TCONS_00058105 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058105
Unique NameTCONS_00058105
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length368

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058105 ID=TCONS_00058105|Name=TCONS_00058105|organism=Clytia hemisphaerica|type=transcript|length=368bp
ATACTTTGCTGTTAAACTGTACTGGCAACGGTTGTCAGCTCCTTGGAATC
ACTTTGATCCCATTcctttcaaaatctatcctttCATTGGTCAGCTGCCT
GGCTTAAGCCAATTGAACGAGGAGGACTTTTTTAGGGAGCATTTCAAATG
GCTTGGAGATAAAGATACTAAAATCATGTGGCTCGGTGTTGATAAGTATC
TGATCACCAGAGACCAGAAAGTCATTGAAAAACTCTTGGTTAGTAACACC
AACATCACCAAATCCGTTTCTTATTGGATCCTCAACGACTGGCTTGGATC
TTCACTGCTTCTTACTACCGGCATTCATTGGCGAAACAAACGTAAAATGT
TGACCCCATCATTTCATT
Run BLAST on NCBI

protein sequence of TCONS_00058105-protein

>TCONS_00058105-protein ID=TCONS_00058105-protein|Name=TCONS_00058105-protein|organism=Clytia hemisphaerica|type=polypeptide|length=122bp
YFAVKLYWQRLSAPWNHFDPIPFKIYPFIGQLPGLSQLNEEDFFREHFKW
LGDKDTKIMWLGVDKYLITRDQKVIEKLLVSNTNITKSVSYWILNDWLGS
SLLLTTGIHWRNKRKMLTPSFH
Run BLAST on NCBI

transcript from alignment at scaffold_305:134031..134398

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058105 ID=TCONS_00058105|Name=TCONS_00058105|organism=Clytia hemisphaerica|type=transcript|length=368bp|location=Sequence derived from alignment at scaffold_305:134031..134398 (Clytia hemisphaerica)
AATGAAATGATGGGGTCAACATTTTACGTTTGTTTCGCCAATGAATGCCG
GTAGTAAGAAGCAGTGAAGATCCAAGCCAGTCGTTGAGGATCCAATAAGA
AACGGATTTGGTGATGTTGGTGTTACTAACCAAGAGTTTTTCAATGACTT
TCTGGTCTCTGGTGATCAGATACTTATCAACACCGAGCCACATGATTTTA
GTATCTTTATCTCCAAGCCATTTGAAATGCTCCCTAAAAAAGTCCTCCTC
GTTCAATTGGCTTAAGCCAGGCAGCTGACCAATGaaaggatagattttga
aaggAATGGGATCAAAGTGATTCCAAGGAGCTGACAACCGTTGCCAGTAC
AGTTTAACAGCAAAGTAT

Coding sequence (CDS) from alignment at scaffold_305:134031..134398

>TCONS_00058105 ID=TCONS_00058105|Name=TCONS_00058105|organism=Clytia hemisphaerica|type=CDS|length=366bp|location=Sequence derived from alignment at scaffold_305:134031..134398 (Clytia hemisphaerica)
ATGAAATGATGGGGTCAACATTTTACGTTTGTTTCGCCAATGAATGCCGG
TAGTAAGAAGCAGTGAAGATCCAAGCCAGTCGTTGAGGATCCAATAAGAA
ACGGATTTGGTGATGTTGGTGTTACTAACCAAGAGTTTTTCAATGACTTT
CTGGTCTCTGGTGATCAGATACTTATCAACACCGAGCCACATGATTTTAG
TATCTTTATCTCCAAGCCATTTGAAATGCTCCCTAAAAAAGTCCTCCTCG
TTCAATTGGCTTAAGCCAGGCAGCTGACCAATGaaaggatagattttgaa
aggAATGGGATCAAAGTGATTCCAAGGAGCTGACAACCGTTGCCAGTACA
GTTTAACAGCAAAGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036618XLOC_036618Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058105-proteinTCONS_00058105-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058105-exon-scaffold_305-1491911889:134031..134398TCONS_00058105-exon-scaffold_305-1491911889:134031..134398Clytia hemisphaericaexon
TCONS_00058105-exon-scaffold_305-1510915933:134031..134398TCONS_00058105-exon-scaffold_305-1510915933:134031..134398Clytia hemisphaericaexon
TCONS_00058105-exon-scaffold_305-1575043694:134031..134398TCONS_00058105-exon-scaffold_305-1575043694:134031..134398Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_305supercontigscaffold_305:134031..134398 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0129839	0.392424	0	0.134238	0	0	0	0	0	0	0.25237	0.296468	1.79121	0.954294	3.5006	1.93569	0.16281	0	3.07345	0.78864	0	0	0	0.232593	0.130109	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001128Cyt_P450
Vocabulary: Molecular Function
TermDefinition
GO:0005506iron ion binding
GO:0020037heme binding
GO:0016705oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0020037 heme binding
molecular_function GO:0005506 iron ion binding
molecular_function GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058105 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top