TCONS_00058168 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058168
Unique NameTCONS_00058168
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length596

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058168 ID=TCONS_00058168|Name=TCONS_00058168|organism=Clytia hemisphaerica|type=transcript|length=596bp
TTCAACTACTGTTACCATTTTGTTATAGTATTTGAAAAGGCTTTACTAAG
CTACCGAATCATTTTGAGTCCAAAAGATATGTCCAGTCAAGAAGAAAATA
TTCCTCCTGTTACTGATGGTGACAGTCAAACAACACaatcttcaaaaaca
aagaggATCAACAATATCAACTACGGTGGAAAAAGACTGAAGAAATGTGT
TGAATGTGATCAATTTGCATTGAGTAACCGCTCTGCAAAGTGCCCCAATG
GACATCCTTTTCGCATCAAGAGAAAGCCCGTAGAAGCACCTCCTGGGTCA
ACGTGCGTGACTACAGTTGATCGAGATTTGAAGAAAAGTgtAAAAACCTT
AAATGAGCATCACCATTGGCATATTGTGACGCTACGAGCAAAACGTCACA
AAAATGGACTGGAGTTCCGATATGAAGGAACCGAGGGATTCGGAGAGAAC
TTCATAGAGGACCCAACCATAAACTCTGCCATTAAAAGGGCATTTGAGCC
TCGATTCAAAAGAGGTATTTGATATTATACATCATCTAAGATTCCATCTT
ATGTTCACTCGACTAAATTGCCCCAAACATTTGATTGAAATAAGAC
Run BLAST on NCBI

protein sequence of TCONS_00058168-protein

>TCONS_00058168-protein ID=TCONS_00058168-protein|Name=TCONS_00058168-protein|organism=Clytia hemisphaerica|type=polypeptide|length=173bp
FNYCYHFVIVFEKALLSYRIILSPKDMSSQEENIPPVTDGDSQTTQSSKT
KRINNINYGGKRLKKCVECDQFALSNRSAKCPNGHPFRIKRKPVEAPPGS
TCVTTVDRDLKKSVKTLNEHHHWHIVTLRAKRHKNGLEFRYEGTEGFGEN
FIEDPTINSAIKRAFEPRFKRGI
Run BLAST on NCBI

transcript from alignment at scaffold_307:250180..253419-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058168 ID=TCONS_00058168|Name=TCONS_00058168|organism=Clytia hemisphaerica|type=transcript|length=3240bp|location=Sequence derived from alignment at scaffold_307:250180..253419- (Clytia hemisphaerica)
TTCAACTACTGTTACCATTTTGTTATAGTATTTGAAAAGGCTTTACTAAG
CTACCGAATCATTTTGAGTCCAAAAGATATGTCCAGTCAAGAAGAAAATA
TTCCTCCTGTTACTGATGGTAAGTTGATGTTGTTTATAAACATATTTTGA
TTTTAGTCCTGGATTTATTTGATTTTTTTTAACATTTTGATCCTTTTGTT
TTCACCTAAAATGCATGTAGAACATCCTGAGACCTAAATTTTGGTGTTAA
AATTATCAAAAGTAAGTTTTAACGAGTGCTTATGTTTATTTTATACAATC
AAGTTTGAGAAATGTTTAAAATTGACTAATTTTACCTATAGGCACCGAGT
TGACTTATGACTACTGTATTGTGACTGAGACTCAAAACCTAAAGACATAA
CAACGACGAAAACCTAACAACGTTACGACCACCTTTTTTACAACGACAAA
ACACGTATCTTAATGATTTAACTTTACGCAGATTAGGTACAGAAAGAAAT
ACAGCAAAATATATTTGTTAGCAATGAATTGTGAGCCCAAAGGGATTGAA
ATTAATCTTCTCTTTTTCCTGGGAAAAAGCCTTACTAGCCTTTAGAGCGA
TTGAATGTTATTGAAGAATGAGTGATTCAACTTAATGACCCATCCTGCTT
TGATAGAATTTTACCTTTTCATTTGAATTTTTCCAAAAGTATCAAAAGTA
TCGATTTTTCCTTTCTTCGTTCCTTTGAGCGAGGAATTAGTTTATGTTTA
AAGTTTAGTTTAATCTTAAGTTTTATTACTTTTCTTAGGTGACAGTCAAA
CAACACAATCTTCAAAAACAAAGAGGATCAACAATATCAACTACGGTGGA
AAAAGACTGAAGGTCAGTAAGTTTATTTGCAAGTCTGGGTCCACTAGTGT
AAATCATTAAATCTGAAAAATAACTTTGGGACAATCTTCACTTTTTTTAA
CAAGCTCAACATACTTAACATACTTTGTTAATGGTCAAAAAATGAAGCCG
CTCAAGAGTGAAAATAAAAAATGTTGCCCTTTTTGCACCAGCCATTTTAA
AACTGGCTCTTATTCCTGCAGATTTACATAAAATGAGAGTTGTATAAAAT
AAGCAGGGACTATACATTTCGGTACTGGACCAGCGCTGAAAATGTATACT
TTTTTGTTTTTCTATCTACAAAATATACATTTTCACCTCAATCAAACTAA
CTCGGAATCTGTCTACAAATTATTTCGAACCACCCCTTAGCCTTAGTACC
AGGTATTTTCCAACGTGTTCAGAAGGATTTTTTTATAAGCATAATAATTT
TCAGGAAAAGCTGTTTCCACGTTTTTATTTTACATAGAAATATCATGAAA
TCCCTCAATATTTGGAGTGTGAAGGTTTTAAGCTTTTGTGGTATGACTGA
TCTTTGTAAATAAACGAAAGGGTCATGCACACTTAAGAAAAGCAAAAATC
TAATATTTTACCTCCTACTGTAGGCATTATCGTATCGCTGCCTTAATTCA
AAAGGGGCCTAAGTTCAGGTACCCCCAGTTCATTTTTATGAAATTTGAAT
TTTTTAGCTTTTCTCGATCTCTAGATTATTTGCTTTCTTTTGATGTACAT
ACCAAGTAGTTTTCAAGGTTAAAAAGGCTCAAAACTTCATACTGAAGCTC
TTATAAAAATGATGTTTATTTAATTCAAAAGAGGCCTAAGTCCATCATAT
TTTTAGAATAAAGGGCCAAGTCCACCAAAATAAGTTTGTTAAGTTTTAAA
AAGGCCTAAGTCCAATTGAATTGTGAATGGGCCTTAAGTCCATGCATTGT
AAAAAGTTTAATTTAGTTTTCCTTTATTTTACTGAGATTGTCTTTTCCCT
CTATCTTGAACCTAGATGTAACTGGCTTTATTTTGGAGTGTCACATGTGC
TGGTTTCGAACTTTAAAAGGCAGAATTTAACCCTCACACATTTTCCAAAA
TTCATGTTTAATTCAAAAAAGGCCAAAGTCCACGCTGCAAGATTTACAAA
AATATCTACTTTCCAAAAGAATGCCTTTTTGTTGAAAAAACAAGTTCGAG
CTATGGCTTTCAGAAAACATTTACTTCGAAGCTTATCATCAAAAATGGTT
TCAGAATAAAGGAAAAACTTTGATTGCAATTTTCTCAAAATGACCAAAAT
TGACTTAGGCCCCTTTTGAATTAAGGTAGCGATTATATACCCCCTACTAA
GTATTAAGTAGTGCTTTATCCATCAGACCCTTTCAAAAGGAAAGACTAAA
AATGTTGGATCTCACTCTTTAGTAGGGGGGAAGGGTTATTTTGCAATTTT
TGAAAATTTCAACACCAATAGCATTAATTATGACCCCCCCACCCCTATTT
TATTACTTTTGTCTGTTTTTGCCCCAAAAATGTCAAAAATGTTCATTTTC
CTAGACACAATAACTAAAATCACTGCAATATCACTTTATTATGACCTGCC
CCATTTTTATAGCTTTTTATACTGGTAGTAGTGGTGTGACACATGACTTT
TTTCAGGACACCCTAAGTTTAGCTTGTGTTTGATATTATGTTGTTTTAGT
ATTTTTTGGTGAGTGATAAGATGTTTAACCTTTTTTCCAGAAATGTGTTG
AATGTGATCAATTTGCATTGAGTAACCGCTCTGCAAAGTGCCCCAATGGA
CATCCTTTTCGCATCAAGAGAAAGCCCGTAGAAGCACCTCCTGGGTCAAC
GTGCGTGACTACAGTTGATCGAGATTTGAAGAAAAGTGTGAGTTTTATTT
TCGTGGCTTACTACTCGATAGATGCGAGGGGTCAGTTCATCTTCCTTTTC
CATCAATGATTTTTTCTTTTTTAATGAAAGGAATATAGCTTTGCGTTGCA
TCAGAGTGCTATGTTATTATGTTACCCTTAAAAAATGGCCTGTGTCGCAA
GAAATCAAAATTCAATATTCAATATTCAATATAAATGAATGAATGAATAT
GAAAACTGTATATAATAATTTTTTTTTCAATAGGTAAAAACCTTAAATGA
GCATCACCATTGGCATATTGTGACGCTACGAGCAAAACGTCACAAAAATG
GACTGGAGTTCCGATATGAAGGAACCGAGGGATTCGGAGAGAACTTCATA
GAGGACCCAACCATAAACTCTGCCATTAAAAGGGCATTTGAGCCTCGATT
CAAAAGAGGTATTTGATATTATACATCATCTAAGATTCCATCTTATGTTC
ACTCGACTAAATTGCCCCAAACATTTGATTGAAATAAGAC

Coding sequence (CDS) from alignment at scaffold_307:250180..253419-

>TCONS_00058168 ID=TCONS_00058168|Name=TCONS_00058168|organism=Clytia hemisphaerica|type=CDS|length=2088bp|location=Sequence derived from alignment at scaffold_307:250180..253419- (Clytia hemisphaerica)
GTAAAAACCTTAAATGAGCATCACCATTGGCATATTGTGACGCTACGAGC
AAAACGTCACAAAAATGGACTGGAGTTCCGATATGAAGGAACCGAGGGAT
TCGGAGAGAACTTCATAGAGGACCCAACCATAAACTCTGCCATTAAAAGG
GCATTTGAGCCTCGATTCAAAAGAGGTATTTGAAAATGTGTTGAATGTGA
TCAATTTGCATTGAGTAACCGCTCTGCAAAGTGCCCCAATGGACATCCTT
TTCGCATCAAGAGAAAGCCCGTAGAAGCACCTCCTGGGTCAACGTGCGTG
ACTACAGTTGATCGAGATTTGAAGAAAAGTGTGACAGTCAAACAACACAA
TCTTCAAAAACAAAGAGGATCAACAATATCAACTACGGTGGAAAAAGACT
GAAGTTCAACTACTGTTACCATTTTGTTATAGTATTTGAAAAGGCTTTAC
TAAGCTACCGAATCATTTTGAGTCCAAAAGATATGTCCAGTCAAGAAGAA
AATATTCCTCCTGTTACTGATGGTAAAAACCTTAAATGAGCATCACCATT
GGCATATTGTGACGCTACGAGCAAAACGTCACAAAAATGGACTGGAGTTC
CGATATGAAGGAACCGAGGGATTCGGAGAGAACTTCATAGAGGACCCAAC
CATAAACTCTGCCATTAAAAGGGCATTTGAGCCTCGATTCAAAAGAGGTA
TTTGAAAATGTGTTGAATGTGATCAATTTGCATTGAGTAACCGCTCTGCA
AAGTGCCCCAATGGACATCCTTTTCGCATCAAGAGAAAGCCCGTAGAAGC
ACCTCCTGGGTCAACGTGCGTGACTACAGTTGATCGAGATTTGAAGAAAA
GTGTGACAGTCAAACAACACAATCTTCAAAAACAAAGAGGATCAACAATA
TCAACTACGGTGGAAAAAGACTGAAGTTCAACTACTGTTACCATTTTGTT
ATAGTATTTGAAAAGGCTTTACTAAGCTACCGAATCATTTTGAGTCCAAA
AGATATGTCCAGTCAAGAAGAAAATATTCCTCCTGTTACTGATGGTAAAA
ACCTTAAATGAGCATCACCATTGGCATATTGTGACGCTACGAGCAAAACG
TCACAAAAATGGACTGGAGTTCCGATATGAAGGAACCGAGGGATTCGGAG
AGAACTTCATAGAGGACCCAACCATAAACTCTGCCATTAAAAGGGCATTT
GAGCCTCGATTCAAAAGAGGTATTTGAAAATGTGTTGAATGTGATCAATT
TGCATTGAGTAACCGCTCTGCAAAGTGCCCCAATGGACATCCTTTTCGCA
TCAAGAGAAAGCCCGTAGAAGCACCTCCTGGGTCAACGTGCGTGACTACA
GTTGATCGAGATTTGAAGAAAAGTGTGACAGTCAAACAACACAATCTTCA
AAAACAAAGAGGATCAACAATATCAACTACGGTGGAAAAAGACTGAAGTT
CAACTACTGTTACCATTTTGTTATAGTATTTGAAAAGGCTTTACTAAGCT
ACCGAATCATTTTGAGTCCAAAAGATATGTCCAGTCAAGAAGAAAATATT
CCTCCTGTTACTGATGGTAAAAACCTTAAATGAGCATCACCATTGGCATA
TTGTGACGCTACGAGCAAAACGTCACAAAAATGGACTGGAGTTCCGATAT
GAAGGAACCGAGGGATTCGGAGAGAACTTCATAGAGGACCCAACCATAAA
CTCTGCCATTAAAAGGGCATTTGAGCCTCGATTCAAAAGAGGTATTTGAA
AATGTGTTGAATGTGATCAATTTGCATTGAGTAACCGCTCTGCAAAGTGC
CCCAATGGACATCCTTTTCGCATCAAGAGAAAGCCCGTAGAAGCACCTCC
TGGGTCAACGTGCGTGACTACAGTTGATCGAGATTTGAAGAAAAGTGTGA
CAGTCAAACAACACAATCTTCAAAAACAAAGAGGATCAACAATATCAACT
ACGGTGGAAAAAGACTGAAGTTCAACTACTGTTACCATTTTGTTATAGTA
TTTGAAAAGGCTTTACTAAGCTACCGAATCATTTTGAGTCCAAAAGATAT
GTCCAGTCAAGAAGAAAATATTCCTCCTGTTACTGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036651XLOC_036651Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058168-exon-scaffold_307-1575043694:253302..253419TCONS_00058168-exon-scaffold_307-1575043694:253302..253419Clytia hemisphaericaexon
TCONS_00058168-exon-scaffold_307-1575043694:252558..252631TCONS_00058168-exon-scaffold_307-1575043694:252558..252631Clytia hemisphaericaexon
TCONS_00058168-exon-scaffold_307-1575043694:250683..250829TCONS_00058168-exon-scaffold_307-1575043694:250683..250829Clytia hemisphaericaexon
TCONS_00058168-exon-scaffold_307-1575043694:250180..250436TCONS_00058168-exon-scaffold_307-1575043694:250180..250436Clytia hemisphaericaexon
TCONS_00058168-exon-scaffold_307-1510915933:253302..253419TCONS_00058168-exon-scaffold_307-1510915933:253302..253419Clytia hemisphaericaexon
TCONS_00058168-exon-scaffold_307-1510915933:252558..252631TCONS_00058168-exon-scaffold_307-1510915933:252558..252631Clytia hemisphaericaexon
TCONS_00058168-exon-scaffold_307-1510915933:250683..250829TCONS_00058168-exon-scaffold_307-1510915933:250683..250829Clytia hemisphaericaexon
TCONS_00058168-exon-scaffold_307-1510915933:250180..250436TCONS_00058168-exon-scaffold_307-1510915933:250180..250436Clytia hemisphaericaexon
TCONS_00058168-exon-scaffold_307-1491911889:253302..253419TCONS_00058168-exon-scaffold_307-1491911889:253302..253419Clytia hemisphaericaexon
TCONS_00058168-exon-scaffold_307-1491911889:252558..252631TCONS_00058168-exon-scaffold_307-1491911889:252558..252631Clytia hemisphaericaexon
TCONS_00058168-exon-scaffold_307-1491911889:250683..250829TCONS_00058168-exon-scaffold_307-1491911889:250683..250829Clytia hemisphaericaexon
TCONS_00058168-exon-scaffold_307-1491911889:250180..250436TCONS_00058168-exon-scaffold_307-1491911889:250180..250436Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058168-proteinTCONS_00058168-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_307supercontigscaffold_307:250180..253419 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	1.05164	0	3.8346	0	3.93915	5.27683	2.80195	0.647146	0	0	0	0	0	0	0	0	0	0	7.41114	13.5514	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058168 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top