TCONS_00058160 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00058160
Unique Name	TCONS_00058160
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1948

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_307:157327..164087-

transcript sequence

>TCONS_00058160 ID=TCONS_00058160|Name=TCONS_00058160|organism=Clytia hemisphaerica|type=transcript|length=1948bp
GTGCAAGAGAATAAAAAGTGCAATCTTACTAAAATCTCTCTTGATCAAAT
TACTGTGGGTAATATTTCTGTTACAAAGTTTTTTGAGTGTGTAGTGAGGT
TTACCTTACACAAAGTCAAAACATAAGAGGTTATACTGTTTATACTTTTA
GGGTTATGATGCGATCTTGTTAAACAGCAGTAACTGAAAATAAATCATAG
ACAACAAAATGATCCGGAGTAGTGTCATCAGCAGAAAATCAAAGAGATCA
CAGAAAACAAGAAAGCCAATGGAGGATGTATTATCACAATATGCTGACCT
CATACAACTGAATGAAAACGAGGTTTACAGGCTTGAAAACAAGTGTGAAG
ATTTAGTGGACTTCTCCAAACTGGATGAAAAATGCAGACGTCAGCAATAC
CCTATCTTTGAATTTATcaagactgaaaaaaaattcattcaaaaaataCA
CGCTATCTGTAAAATGGATGACCAATTTCAGCCGTATTTGAAATACAGCA
TGAAATTTGAAGGTTGTGTGGAAAAGATTCGGCAAGTCACCAAAAATCCG
AAGCAAGCAGATGAAGAATTCACGACGTATTTACAGTTTTGTGATAGAAA
GGTTTCGAAATTATCAATATGCGAGGGAATGAAAATACGAGATCTAATGA
GCGATCCCTTGTCAAGAATGATGAAGTACCCAGACCTCCTGCAACGCGTT
CGAAAATACACACAAGAAGAAGATGAAATTCGTTTCCTTGACCTCATTAT
CAGCAAAATCAAAGGCTTTCTACGCAATATGAACACTGAAAAAAGGCGAC
GCCAAGAAAACGTGGAATTACAAAGTTTCGTTCTCCAAGAACTTGATGAT
CAGGATGTTTGGTTTGCTGGAACTGAAGAAATCTTCTGGAGTGCAAAAGA
GTTCTTGAGAGCACCAATGAAGGTTCGAACACGTAACCATAAAAACACAG
TGAAAGAAGAACAACAAAGATGTCTTCTCAAACGTGGACCAATGAGAATC
AGTCTAGAAAACAGACGAAAGCTTGACGTAGAAGCCATTTTGTTCAGTGA
CGTTTTGATAATTGCACGGAATCGAAGAACCAACAAGAAATTGACACTTG
TCAAACAACTCTATTTCTTGGATAAAGTCTTGTTGAAATTGTCTGAAGTT
TCCAGTAATGGCGTTCTACtgatttacaaaaatgaagttGGATTACTGTC
CGAAGTTGTCAAATTGGAAATCTGGGATTATAATGGAGAAGTTAATACAC
GAgatatttggtgtaataaagtgGAAATTGCCAAGAGAGTATACTTATCA
ACGCTCAACGGTACAGGAAGCACACTAGACATCTTCCAACAATGTTACAA
CAAAGCGGACGAACACAAGCGCAAAGAAAAGGAGAAtgaggggttggaaa
atttcaaacgaaCTTCATCATGGCTTTTAGTGGGCGACCGAGTGGAAGCC
TTACGAAAAAGTCGCAACAAACAGAGAAGCATTTCAACTGATAGTTTTAA
GCGAGCTCTTTCTGATCCCAATTTGTTGGAGGGCTTAGACCAACTACCGG
AAGAAGAAGGGGAAAGTCCCAGAAATGGGGAAATTACCCCTGAACCACCA
CAAATAATAATTGTCCCagaagagaagaaatttttatcGCTACGTTTGAA
AAAATCAGCGAGCAAAATGACTGTGATAAAGAAATTTAGTTTGGATAATT
CACCGAAGTCGACATTTTTCGTCCCAGAGGAAGAGGACTTTGAAGAAGTA
CCACGGAGGAGATCGAAAAGTTTCGACCCTCCATCGGAGCGTGCGGAACA
AAGCGCAGATACGACATCACAAGATTCACACGATACTGCTTTGTAAAAGA
AGACTAAACTAAACCATCATTGATTAGATTTCTTTTATTATTAGTATCTA
TTTTTATAGAATATTCCCAAAGttcatcttttttataagaaatactTT

Run BLAST on NCBI

transcript from alignment at scaffold_307:157327..164087-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00058160 ID=TCONS_00058160|Name=TCONS_00058160|organism=Clytia hemisphaerica|type=transcript|length=6761bp|location=Sequence derived from alignment at scaffold_307:157327..164087- (Clytia hemisphaerica)
GTGCAAGAGAATAAAAAGTGCAATCTTACTAAAATCTCTCTTGATCAAAT
TACTGTGGGTAATATTTCTGTTACAAAGTTTTTTGAGTGTGTAGTGAGGT
TTACCTTACACAAAGTCAAAACATAAGAGGTTATACTGTTTATACTTTTA
GGGTTATGATGCGATCTTGTTAAACAGCAGTAACTGAAAATAAATCATAG
ACAACAAAATGATCCGGAGTAGTGTCATCAGCAGAAAATCAAAGAGATCA
CAGAAAACAAGAAAGGTAATAATTTCTATGGCAACCATTATTTGGTCCAA
GAATAATTTCTTACTGTCAATCCCACTGAATTTGGACTAGAGAAGAATCT
TCGACCTTTCTCAAGCACGACAAAGTGAAGCTTTAATTTTGCCTCGCATT
TTGAAATTTTGTTTGAAAACACGCGGGTCGTTTGTTTCGGATGGGAAATA
AGTGGCATTTTCCATCCAGGAGTTTCAGATCTAGCCCATTTAGGGCTTGA
AATCAATGGTCAATCCTGTTTGAAAGTAAAAGTTTTTTTGCCAAATTCTA
GAAACTTGCTGTATACTTAAACTTCAAAAGCAATGATCGATGGTGGGAAA
GGGACTTCATCCTTGTACTTTAGATGAAATTTATTCCGGTTTACCAATCC
CTTTGTTTTCTTAGCCAATGGAGGATGTATTATCACAATATGCTGACCTC
ATACAACTGAATGAAAACGAGGTTTACAGGCTTGAAAACAAGTGTGAAGA
TTTAGTGGACTTCTCCAAACTGGATGAAAAATGCAGACGTCAGCAATACC
CTATCTTTGAATTTATCAAGACTGAAAAAAAATTCATTCAAAAAATACAC
GCTATCTGTAAAGTAAGTCAATTCAAGTTTCTTTTTCAGATAAGAAACCT
CTAAAAAACAGGAATACTGAACCTTCCCAAGAAAAAATCTGTAGAAGAAT
CATATACCTTTGCTTGAAAAACTCAGTTGTAATTTTCTAATTGTTCTAGT
GATTTTAAAGCTAGTTTTGAACCTGGACCATTACAATCAACTTTCATAAT
GATAAGAAATTGTAGCAACTTTGTGCTATTGTATGGGCTATATTATTTAT
TTCCCTCGCCCTCTATGTTGAGGGTTTCTGTTTTAAGGGAGTTTCCCTAG
TCAAATAATATGTAAAATCTAGAAGGTGAAGACTTTTTTATGTAAAATAT
CTGGTGTTATTAAATATTTCAGCGTTTCAAATGGGTTTCTAAGAAGTATC
CAGGTAGTAATTTAATAGGATTAATTTTCGCGGGGATTAAATTTCACGAA
TGAGCTCATCTGCGAAATTTTAAGATTTCACGGGGACTTAATTTTGCAGA
TTGCACTATTGGGTGACAATATTATCACAATCTTCTGTATCTTCTGCCTT
TTCCTGTCAAATCATGCATGATGGTTATTGAAATACGCCTCTGTGATGCC
AGTAAACATTTAGAAAGTATTCGGTGTTTTGTCTAGAAATATTTCGCGGA
TAAGGCCTTTCCAAATATCCATTGGGACTTAATTTCGTAGTTACTCAAAT
CCGCGAAATTTAAGCCCGGCGAAAATTTATCCCATTAAAGTATCTGAAAT
GTCGGCAAAAAATCAATGGTTTTGAACTCTTTACGGGGAGACTAACTTTT
TCGCTCATATTTTATCCCATAAATTTTCTTCTGGTACAGTTATTTTGTCA
GATCTTCAAATGTTTGAAAAATGATGGCTACCTAGCAAATTTTCAGTTTG
AAGATGTGTTTGCGAATATCGAGGACGTCTTTCGCGTCAACGACAGAATA
TGGGCGACGTCGATTTACACGATGCTCGAAAAAACACGACATACAAAAGC
TCCGATCAAACCCTCAGAAATCTTTCAAAGTTTTATCTATGTGAGTTTTT
TAAATTGCGAACTTCGACTTTCAATCGAACTGTAGTTCTACTTAATATTG
GGATATAAATGTTTTCTATAAAAATGGTTACCACTATAACCACTATCTGC
CTACTATAAAAGGTAGCAATCTCAGTGATGGAACTAGTCTTAAAAATAAT
GGGGTCATCAATTATAATAGTACAAAAATACATTCTTATTAGCCTTGTCT
GCGTTTAAAAGCTTTTAATTCAAAAGCTTTTTGGTTTCTCACTTCCTGGT
ACTTCTTGATCTGTTGCTTAAAGGACTGAAATCAAAATGTCAGTTTTTAT
TAGCACTAGCCTGTCTCTTACTCTTTAGATGGATGACCAATTTCAGCCGT
ATTTGAAATACAGCATGAAATTTGAAGGTTGTGTGGAAAAGATTCGGCAA
GTCACCAAAAATCCGAAGCAAGCAGATGAAGAATTCACGACGTATTTACA
GGTATGGTTTACTTTGGAATTGAAGGGATGGTCTTGCATTCCCTTTCTGA
AAATTGGCCAAAAGAGGGATGGTTTCGATAAAGATTTCACTTTGAAAATT
GAAAATCTAGACCATTATTACATTATTATCAATGAAATTATATATTGTAC
TTTTAAACTGATTAAATCTAGCTTGCTAGCTTGAATTTTTATTTAATCGA
ACATTGGGTTGATGATATGGGGGTTCATATTGGTGATAAGACACCCCCTT
CTCACAGACCAGATTCGACCCCCTCTCACTGGAAGCCAAAATCGCGGGGT
TTACCTATTTCAACTTGCAATTTCTAGTGCAAGACCCTATAAATTTAAAT
ATTTTGCTTGCAGCTTGCGAATCGAGTGAATTGCCTGGATCACTTCGAAA
TTCACGTTAGAGAGACCTGACCAAAATATCGTCTTCTGTGGAAAATTATA
TACTATAAGTTTTGAAGATAATCAAATAAGCAAATCTTCACTGCAAAATA
TTGTGCTATTTTACCCAATTGAACTTTCTGACTTGAAATAATTAGAACTC
AAAACCCCAGCCATAAAAAAACATGGGAATATTAATCCCCATCGAGTTTC
ATTCCGTTATTTTTACCCTAACTGGCTGAAAAAATCCACCGTGTCTGTGA
AATGGGGTTGTGACGAGGTATTTATTATTGGTAAAAGGGATCAAAGCAAA
ATCGATATTATATTTTAGTTTTGTGATAGAAAGGTTTCGAAATTATCAAT
ATGCGAGGGAATGAAAATACGAGATCTAATGAGCGATCCCTTGTCAAGAA
TGATGAAGTACCCAGACCTCCTGCAACGCGTTCGAAAATACACACAAGAA
GAAGATGAAATTCGTTTCCTTGACCTCATTGTGAGTACCAATAAATCACC
GAGTTTTATTGGAAAGCGATAAAATCCATGATTGAAGCTTTTTAAAGTGT
TGCCCTAATGGGCTCTTCCAGAAAAAAATTGAAAATGGGAGGGGTGTGGA
GGATATAACATTTTTTGGAAATATATCCCCTGGACATTTAAAATTACCCC
TAACCCCTAACAAGTTTGCCCCAAAAACAAGTCAAATTTTGCATTTTTTT
TCTGATAGAGCTCATGAGTATATAACGTCCAGCAGTAAATTCAAAAAGTT
GTGCTATTGGCTATGGGTCCAAAGCAATCTCGTATCCAGAGCCACTTGTA
GTTGTACCACCTTTCGTGAACGCTATCAGAATTATAAAAAAGAAGCGCTA
AGGGACTGAATACGAATTTGGGTCCAAAGTTGTCAAACCCGAAAAGAAAA
GCTTAAGCTATTGCTCTCACTTTTTAGATCAGCAAAATCAAAGGCTTTCT
ACGCAATATGAACACTGAAAAAAGGCGACGCCAAGAAAACGTGGAATTAC
AAAGTTTCGTTCTCCAAGAACTTGATGATCAGGATGTTTGGTTTGCTGGA
ACTGAAGAAATCTTCTGGGTAAGGAAAAAATGTCACCTCGTGAACATCAG
ATTACTAGTTTATAGGCTTCTGTGAATTTCGTAAACTGTCCGTTTTACAC
AAGCTTATTATGAAATATCAATTAAATATCTCAAACTCCGTGGAAAAGCT
AAATTCTTAGGTTTCTGCTCATCCTCTAGCGAAAAGAGTTTCTTATATAT
ATAGGAAGTATATCTTCTGTATACAGGTCTGTGATTCAGACTAGTCCAAT
TTTATGTCTCAGTGAGTGAAAGTCACTTTATGTATGTAAAAGAAAAAACT
AGAAATAACCATATCCTCTCTTCTTTTTCACAGAGTGCAAAAGAGTTCTT
GAGAGCACCAATGAAGGTTCGAACACGTAACCATAAAAACACAGTGAAAG
AAGAACAACAAAGATGTCTTCTCAAACGTGGACCAATGAGAATCAGTCTA
GAAAACAGACGAAAGGTGAAGGAATTCAGGCCTCAATAAATATGAAAAGT
TTTTGATGCAAAGCCAGTCTTTTATCAAATTCCTCGTTGTATCAAAAATT
TTTTTTGTTCAAATGTATTCTTTGGGCAATTTTTTATGGGTCACCCTAGT
CTGTACGCATCCCTCTAATATGTTTTGATAAAGGGGATGCTAATCGTGTA
TAAAATTACCCCAACATTCAAAGGTTTGGAAATCCAATGATAGTATTAAC
CTCTAGTCATTCATATTTTCAATTAAAGTTTTATGAAAATTATGAAAAGA
TCTTCCATATAAGACTTATGTATGGTCAAGCTAATCAAGTTCCTAAAAAC
TCAAAAACACGGGGGTAACTCTCAGGAGGGAACTTTATACACGACAATCA
TCCCCTTTATCAAAACATATGATGCGTGTAGCTTAGGATAACACTTAGAA
AAATTACATATTTTCAAAAGGAACACTCTCCATCATACAGAACATTTTTA
GTCTCACCCAAAATGCTGAGGGAATAAACATTTCAATAGATCTTATCGAA
TAGATCTTTTTCAAGAGGATAGGATCAGTACTACCCTGAAAAGACAACAA
GAGCATGGCAAATTCGTAATAAATGATCATCCTTCTTGATATAGCTTGAC
GTAGAAGCCATTTTGTTCAGTGACGTTTTGATAATTGCACGGAATCGAAG
AACCAACAAGAAATTGACACTTGTCAAACAACTCTATTTCTTGGATAAAG
TCTTGTTGAAATTGTCTGAAGTTTCCAGTAATGGCGTTCTACTGATTTAC
AAAAATGAAGTTGGATTACTGTCCGAAGTTGTCAAATTGGAAATCTGGGA
TTATAATGGAGAAGTTAATACACGAGATATTTGGTGTAATAAAGTGGAAA
TTGCCAAGGTTAGCTTTCATTAATAAAGGCCCCTCAGCGGTAAGTCTGAT
CATTATATCACGCAATTTTTTGTCTTCAATTACGATCACGCTAATTCAGC
AAAAATTTGGATTATCATGCATCCTGAGTCCAAATCACGCATCACGATTC
CAAAATCTTTCAAATCACGATCAAGTTTTGACCTCTGATCACGCAATCAC
GAAAAAAAAATTCCAAATTACGTAATCACGCTCGAAAAAAGTCCCTATCA
CGCCATCACGAAAGCCGCTTGGGGGCCTCATTATAGTGGAGTCTCCATAA
CTCGAACACGCAAAACTCGGAACGCAAATCTGTCCAAGTTAAGGAAATTT
CAAGTTGTGGAGTAAGGTTCATAAGACATTGAATTCATTGTTAACTTTGA
CAAAAAACACATGTTCGAGATAAGCAGACAATTCGAGTAGTAGAGGTTCG
AGTGCTGGAGACTAGACAGTTTGTAATAGCAAAAACAACGGGGAATAAAA
AGATGCTCGAAGCTTTCATAAAAGTGAGAGAGGAAGAATAACGTCTTCAA
AGCCAAGGAAGTCTTTTTTATTGAAACAAGATTGATACGTTTCACCGTGA
AACCAGCGATTTGTTCCCCATATTTTTTCTCATGTGATTTTTAAGGGCTA
CTTAGACTACACAATATATTGACGACCAATATTTGACAATATAGTTTTCA
GACTGTAATGTACGGAGTAAACAACAGGTACTCTATTATAAAAAGGAATT
TTCTTTCTTAAAAAATCCCCCTATATTGTTGGAATATTGGAAATCGAGCT
ACTGAGGCTAGATATTGACAGCTTTTGGTTGGCAAAGTTTTTGTTTGTTT
TTATCAAGCGAAGATTATCTGTTCTGGGACTTCTGTATGTGGCCCTTTTC
CAATACTGTAGTTCTGTAGTGACTGTCAAACTTTCTATTTCCTTACAGAG
AGTATACTTATCAACGCTCAACGGTACAGGAAGCACACTAGACATCTTCC
AACAATGTTACAACAAAGCGGACGAACACAAGCGCAAAGAAAAGGAGAAT
GAGGGGTTGGAAAATTTCAAACGAACTTCATCATGGCTTTTAGTGGGCGA
CCGAGTGGAAGCCTTACGAAAAAGTCGCAACAAACAGAGAAGCATTTCAA
CTGATAGTTTTAAGCGAGCTCTTTCTGATCCCAATTTGTTGGAGGGCTTA
GACCAACTACCGGAAGAAGAAGGGGAAAGTCCCAGAAATGGGGAAATTAC
CCCTGAACCACCACAAATAATAATTGTCCCAGAAGAGAAGAAATTTTTAT
CGCTACGTTTGAAAAAATCAGCGAGCAAAATGACTGTGATAAAGAAATTT
AGTTTGGATAATTCACCGAAGTCGACATTTTTCGTCCCAGAGGAAGAGGA
CTTTGAAGAAGTACCACGGAGGAGATCGAAAAGTTTCGACCCTCCATCGG
AGCGTGCGGAACAAAGCGCAGATACGACATCACAAGATTCACACGATACT
GCTTTGTAAAAGAAGACTAAACTAAACCATCATTGATTAGATTTCTTTTA
TTATTAGTATCTATTTTTATAGAATATTCCCAAAGTTCATCTTTTTTATA
AGAAATACTTT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_036646	XLOC_036646	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_307	supercontig	scaffold_307:157327..164087 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.169604	0	0.489261	0.534071	0.394211	1.75041	1.25201	0.00145311	1.4045	0.407163	0.432374	0.74533	1.05164	0.881611	1.38866	1.29564	0.808691	0.429656	1.41581	1.91315	0.808281	1.37715	0.469374	1.08974	1.9965	0.518017	0.231746	0

Blast

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BLAST of TCONS_00058160 vs. Swiss-Prot (Human)
Match: PKHG5 (Pleckstrin homology domain-containing family G member 5 OS=Homo sapiens GN=PLEKHG5 PE=1 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 4.205e-20
Identity = 70/271 (25.83%), Postives = 137/271 (50.55%), Query Frame = 2

Query:  476 FQPYLKYSMKFEGCVEKIRQVTKNPKQADEEFTTYLQFCDRKVSKLSICEGMKIRDLMSDPLSRMMKYPDLLQRVRKYTQEEDEIRFLDLIISKIKGFLRNMNTEKRRRQENVELQSFVLQELDDQDVWFAGTEEIFWSAKEFLR----APMKVRTRNHKNTVKEEQQRCLLKRGPMRISLENRRKLDVEAILFSDVLIIARNRRTNKKLTLVKQLYFLDKVLLKLSEVSSNG-VLLIYKNEVGLLSEVVKLEIWDYNGEVNTRDIWCNKV 1273
            F+PY++Y M+ EGC+E +R + ++    ++ F  Y+ + ++       C+ +K+ D+++ P  R+ KYP LL+ V + T+E      +  +I  ++ F+ ++N   R+RQE   L + V+  +D  +V  + ++E+    KEFL     AP+             E+ R LL  G +R+      K+DV   LF+D+L++ +  +  ++  +++    +DK++ +  E+   G  LLIY NE       V    +  +G+   R  W + +
Sbjct:  488 FKPYIRYCMEEEGCMEYMRGLLRD----NDLFRAYITWAEKHPQ----CQRLKLSDMLAKPHQRLTKYPLLLKSVLRKTEEPRAKEAVVAMIGSVERFIHHVNACMRQRQERQRLAA-VVSRIDAYEVVESSSDEVDKLLKEFLHLDLTAPIP--------GASPEETRQLLLEGSLRMKEGKDSKMDVYCFLFTDLLLVTKAVKKAERTRVIRPPLLVDKIVCR--ELRDPGSFLLIYLNE---FHSAVGAYTFQASGQALCRG-WVDTI 735

The following BLAST results are available for this feature:

BLAST of TCONS_00058160 vs. Swiss-Prot (Human)

BLAST of TCONS_00058160 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
PKHG5	4.205e-20	25.83	Pleckstrin homology domain-containing family G mem...	[more]

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TCONS_00058160 (transcript) - C. hemisphaerica