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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058114 ID=TCONS_00058114|Name=TCONS_00058114|organism=Clytia hemisphaerica|type=transcript|length=1970bp
tttttggacctaccgggaggtcctttaatttgaccgttgtccgttcgtct
gttacaagcttttctcgggattggctcattagtttttttttattttttgc
acaatgatacaaaatggcaatgcctgaaaagtgacggagcccgatttgtg
aaaaaaattcctggggggcaaatttggaaAAGAAGCTGTTAAAAGCCTCA
CTGACCACCCAAAACGCTATTTGGAAGGACATGAAAATTCGAAGAAACAT
CAAGATTCCGTCAAAGAATACGAAGGTGTGTACATCAAACATATATCAGG
ACTCTTCATAACTCGGATATTGACAGACATTTTCCAACTATATGACCTTT
ATCACCTAAATATCCACATGTTCTTCTTATTTTTGACGTTATATTACCAT
TCTCGACTCacttttattatcttttttatttttgctttcaTAGAGTACAT
GAACGTCTATAAAAACAGTAACGAAAGATCTTACATTACACCGGTTACAA
GTAACTTGACAATGACAATAACTATGACAATGACACATTTGCACCCTTAT
GCACTATAAAGCCTCGACAAAGTACTCTGAAACAATGCCAACAATTTACA
ACTTTTATTGCTCTAAGGTAGAATGCTGATGTCAATTGTCAGGCTTTCTA
ATATTTCATCATTCACAATTATTTTCTCGATTTATTGGCTCATAAACTTT
AGTTGGCGTATCTTTAGATACaccctttttataagaatatcgtaTTTTGG
TTGAGGTAAAAAATGTAGGCAATTTTCACTCTGATATTCTTAGATTTGAT
TCTTGTAGGAAAGGCGTGTAATTATAAAATACATTTCGTTCAATCTATTT
TACAGAATTCAAGATGCAACACACTTTATCAAGTATTGAAGAGGAAAAAC
TACGGAGAGAGATTGGAGAATCCGAGATAACAGAAGAAGCTCTTCTCAAG
CTTCTGAAAATAACAGTGTTTATGATTAAAAAACACTGGGCCCATACATA
CAACTACAAGGACTTTGTTGAGTTTGTTAGTTTTGATCTAGGCGACGCTG
TCTTGAAGAAGTACATGGAACTTGCGGAGTCACATAAAAATGCAACTTAT
CTCTGGACTTCCACTGTCGTTCAACTTGTTAAAGTCATCAGTGAATGGat
gaaagaagagactctagaAGAATTAAGGAACTGCGAAGATTTCACACTTT
TACTTGACAAGTCAACTGATGATAGTAACAGATCTGAGCTTTGTCTTCAA
GTGAGAATTGTAAAAGGAGGAgaaattcaaaatcattttcttgaCCTACT
TCAACTTAAACGAGGAGACGCTCGCAGCATCTTTGATTCCATTGTTGAAT
ATTGTCAGAAAAATGAGATCAACTTAGATCACGCAAGATTTGGTGGAATG
GATGGTTGCACTGTCATGTCTGGTGAGCATAACGGACTCAAAGCTCTTCT
TGGGAACATTACTCCACACTTTATTTATATACATTGTCGTAACCACCGTC
TTGCATTGTGTTTTGCACATTTAATTCCAGAGTTCAAAGAGTTCGAAAAT
TTTGATGGGTTACTTTTGAATCTCTATCTATTACTTAAAAAAAGTACCGT
TAAACAGTCAATTTTCGACGAGGTTCAAAAGGCATACAACTTAACATCCC
TCAAATTGATCAAAGCAGCCGTAACTCGCTGGTTAAGTCATGGTCAAGCT
GGTCAAAGAGTATTAGACCTTTACGAGGCTTTGATTGCTGCACTTgatga
aatattcttacggaaACACGAACCAGCAGTGAGGGGTTTACGTGACGATC
TTATCAAGCCAACCACAATAGCTACTCTTTGCATTTTAACTGATGTAATT
ATGATGACAAACACAATGCAAAAATTTCTACAGTCTTCACGGCTCAATTT
CTTGGATATACccagagagaaagaaaaattaattgaaaagtTGAACGCTA
AATATAACAGCCCATCTGCC Run BLAST on NCBI transcript from alignment at scaffold_306:31863..33992+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058114 ID=TCONS_00058114|Name=TCONS_00058114|organism=Clytia hemisphaerica|type=transcript|length=2130bp|location=Sequence derived from alignment at scaffold_306:31863..33992+ (Clytia hemisphaerica)
tttttggacctaccgggaggtcctttaatttgaccgttgtccgttcgtct
gttacaagcttttctcgggattggctcattagtttttttttattttttgc
acaatgatacaaaatggcaatgcctgaaaagtgacggagcccgatttgtg
aaaaaaattcctggggggcaaatttggaaAAGAAGCTGTTAAAAGCCTCA
CTGACCACCCAAAACGCTATTTGGAAGGACATGAAAATTCGAAGAAACAT
CAAGATTCCGTCAAAGAATACGAAGGTGTGTACATCAAACATATATCAGG
ACTCTTCATAACTCGGATATTGACAGACATTTTCCAACTATATGACCTTT
ATCACCTAAATATCCACATGTTCTTCTTATTTTTGACGTTATATTACCAT
TCTCGACTCacttttattatcttttttatttttgctttcaTAGAGTACAT
GAACGTCTATAAAAACAGTAACGAAAGATCTTACATTACACCGGTTACAA
GTAACTTGACAATGACAATAACTATGACAATGACACATTTGCACCCTTAT
GCACTATAAAGCCTCGACAAAGTACTCTGAAACAATGCCAACAATTTACA
ACTTTTATTGCTCTAAGGTAGAATGCTGATGTCAATTGTCAGGCTTTCTA
ATATTTCATCATTCACAATTATTTTCTCGATTTATTGGCTCATAAACTTT
AGTTGGCGTATCTTTAGATACaccctttttataagaatatcgtaTTTTGG
TTGAGGTAAAAAATGTAGGCAATTTTCACTCTGATATTCTTAGATTTGAT
TCTTGTAGGAAAGGCGTgtaattttaaaatacatttCGTTCAATCTATTN
tcccagttggcacacaacgttattttaacgttcacataacgttatatggg
cgttctgaacgttagatggacgttgaaacaacgttgtgtccCAGCTGGGA
TAGATTTGATTCTTGTAGGAAAGGCGTGTAATTATAAAATACATTTCGTT
CAATCTATTTTACAGAATTCAAGATGCAACACACTTTATCAAGTATTGAA
GAGGAAAAACTACGGAGAGAGATTGGAGAATCCGAGATAACAGAAGAAGC
TCTTCTCAAGCTTCTGAAAATAACAGTGTTTATGATTAAAAAACACTGGG
CCCATACATACAACTACAAGGACTTTGTTGAGTTTGTTAGTTTTGATCTA
GGCGACGCTGTCTTGAAGAAGTACATGGAACTTGCGGAGTCACATAAAAA
TGCAACTTATCTCTGGACTTCCACTGTCGTTCAACTTGTTAAAGTCATCA
GTGAATGGatgaaagaagagactctagaAGAATTAAGGAACTGCGAAGAT
TTCACACTTTTACTTGACAAGTCAACTGATGATAGTAACAGATCTGAGCT
TTGTCTTCAAGTGAGAATTGTAAAAGGAGGAgaaattcaaaatcattttc
ttgaCCTACTTCAACTTAAACGAGGAGACGCTCGCAGCATCTTTGATTCC
ATTGTTGAATATTGTCAGAAAAATGAGATCAACTTAGATCACGCAAGATT
TGGTGGAATGGATGGTTGCACTGTCATGTCTGGTGAGCATAACGGACTCA
AAGCTCTTCTTGGGAACATTACTCCACACTTTATTTATATACATTGTCGT
AACCACCGTCTTGCATTGTGTTTTGCACATTTAATTCCAGAGTTCAAAGA
GTTCGAAAATTTTGATGGGTTACTTTTGAATCTCTATCTATTACTTAAAA
AAAGTACCGTTAAACAGTCAATTTTCGACGAGGTTCAAAAGGCATACAAC
TTAACATCCCTCAAATTGATCAAAGCAGCCGTAACTCGCTGGTTAAGTCA
TGGTCAAGCTGGTCAAAGAGTATTAGACCTTTACGAGGCTTTGATTGCTG
CACTTgatgaaatattcttacggaaACACGAACCAGCAGTGAGGGGTTTA
CGTGACGATCTTATCAAGCCAACCACAATAGCTACTCTTTGCATTTTAAC
TGATGTAATTATGATGACAAACACAATGCAAAAATTTCTACAGTCTTCAC
GGCTCAATTTCTTGGATATACccagagagaaagaaaaattaattgaaaag
tTGAACGCTAAATATAACAGCCCATCTGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058114-exon-scaffold_306-1491911889:31863..32675 | TCONS_00058114-exon-scaffold_306-1491911889:31863..32675 | Clytia hemisphaerica | exon |
| TCONS_00058114-exon-scaffold_306-1510915933:31863..32675 | TCONS_00058114-exon-scaffold_306-1510915933:31863..32675 | Clytia hemisphaerica | exon |
| TCONS_00058114-exon-scaffold_306-1575043694:31863..32675 | TCONS_00058114-exon-scaffold_306-1575043694:31863..32675 | Clytia hemisphaerica | exon |
| TCONS_00058114-exon-scaffold_306-1491911889:32836..33992 | TCONS_00058114-exon-scaffold_306-1491911889:32836..33992 | Clytia hemisphaerica | exon |
| TCONS_00058114-exon-scaffold_306-1510915933:32836..33992 | TCONS_00058114-exon-scaffold_306-1510915933:32836..33992 | Clytia hemisphaerica | exon |
| TCONS_00058114-exon-scaffold_306-1575043694:32836..33992 | TCONS_00058114-exon-scaffold_306-1575043694:32836..33992 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_306 | supercontig | scaffold_306:31863..33992 + |
Blast
The following BLAST results are available for this feature:
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