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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058138 ID=TCONS_00058138|Name=TCONS_00058138|organism=Clytia hemisphaerica|type=transcript|length=1478bp
TAGGTGCGGAACATCCGTCGAAAACAGAAAGTGATTAATGAGAAACAATT
TGGTATTCCTAAAGAGGATTTGACGACACTTCACAGTTTAGGTTCTGAAA
TGTTTGGTTTCACTCACTACATCACAACACACCCTGAATTCGTCTGCATC
ATTGGTCTCAGTGAAATGGTCGTCGAAATTGAAAGCTTAATGAAAATTAC
AGATAATATGGTTGTGTTCTGTTTCCATGAGAACTATAAAGTTGGGAATT
ACTATATCACACCTTTTGGTTTTATACACTCAGCTTTTGAAGAGAGGCCA
GCGTTACCATGTTATTTTCTGGTATCAGACACTTGTGATTTTCATATTTA
TAAGAAATTCTTAGACACCATACAAGAGCATATACCGAACTTAGAAATGT
TACGTACGGCTGTGATCACAAACCAAGAGCTTGCTTTCACCTCTATTTTA
ACGATACAATTTCCAGCATGGGTACATGTTTACGACTGGGAGATACTGTT
TGCGGCCGCGCGGGCGTTCCTAAGGAAGTTGGACATTGATAAACGGATAA
TCTTTTTGAGAATTAAACAATTGAAAGCATTGATGAGTTCAGAGACTTTT
GAAGATTACAGATTGGAATTAGAAAGGTTGAAGAAAGATTGGCCGTTACC
GTTCTGTGACTACTATATGCAGGTGTTAAGAGAACCTGTGGAAACGAAAC
TTGGCAGATGGCTACTTGAAAGGTAATAGATATTAAGATATTATACAGTT
GATGCTTCCTAATTTGACCTTCTACTTtgcgatacgctccattattcgat
aatattgaaagccgCTTTCAACATGAAATTCTCACAAACGACGCTCTACC
ATTTCATACGtacccttattcgatgaaatgacaatcccccccccccttga
atATCGAATAAGAGCATCAACTGTAATAATTTTTTGGAATTCTTTCCACg
attattaatcattttgtGCTCAGAATTTTGTCTGCAGTATTTCTAATACT
CGATTTTAGACGATGTTTAGTCGTTATGGTTCCATGTTGTATCGAAACTG
TTCCCGTCAAGGATAGTCACTACTGACATCGgtttggaaaagttttgaag
cTGTTCCGTTCCAATGAAAAGGGATTGTTTTGCTATGATTTGCTAGTTTT
TTTAGTATCTCTGAACATTTTCTTACGAGTACTATCTATTATTGTTCCAT
TCTTTTGAAAGTTAATAAATTTCTTTAGATTCAAACTTTTCCATCCGGTC
ACTGGCTTATTACGAGGACTAAACCACGATCTACAACTGGTCATCAAGCA
TCTGCAAGACCTCAAAGACACTTCACTAGACGTTATACTACCTTCACTGT
ACCACATTCAAATCCATCTTTATGCTAACATTCAGAAAAGTTTCTGTGGT
ACAGGTCCATACAAATTATGCAACTCCTTCAAATTCTTACAAAGAGAGAT
GGATGAACTTGTACTGCCAGCGAAGGTA Run BLAST on NCBI transcript from alignment at scaffold_307:289065..290542+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058138 ID=TCONS_00058138|Name=TCONS_00058138|organism=Clytia hemisphaerica|type=transcript|length=1478bp|location=Sequence derived from alignment at scaffold_307:289065..290542+ (Clytia hemisphaerica)
TAGGTGCGGAACATCCGTCGAAAACAGAAAGTGATTAATGAGAAACAATT
TGGTATTCCTAAAGAGGATTTGACGACACTTCACAGTTTAGGTTCTGAAA
TGTTTGGTTTCACTCACTACATCACAACACACCCTGAATTCGTCTGCATC
ATTGGTCTCAGTGAAATGGTCGTCGAAATTGAAAGCTTAATGAAAATTAC
AGATAATATGGTTGTGTTCTGTTTCCATGAGAACTATAAAGTTGGGAATT
ACTATATCACACCTTTTGGTTTTATACACTCAGCTTTTGAAGAGAGGCCA
GCGTTACCATGTTATTTTCTGGTATCAGACACTTGTGATTTTCATATTTA
TAAGAAATTCTTAGACACCATACAAGAGCATATACCGAACTTAGAAATGT
TACGTACGGCTGTGATCACAAACCAAGAGCTTGCTTTCACCTCTATTTTA
ACGATACAATTTCCAGCATGGGTACATGTTTACGACTGGGAGATACTGTT
TGCGGCCGCGCGGGCGTTCCTAAGGAAGTTGGACATTGATAAACGGATAA
TCTTTTTGAGAATTAAACAATTGAAAGCATTGATGAGTTCAGAGACTTTT
GAAGATTACAGATTGGAATTAGAAAGGTTGAAGAAAGATTGGCCGTTACC
GTTCTGTGACTACTATATGCAGGTGTTAAGAGAACCTGTGGAAACGAAAC
TTGGCAGATGGCTACTTGAAAGGTAATAGATATTAAGATATTATACAGTT
GATGCTTCCTAATTTGACCTTCTACTTtgcgatacgctccattattcgat
aatattgaaagccgCTTTCAACATGAAATTCTCACAAACGACGCTCTACC
ATTTCATACGtacccttattcgatgaaatgacaatcccccccccccttga
atATCGAATAAGAGCATCAACTGTAATAATTTTTTGGAATTCTTTCCACg
attattaatcattttgtGCTCAGAATTTTGTCTGCAGTATTTCTAATACT
CGATTTTAGACGATGTTTAGTCGTTATGGTTCCATGTTGTATCGAAACTG
TTCCCGTCAAGGATAGTCACTACTGACATCGgtttggaaaagttttgaag
cTGTTCCGTTCCAATGAAAAGGGATTGTTTTGCTATGATTTGCTAGTTTT
TTTAGTATCTCTGAACATTTTCTTACGAGTACTATCTATTATTGTTCCAT
TCTTTTGAAAGTTAATAAATTTCTTTAGATTCAAACTTTTCCATCCGGTC
ACTGGCTTATTACGAGGACTAAACCACGATCTACAACTGGTCATCAAGCA
TCTGCAAGACCTCAAAGACACTTCACTAGACGTTATACTACCTTCACTGT
ACCACATTCAAATCCATCTTTATGCTAACATTCAGAAAAGTTTCTGTGGT
ACAGGTCCATACAAATTATGCAACTCCTTCAAATTCTTACAAAGAGAGAT
GGATGAACTTGTACTGCCAGCGAAGGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058138-exon-scaffold_307-1491911889:289065..290542 | TCONS_00058138-exon-scaffold_307-1491911889:289065..290542 | Clytia hemisphaerica | exon |
| TCONS_00058138-exon-scaffold_307-1510915933:289065..290542 | TCONS_00058138-exon-scaffold_307-1510915933:289065..290542 | Clytia hemisphaerica | exon |
| TCONS_00058138-exon-scaffold_307-1575043694:289065..290542 | TCONS_00058138-exon-scaffold_307-1575043694:289065..290542 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_307 | supercontig | scaffold_307:289065..290542 + |
Blast
The following BLAST results are available for this feature:
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