerica|type=transcript|length=741bp
TTCAACTACTGTTACCATTTTGTTATAGTATTTGAAAAGGCTTTACTAAG
CTACCGAATCATTTTGAGTCCAAAAGATATGTCCAGTCAAGAAGAAAATA
TTCCTCCTGTTACTGATGGCACCGAGTTGACTTATGACTACTGTATTGTG
ACTGAGACTCAAAACCTAAAGACATAACAACGACGAAAACCTAACAACGT
TACGACCACCTTTTTTACAACGACAAAACACGTATCTTAATGATTTAACT
TTACGCAGATTAGGTGACAGTCAAACAACACaatcttcaaaaacaaagag
gATCAACAATATCAACTACGGTGGAAAAAGACTGAAGAAATGTGTTGAAT
GTGATCAATTTGCATTGAGTAACCGCTCTGCAAAGTGCCCCAATGGACAT
CCTTTTCGCATCAAGAGAAAGCCCGTAGAAGCACCTCCTGGGTCAACGTG
CGTGACTACAGTTGATCGAGATTTGAAGAAAAGTgtAAAAACCTTAAATG
AGCATCACCATTGGCATATTGTGACGCTACGAGCAAAACGTCACAAAAAT
GGACTGGAGTTCCGATATGAAGGAACCGAGGGATTCGGAGAGAACTTCAT
AGAGGACCCAACCATAAACTCTGCCATTAAAAGGGCATTTGAGCCTCGAT
TCAAAAGAGGTATTTGATATTATACATCATCTAAGATTCCATCTTATGTT
CACTCGACTAAATTGCCCCAAACATTTGATTGAAATAAGAC
Run BLAST on NCBI

transcript from alignment at scaffold_307:250180..253419-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058169 ID=TCONS_00058169|Name=TCONS_00058169|organism=Clytia hemisphaerica|type=transcript|length=3240bp|location=Sequence derived from alignment at scaffold_307:250180..253419- (Clytia hemisphaerica)
TTCAACTACTGTTACCATTTTGTTATAGTATTTGAAAAGGCTTTACTAAG
CTACCGAATCATTTTGAGTCCAAAAGATATGTCCAGTCAAGAAGAAAATA
TTCCTCCTGTTACTGATGGTAAGTTGATGTTGTTTATAAACATATTTTGA
TTTTAGTCCTGGATTTATTTGATTTTTTTTAACATTTTGATCCTTTTGTT
TTCACCTAAAATGCATGTAGAACATCCTGAGACCTAAATTTTGGTGTTAA
AATTATCAAAAGTAAGTTTTAACGAGTGCTTATGTTTATTTTATACAATC
AAGTTTGAGAAATGTTTAAAATTGACTAATTTTACCTATAGGCACCGAGT
TGACTTATGACTACTGTATTGTGACTGAGACTCAAAACCTAAAGACATAA
CAACGACGAAAACCTAACAACGTTACGACCACCTTTTTTACAACGACAAA
ACACGTATCTTAATGATTTAACTTTACGCAGATTAGGTACAGAAAGAAAT
ACAGCAAAATATATTTGTTAGCAATGAATTGTGAGCCCAAAGGGATTGAA
ATTAATCTTCTCTTTTTCCTGGGAAAAAGCCTTACTAGCCTTTAGAGCGA
TTGAATGTTATTGAAGAATGAGTGATTCAACTTAATGACCCATCCTGCTT
TGATAGAATTTTACCTTTTCATTTGAATTTTTCCAAAAGTATCAAAAGTA
TCGATTTTTCCTTTCTTCGTTCCTTTGAGCGAGGAATTAGTTTATGTTTA
AAGTTTAGTTTAATCTTAAGTTTTATTACTTTTCTTAGGTGACAGTCAAA
CAACACAATCTTCAAAAACAAAGAGGATCAACAATATCAACTACGGTGGA
AAAAGACTGAAGGTCAGTAAGTTTATTTGCAAGTCTGGGTCCACTAGTGT
AAATCATTAAATCTGAAAAATAACTTTGGGACAATCTTCACTTTTTTTAA
CAAGCTCAACATACTTAACATACTTTGTTAATGGTCAAAAAATGAAGCCG
CTCAAGAGTGAAAATAAAAAATGTTGCCCTTTTTGCACCAGCCATTTTAA
AACTGGCTCTTATTCCTGCAGATTTACATAAAATGAGAGTTGTATAAAAT
AAGCAGGGACTATACATTTCGGTACTGGACCAGCGCTGAAAATGTATACT
TTTTTGTTTTTCTATCTACAAAATATACATTTTCACCTCAATCAAACTAA
CTCGGAATCTGTCTACAAATTATTTCGAACCACCCCTTAGCCTTAGTACC
AGGTATTTTCCAACGTGTTCAGAAGGATTTTTTTATAAGCATAATAATTT
TCAGGAAAAGCTGTTTCCACGTTTTTATTTTACATAGAAATATCATGAAA
TCCCTCAATATTTGGAGTGTGAAGGTTTTAAGCTTTTGTGGTATGACTGA
TCTTTGTAAATAAACGAAAGGGTCATGCACACTTAAGAAAAGCAAAAATC
TAATATTTTACCTCCTACTGTAGGCATTATCGTATCGCTGCCTTAATTCA
AAAGGGGCCTAAGTTCAGGTACCCCCAGTTCATTTTTATGAAATTTGAAT
TTTTTAGCTTTTCTCGATCTCTAGATTATTTGCTTTCTTTTGATGTACAT
ACCAAGTAGTTTTCAAGGTTAAAAAGGCTCAAAACTTCATACTGAAGCTC
TTATAAAAATGATGTTTATTTAATTCAAAAGAGGCCTAAGTCCATCATAT
TTTTAGAATAAAGGGCCAAGTCCACCAAAATAAGTTTGTTAAGTTTTAAA
AAGGCCTAAGTCCAATTGAATTGTGAATGGGCCTTAAGTCCATGCATTGT
AAAAAGTTTAATTTAGTTTTCCTTTATTTTACTGAGATTGTCTTTTCCCT
CTATCTTGAACCTAGATGTAACTGGCTTTATTTTGGAGTGTCACATGTGC
TGGTTTCGAACTTTAAAAGGCAGAATTTAACCCTCACACATTTTCCAAAA
TTCATGTTTAATTCAAAAAAGGCCAAAGTCCACGCTGCAAGATTTACAAA
AATATCTACTTTCCAAAAGAATGCCTTTTTGTTGAAAAAACAAGTTCGAG
CTATGGCTTTCAGAAAACATTTACTTCGAAGCTTATCATCAAAAATGGTT
TCAGAATAAAGGAAAAACTTTGATTGCAATTTTCTCAAAATGACCAAAAT
TGACTTAGGCCCCTTTTGAATTAAGGTAGCGATTATATACCCCCTACTAA
GTATTAAGTAGTGCTTTATCCATCAGACCCTTTCAAAAGGAAAGACTAAA
AATGTTGGATCTCACTCTTTAGTAGGGGGGAAGGGTTATTTTGCAATTTT
TGAAAATTTCAACACCAATAGCATTAATTATGACCCCCCCACCCCTATTT
TATTACTTTTGTCTGTTTTTGCCCCAAAAATGTCAAAAATGTTCATTTTC
CTAGACACAATAACTAAAATCACTGCAATATCACTTTATTATGACCTGCC
CCATTTTTATAGCTTTTTATACTGGTAGTAGTGGTGTGACACATGACTTT
TTTCAGGACACCCTAAGTTTAGCTTGTGTTTGATATTATGTTGTTTTAGT
ATTTTTTGGTGAGTGATAAGATGTTTAACCTTTTTTCCAGAAATGTGTTG
AATGTGATCAATTTGCATTGAGTAACCGCTCTGCAAAGTGCCCCAATGGA
CATCCTTTTCGCATCAAGAGAAAGCCCGTAGAAGCACCTCCTGGGTCAAC
GTGCGTGACTACAGTTGATCGAGATTTGAAGAAAAGTGTGAGTTTTATTT
TCGTGGCTTACTACTCGATAGATGCGAGGGGTCAGTTCATCTTCCTTTTC
CATCAATGATTTTTTCTTTTTTAATGAAAGGAATATAGCTTTGCGTTGCA
TCAGAGTGCTATGTTATTATGTTACCCTTAAAAAATGGCCTGTGTCGCAA
GAAATCAAAATTCAATATTCAATATTCAATATAAATGAATGAATGAATAT
GAAAACTGTATATAATAATTTTTTTTTCAATAGGTAAAAACCTTAAATGA
GCATCACCATTGGCATATTGTGACGCTACGAGCAAAACGTCACAAAAATG
GACTGGAGTTCCGATATGAAGGAACCGAGGGATTCGGAGAGAACTTCATA
GAGGACCCAACCATAAACTCTGCCATTAAAAGGGCATTTGAGCCTCGATT
CAAAAGAGGTATTTGATATTATACATCATCTAAGATTCCATCTTATGTTC
ACTCGACTAAATTGCCCCAAACATTTGATTGAAATAAGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036651XLOC_036651Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058169-exon-scaffold_307-1575043694:253302..253419TCONS_00058169-exon-scaffold_307-1575043694:253302..253419Clytia hemisphaericaexon
TCONS_00058169-exon-scaffold_307-1575043694:252934..253078TCONS_00058169-exon-scaffold_307-1575043694:252934..253078Clytia hemisphaericaexon
TCONS_00058169-exon-scaffold_307-1575043694:252558..252631TCONS_00058169-exon-scaffold_307-1575043694:252558..252631Clytia hemisphaericaexon
TCONS_00058169-exon-scaffold_307-1575043694:250683..250829TCONS_00058169-exon-scaffold_307-1575043694:250683..250829Clytia hemisphaericaexon
TCONS_00058169-exon-scaffold_307-1575043694:250180..250436TCONS_00058169-exon-scaffold_307-1575043694:250180..250436Clytia hemisphaericaexon
TCONS_00058169-exon-scaffold_307-1510915933:253302..253419TCONS_00058169-exon-scaffold_307-1510915933:253302..253419Clytia hemisphaericaexon
TCONS_00058169-exon-scaffold_307-1510915933:252934..253078TCONS_00058169-exon-scaffold_307-1510915933:252934..253078Clytia hemisphaericaexon
TCONS_00058169-exon-scaffold_307-1510915933:252558..252631TCONS_00058169-exon-scaffold_307-1510915933:252558..252631Clytia hemisphaericaexon
TCONS_00058169-exon-scaffold_307-1510915933:250683..250829TCONS_00058169-exon-scaffold_307-1510915933:250683..250829Clytia hemisphaericaexon
TCONS_00058169-exon-scaffold_307-1510915933:250180..250436TCONS_00058169-exon-scaffold_307-1510915933:250180..250436Clytia hemisphaericaexon
TCONS_00058169-exon-scaffold_307-1491911889:253302..253419TCONS_00058169-exon-scaffold_307-1491911889:253302..253419Clytia hemisphaericaexon
TCONS_00058169-exon-scaffold_307-1491911889:252934..253078TCONS_00058169-exon-scaffold_307-1491911889:252934..253078Clytia hemisphaericaexon
TCONS_00058169-exon-scaffold_307-1491911889:252558..252631TCONS_00058169-exon-scaffold_307-1491911889:252558..252631Clytia hemisphaericaexon
TCONS_00058169-exon-scaffold_307-1491911889:250683..250829TCONS_00058169-exon-scaffold_307-1491911889:250683..250829Clytia hemisphaericaexon
TCONS_00058169-exon-scaffold_307-1491911889:250180..250436TCONS_00058169-exon-scaffold_307-1491911889:250180..250436Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_307supercontigscaffold_307:250180..253419 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	3.957	4.76138	6.77987	11.3978	8.44979	7.03042	8.48513	9.974	6.03376	8.28059	0	0	0	0	0	0	0	0	0	0	4.20313	6.56459	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058169 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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