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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058115 ID=TCONS_00058115|Name=TCONS_00058115|organism=Clytia hemisphaerica|type=transcript|length=1925bp
CAAGAAACAtgtaatttaaagaaaaaatcaaagattaatgGATGATCAAT
GGACCATGTGTTTGTCTTATTTAAACAAAGAAAGTTCCAGGAAAATTTGT
GACAAATTTTCTTCCCCTATGGCACCAAGATCCCAGTAAAAGCACCAGCT
TAATACAAGTACCACCAAATAATTGTTAGTTGTTTTAAATATTAAACAAA
ATGGTATATGCTGAGAAAATCTTCAAGCTCTCTTCATAAATTATGTACAC
CATTAGAATTTAAAATGACTATTCTACTGAACAAAATTAATAATACTGAT
GCTAAATTGTTATTCAAGACAAATCTTTGACATTTTATGGTTATGAAAAA
ACCTCATATACATATTCTTTAACAAGAAGGTAAGTTTCAATTCCATGATT
ACCGTCATCAGCAATCAAATCCATTTCATtactaattttttctttgaaat
atttgGATTGCTCTCCCATATAGATATCATTAACTTCCACGAGACTAACA
GGttcatcttcttcatcaacGCAAGATATTGGGTCAACCCCATAAAGtgg
atcattttcatcattgagTTTGGAAACGTAAGTGCGAACACCTCTTTGAT
CGGCTTTTTTGTTATCCATCATGCCTTCAAGCCACTGCTGATATGGTGAT
CTATTTTTCTCAGTTGACATTGGGTGGTGATTCCAGGCCTCACGAAATTC
ATCTAAGGACCTCTGAATTCTTGGAATGAATACCAAGTGCAAACTGAACA
GGTCAAACTGATTATTTCGAtcaagataatcatttttctccATAAAAAGG
AAAAGATGAATAAAATGGCTCAAAACAGCATGATTTATGTCGTAGTTTAA
ACGCTCTATGCGCTGGTTGTGCACAGAGGGTCCTTGAATATAGGCGCCAT
CATAGCCTTGATGCGATCTCATGTATCGCATTATTCCAACATTTTCACCA
CCACTATCCCCTCGGACTCTAGCAGGCAGGCCATACTTCTCAACCCCACT
TAAAAAACCAGCCAAGGCAGTTTCTGGGAGATTGTTTGAAGCACACAAAA
GCGATGTTGCCAGTCTTGAGAAGCCATCTATACAGCCATGGACTACGAGT
CCCCAGTGTATGAGTTTGTGTACACCATCGTTGTGCCAAAGTGAATTTGG
TCCAGGAACACTATAGACCCATCTTGGATTTTGTTTAAACCAGCGCAAGG
CTGTGTTGGTTGGATCAATGCGATGAATGCTCTCTCTGACACGCCATCTT
TGAACAAGTATGGATTTGGACCTTAAAAATCCAATCACAGAAACTTCGCC
ACATAAGGgatgttgtttttttacttcAAGAATGAAGCTGTCTAATTCAT
CATCAGTAACTTTGGTCCATTTATCCATTGACTCATAGCCATTCTCTTTC
AGCCGGCGCCAAAGTGTTGTTCTGTCAACCGAAAGTATTTTAGCTATTCT
ATTTAACTTGAAAGAATATTGTCTCAGAGTAAAAACATAATCCAAATCGA
TCACATATTTTGGTCTACCCTTTGTAGAAGTGTATTCTTTTTGCGCTGCA
TAGCGACAGAAATCTGCAGTAACAGGAGCTTTAGCTTgcccatttttctt
ttcaatccaATAAATTGTTAATTTCTTAAGATTACTGAGCAACTCTTCCA
GTTCAACTTCAGTCAATGGACAGTTAGTTTTATGACCCGCCTTTACTGCA
ACAACCATTAAGCTCAAAgcattttccattgttttaatttttttaaccaa
aGATTGACATACTTTAAAATTTGCATCTTTCTCTCTCCTCTCACATTCAT
tggttatttttgaaatttggtgcAAAAACTCATCAAAGGTATCCTTGCTG
ACCATCATTTGAAATTTATTGCTAGTTTGCTTATTTTCtaatttattaaa
ataattcaaatttaaaacaaagACC Run BLAST on NCBI transcript from alignment at scaffold_306:97091..99083+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058115 ID=TCONS_00058115|Name=TCONS_00058115|organism=Clytia hemisphaerica|type=transcript|length=1993bp|location=Sequence derived from alignment at scaffold_306:97091..99083+ (Clytia hemisphaerica)
CAAGAAACAtgtaatttaaagaaaaaatcaaagattaatgGATGATCAAT
GGACCATGTGTTTGTCTTATTTAAACAAAGAAAGTTCCAGGAAAATTTGT
GACAAATTTTCTTCCCCTATGGCACCAAGATCCCAGTAAAAGCACCAGCT
TAATACAAGTACCACCAAATAATTGTTAGTTGTTTTAAATATTAAACAAA
ATGGTATATGCTGAGAAAATCTTCAAGCTCTCTTCATAAATTATGTACAC
CATTAGAATTTAAAATGACTATTCTACTGAACAAAATTAATAATACATAT
GCTAAATTGTTATTCAAGACAAATCTATGACATTTTATGGTTATGAAAAA
ACCTCATNCAATACTGATGCTAAATTGTTATTCAAGACAAATCTTTGACA
TTTTATGGTTATGAAAAAACCTCATATACATATTCTTTAACAAGAAGGTA
AGTTTCAATTCCATGATTACCGTCATCAGCAATCAAATCCATTTCATtac
taattttttctttgaaatatttgGATTGCTCTCCCATATAGATATCATTA
ACTTCCACGAGACTAACAGGttcatcttcttcatcaacGCAAGATATTGG
GTCAACCCCATAAAGtggatcattttcatcattgagTTTGGAAACGTAAG
TGCGAACACCTCTTTGATCGGCTTTTTTGTTATCCATCATGCCTTCAAGC
CACTGCTGATATGGTGATCTATTTTTCTCAGTTGACATTGGGTGGTGATT
CCAGGCCTCACGAAATTCATCTAAGGACCTCTGAATTCTTGGAATGAATA
CCAAGTGCAAACTGAACAGGTCAAACTGATTATTTCGAtcaagataatca
tttttctccATAAAAAGGAAAAGATGAATAAAATGGCTCAAAACAGCATG
ATTTATGTCGTAGTTTAAACGCTCTATGCGCTGGTTGTGCACAGAGGGTC
CTTGAATATAGGCGCCATCATAGCCTTGATGCGATCTCATGTATCGCATT
ATTCCAACATTTTCACCACCACTATCCCCTCGGACTCTAGCAGGCAGGCC
ATACTTCTCAACCCCACTTAAAAAACCAGCCAAGGCAGTTTCTGGGAGAT
TGTTTGAAGCACACAAAAGCGATGTTGCCAGTCTTGAGAAGCCATCTATA
CAGCCATGGACTACGAGTCCCCAGTGTATGAGTTTGTGTACACCATCGTT
GTGCCAAAGTGAATTTGGTCCAGGAACACTATAGACCCATCTTGGATTTT
GTTTAAACCAGCGCAAGGCTGTGTTGGTTGGATCAATGCGATGAATGCTC
TCTCTGACACGCCATCTTTGAACAAGTATGGATTTGGACCTTAAAAATCC
AATCACAGAAACTTCGCCACATAAGGgatgttgtttttttacttcAAGAA
TGAAGCTGTCTAATTCATCATCAGTAACTTTGGTCCATTTATCCATTGAC
TCATAGCCATTCTCTTTCAGCCGGCGCCAAAGTGTTGTTCTGTCAACCGA
AAGTATTTTAGCTATTCTATTTAACTTGAAAGAATATTGTCTCAGAGTAA
AAACATAATCCAAATCGATCACATATTTTGGTCTACCCTTTGTAGAAGTG
TATTCTTTTTGCGCTGCATAGCGACAGAAATCTGCAGTAACAGGAGCTTT
AGCTTgcccatttttcttttcaatccaATAAATTGTTAATTTCTTAAGAT
TACTGAGCAACTCTTCCAGTTCAACTTCAGTCAATGGACAGTTAGTTTTA
TGACCCGCCTTTACTGCAACAACCATTAAGCTCAAAgcattttccattgt
tttaatttttttaaccaaaGATTGACATACTTTAAAATTTGCATCTTTCT
CTCTCCTCTCACATTCATtggttatttttgaaatttggtgcAAAAACTCA
TCAAAGGTATCCTTGCTGACCATCATTTGAAATTTATTGCTAGTTTGCTT
ATTTTCtaatttattaaaataattcaaatttaaaacaaagACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058115-exon-scaffold_306-1491911889:97091..97386 | TCONS_00058115-exon-scaffold_306-1491911889:97091..97386 | Clytia hemisphaerica | exon |
| TCONS_00058115-exon-scaffold_306-1510915933:97091..97386 | TCONS_00058115-exon-scaffold_306-1510915933:97091..97386 | Clytia hemisphaerica | exon |
| TCONS_00058115-exon-scaffold_306-1575043694:97091..97386 | TCONS_00058115-exon-scaffold_306-1575043694:97091..97386 | Clytia hemisphaerica | exon |
| TCONS_00058115-exon-scaffold_306-1491911889:97455..99083 | TCONS_00058115-exon-scaffold_306-1491911889:97455..99083 | Clytia hemisphaerica | exon |
| TCONS_00058115-exon-scaffold_306-1510915933:97455..99083 | TCONS_00058115-exon-scaffold_306-1510915933:97455..99083 | Clytia hemisphaerica | exon |
| TCONS_00058115-exon-scaffold_306-1575043694:97455..99083 | TCONS_00058115-exon-scaffold_306-1575043694:97455..99083 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_306 | supercontig | scaffold_306:97091..99083 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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