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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058104 ID=TCONS_00058104|Name=TCONS_00058104|organism=Clytia hemisphaerica|type=transcript|length=1760bp
AGGAAACTGATTTAAATATATAACCATGATCATCGAGTTGGTTGGCTTTC
TTCTGTTGGTATACTTTGCTGTTAAACTGTACTGGCAACGGTTGTCAGCT
CCTTGGAATCACTTCGATCCCATTcctttcaaaatctatcctttCATTGG
TCAGCTGCCTGGCTTAAGCCAATTGAACGAGGAGGACTTTTTTAGGGAGC
ATTTCAAATGGCTTGGAGATAAAGATACTAAAATCATGTGGCTCGGTGTT
GATAAGTATCTGATCACCAGAGACCAGAAAGTCATTGAAAAACTCTTGGT
TAGTAACACCAACATCACCAAATCCGTTTCTTATTGGATCCTCAACGACT
GGCTTGGATCTTCACTGCTTCTTACTACCGGCATTCATTGGCGAAACAAA
CGTAAAATGTTGACCCCATCATTTCATTTTAATATCCTTGATAACTTCTT
CCCGACTATTGAAAATCTAACCACGAAATTATGTGAAAGTCTTGAAAAAC
TTGCTGTGAAGGGAGACTCATTTGATGCTTGCAAAGCAATGAAATGGCAC
TCTATCGGAGTTATGTGTCAGACCATGATGGGCGTTGAAATGGGTGATTT
CTTAGAGACAGCTTTCAAGGGCGTCAAATGTGCTGACGAAGAGAAAACAG
AAATTGTTCACTTTGTAGAGTCCATTGATTTCATTTTGGAATTTGTTATT
ACCCGTTCAAAATGCTTATGGTACTGGAACAAACACATTCTTAAATTGTT
TCCTATTGGTAAACAATATTACCAGAGGTTGGATTTCATCAAGAAGTTCG
GTACTACCATGATCGAAAAGCGTATCGAGAAATTGAAAAACGATTCAGAA
GAAGACATACCATCAAATATAGACAGCAGGAATAAGAAAGTTATCTTCTT
GGATAAAATGCTGACCAACATCAATAAAGGTGAAGTCACTGTCGAGGATC
TTTTCTATGATACCCAGACCTTCATCTTCGCAGGTTATGATACAGTTGGA
ATTGGTTTAAGCTGGTGTTTATTTATGCTTGGCTCACACCCTAAACACCA
GGCTTTGGCTTATGAGGAGGCTCAAAGGATCAGGAACCTTGGTATCCCAA
TCGATCAGGCAGTAAAAGAAATGAAGTATATTGAATGTGTGATCAAGGAG
TCATTGAGGATCCATCCACCTGTTCCATTACCAAGCCGCAATTTAAATGA
AGGTTTCAACGTAGATGGAATCCATTATCCTAAAGGCACCACAATCGCTT
TTGATATCTTAGCATTGCACCGTGATTCAAAGATCTGGGAGGATGCTGGG
ACTTTCAAACCAGAGAGATTCTCGAGCAACGAACCCTCAGCTTCCAGCAC
GTTTAGTTTTATTCCGTTCTCGGCAGGACCTCGAAATTGCATTGGAATGC
GTTTTGCAATGATGGAACTTAAAGTGACCATCTACCATTTATTATCCAGA
TTTGAGATTCTGGCAATGCAAAAAACGGAAGAGCTAAGAGAAACCATTGG
TATCTTGCATGGTGTTGCTAATCCGGAAGGAATTCAAATTAAACTAAAAG
TTAGATAATAAACTTAGTGATGTGATTGGACAATAAACTTTTTATATAAA
CAACAGAAATCAATTTCAAGCCAAGAGTCTAATTCTCCATTTCTTTATTT
GcattatcaaaatcataaaaatcataaaaatagcGGAGAGGACTAGGGAC
AAGTGTGAGCAGATATCACTGGTGGAAATGACAAagtaaatgtttcaaaa
aagttactaa Run BLAST on NCBI protein sequence of TCONS_00058104-protein >TCONS_00058104-protein ID=TCONS_00058104-protein|Name=TCONS_00058104-protein|organism=Clytia hemisphaerica|type=polypeptide|length=510bp
MIIELVGFLLLVYFAVKLYWQRLSAPWNHFDPIPFKIYPFIGQLPGLSQL
NEEDFFREHFKWLGDKDTKIMWLGVDKYLITRDQKVIEKLLVSNTNITKS
VSYWILNDWLGSSLLLTTGIHWRNKRKMLTPSFHFNILDNFFPTIENLTT
KLCESLEKLAVKGDSFDACKAMKWHSIGVMCQTMMGVEMGDFLETAFKGV
KCADEEKTEIVHFVESIDFILEFVITRSKCLWYWNKHILKLFPIGKQYYQ
RLDFIKKFGTTMIEKRIEKLKNDSEEDIPSNIDSRNKKVIFLDKMLTNIN
KGEVTVEDLFYDTQTFIFAGYDTVGIGLSWCLFMLGSHPKHQALAYEEAQ
RIRNLGIPIDQAVKEMKYIECVIKESLRIHPPVPLPSRNLNEGFNVDGIH
YPKGTTIAFDILALHRDSKIWEDAGTFKPERFSSNEPSASSTFSFIPFSA
GPRNCIGMRFAMMELKVTIYHLLSRFEILAMQKTEELRETIGILHGVANP
EGIQIKLKVR Run BLAST on NCBI transcript from alignment at scaffold_305:131436..133195 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058104 ID=TCONS_00058104|Name=TCONS_00058104|organism=Clytia hemisphaerica|type=transcript|length=1760bp|location=Sequence derived from alignment at scaffold_305:131436..133195 (Clytia hemisphaerica)
ttagtaacttttttgaaacatttactTTGTCATTTCCACCAGTGATATCT
GCTCACACTTGTCCCTAGTCCTCTCCgctatttttatgatttttatgatt
ttgataatgCAAATAAAGAAATGGAGAATTAGACTCTTGGCTTGAAATTG
ATTTCTGTTGTTTATATAAAAAGTTTATTGTCCAATCACATCACTAAGTT
TATTATCTAACTTTTAGTTTAATTTGAATTCCTTCCGGATTAGCAACACC
ATGCAAGATACCAATGGTTTCTCTTAGCTCTTCCGTTTTTTGCATTGCCA
GAATCTCAAATCTGGATAATAAATGGTAGATGGTCACTTTAAGTTCCATC
ATTGCAAAACGCATTCCAATGCAATTTCGAGGTCCTGCCGAGAACGGAAT
AAAACTAAACGTGCTGGAAGCTGAGGGTTCGTTGCTCGAGAATCTCTCTG
GTTTGAAAGTCCCAGCATCCTCCCAGATCTTTGAATCACGGTGCAATGCT
AAGATATCAAAAGCGATTGTGGTGCCTTTAGGATAATGGATTCCATCTAC
GTTGAAACCTTCATTTAAATTGCGGCTTGGTAATGGAACAGGTGGATGGA
TCCTCAATGACTCCTTGATCACACATTCAATATACTTCATTTCTTTTACT
GCCTGATCGATTGGGATACCAAGGTTCCTGATCCTTTGAGCCTCCTCATA
AGCCAAAGCCTGGTGTTTAGGGTGTGAGCCAAGCATAAATAAACACCAGC
TTAAACCAATTCCAACTGTATCATAACCTGCGAAGATGAAGGTCTGGGTA
TCATAGAAAAGATCCTCGACAGTGACTTCACCTTTATTGATGTTGGTCAG
CATTTTATCCAAGAAGATAACTTTCTTATTCCTGCTGTCTATATTTGATG
GTATGTCTTCTTCTGAATCGTTTTTCAATTTCTCGATACGCTTTTCGATC
ATGGTAGTACCGAACTTCTTGATGAAATCCAACCTCTGGTAATATTGTTT
ACCAATAGGAAACAATTTAAGAATGTGTTTGTTCCAGTACCATAAGCATT
TTGAACGGGTAATAACAAATTCCAAAATGAAATCAATGGACTCTACAAAG
TGAACAATTTCTGTTTTCTCTTCGTCAGCACATTTGACGCCCTTGAAAGC
TGTCTCTAAGAAATCACCCATTTCAACGCCCATCATGGTCTGACACATAA
CTCCGATAGAGTGCCATTTCATTGCTTTGCAAGCATCAAATGAGTCTCCC
TTCACAGCAAGTTTTTCAAGACTTTCACATAATTTCGTGGTTAGATTTTC
AATAGTCGGGAAGAAGTTATCAAGGATATTAAAATGAAATGATGGGGTCA
ACATTTTACGTTTGTTTCGCCAATGAATGCCGGTAGTAAGAAGCAGTGAA
GATCCAAGCCAGTCGTTGAGGATCCAATAAGAAACGGATTTGGTGATGTT
GGTGTTACTAACCAAGAGTTTTTCAATGACTTTCTGGTCTCTGGTGATCA
GATACTTATCAACACCGAGCCACATGATTTTAGTATCTTTATCTCCAAGC
CATTTGAAATGCTCCCTAAAAAAGTCCTCCTCGTTCAATTGGCTTAAGCC
AGGCAGCTGACCAATGaaaggatagattttgaaaggAATGGGATCGAAGT
GATTCCAAGGAGCTGACAACCGTTGCCAGTACAGTTTAACAGCAAAGTAT
ACCAACAGAAGAAAGCCAACCAACTCGATGATCATGGTTATATATTTAAA
TCAGTTTCCT Coding sequence (CDS) from alignment at scaffold_305:131436..133195 >TCONS_00058104 ID=TCONS_00058104|Name=TCONS_00058104|organism=Clytia hemisphaerica|type=CDS|length=1533bp|location=Sequence derived from alignment at scaffold_305:131436..133195 (Clytia hemisphaerica)
TTATCTAACTTTTAGTTTAATTTGAATTCCTTCCGGATTAGCAACACCAT
GCAAGATACCAATGGTTTCTCTTAGCTCTTCCGTTTTTTGCATTGCCAGA
ATCTCAAATCTGGATAATAAATGGTAGATGGTCACTTTAAGTTCCATCAT
TGCAAAACGCATTCCAATGCAATTTCGAGGTCCTGCCGAGAACGGAATAA
AACTAAACGTGCTGGAAGCTGAGGGTTCGTTGCTCGAGAATCTCTCTGGT
TTGAAAGTCCCAGCATCCTCCCAGATCTTTGAATCACGGTGCAATGCTAA
GATATCAAAAGCGATTGTGGTGCCTTTAGGATAATGGATTCCATCTACGT
TGAAACCTTCATTTAAATTGCGGCTTGGTAATGGAACAGGTGGATGGATC
CTCAATGACTCCTTGATCACACATTCAATATACTTCATTTCTTTTACTGC
CTGATCGATTGGGATACCAAGGTTCCTGATCCTTTGAGCCTCCTCATAAG
CCAAAGCCTGGTGTTTAGGGTGTGAGCCAAGCATAAATAAACACCAGCTT
AAACCAATTCCAACTGTATCATAACCTGCGAAGATGAAGGTCTGGGTATC
ATAGAAAAGATCCTCGACAGTGACTTCACCTTTATTGATGTTGGTCAGCA
TTTTATCCAAGAAGATAACTTTCTTATTCCTGCTGTCTATATTTGATGGT
ATGTCTTCTTCTGAATCGTTTTTCAATTTCTCGATACGCTTTTCGATCAT
GGTAGTACCGAACTTCTTGATGAAATCCAACCTCTGGTAATATTGTTTAC
CAATAGGAAACAATTTAAGAATGTGTTTGTTCCAGTACCATAAGCATTTT
GAACGGGTAATAACAAATTCCAAAATGAAATCAATGGACTCTACAAAGTG
AACAATTTCTGTTTTCTCTTCGTCAGCACATTTGACGCCCTTGAAAGCTG
TCTCTAAGAAATCACCCATTTCAACGCCCATCATGGTCTGACACATAACT
CCGATAGAGTGCCATTTCATTGCTTTGCAAGCATCAAATGAGTCTCCCTT
CACAGCAAGTTTTTCAAGACTTTCACATAATTTCGTGGTTAGATTTTCAA
TAGTCGGGAAGAAGTTATCAAGGATATTAAAATGAAATGATGGGGTCAAC
ATTTTACGTTTGTTTCGCCAATGAATGCCGGTAGTAAGAAGCAGTGAAGA
TCCAAGCCAGTCGTTGAGGATCCAATAAGAAACGGATTTGGTGATGTTGG
TGTTACTAACCAAGAGTTTTTCAATGACTTTCTGGTCTCTGGTGATCAGA
TACTTATCAACACCGAGCCACATGATTTTAGTATCTTTATCTCCAAGCCA
TTTGAAATGCTCCCTAAAAAAGTCCTCCTCGTTCAATTGGCTTAAGCCAG
GCAGCTGACCAATGaaaggatagattttgaaaggAATGGGATCGAAGTGA
TTCCAAGGAGCTGACAACCGTTGCCAGTACAGTTTAACAGCAAAGTATAC
CAACAGAAGAAAGCCAACCAACTCGATGATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058104-exon-scaffold_305-1491911889:131436..133195 | TCONS_00058104-exon-scaffold_305-1491911889:131436..133195 | Clytia hemisphaerica | exon |
| TCONS_00058104-exon-scaffold_305-1510915933:131436..133195 | TCONS_00058104-exon-scaffold_305-1510915933:131436..133195 | Clytia hemisphaerica | exon |
| TCONS_00058104-exon-scaffold_305-1575043694:131436..133195 | TCONS_00058104-exon-scaffold_305-1575043694:131436..133195 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_305 | supercontig | scaffold_305:131436..133195 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005506 | iron ion binding |
| GO:0020037 | heme binding |
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055114 | oxidation-reduction process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055114 |
oxidation-reduction process |
| molecular_function |
GO:0020037 |
heme binding |
| molecular_function |
GO:0005506 |
iron ion binding |
| molecular_function |
GO:0016705 |
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen |
Blast
BLAST of TCONS_00058104 vs. Swiss-Prot (Human)
Match: CP4V2 (Cytochrome P450 4V2 OS=Homo sapiens GN=CYP4V2 PE=1 SV=2) HSP 1 Score: 236.498 bits (602), Expect = 1.669e-69 Identity = 152/495 (30.71%), Postives = 254/495 (51.31%), Query Frame = 2
Query: 104 WNHFDPIP--FKIYPFIGQLPGLSQLNEEDFFREHFKWLGDKDTKIM---WLGVDKYLITRDQKVIEKLLVSNTNITKSVSYWILNDWLGSSLLLTTGIHWRNKRKMLTPSFHFNILDNFFPTIENLTTKLCESLEKLAVKGDSFDACKAMKWHSIGVMCQTMMGVEMGDFLETAFKGVKCADEEKTEIVHFVESIDFILEFVITRSKCLWYWNKHILKLFPIGKQYYQRLDFIKKFGTTMIEKRIEKLK--NDSEEDIPSNIDSRNKKVIFLDKML--TNINKGEVTVEDLFYDTQTFIFAGYDTVGIGLSWCLFMLGSHPKHQALAYEEAQRI--RNLGIPIDQAVKEMKYIECVIKESLRIHPPVPLPSRNLNEGFNVDGIHYPKGTTIAFDILALHRDSKIWEDAGTFKPERFSSNEPSASSTFSFIPFSAGPRNCIGMRFAMMELKVTIYHLLSRFEILAMQKTEELRETIGILHGVANPEGIQIKLKVR 1555
W PIP + YP +G L + + +FF++ ++ + + W+G + + + +E +L S+ I KS Y L WLG LL +TG WR++RKMLTP+FHF IL++F + L + LEK + ++F+ + ++ ++C+T MG +G + + +V ++ + E + R K W W +F G ++ + L + F ++I +R ++ D D + S+NK+ FLD +L T+ ++ ED+ + TF+F G+DT ++W L++LGS+P+ Q E + ++ + +K+++Y+ECVIKE+LR+ P VPL +R+++E V G KGT ALHRD + + + F+PERF ++++PFSAGPRNCIG +FA+ME K + +L F I + QK EEL ++ +N GI IKLK R
Sbjct: 44 WQQMRPIPTVARAYPLVGH-ALLMKPDGREFFQQIIEYTEEYRHMPLLKLWVGPVPMVALYNAENVEVILTSSKQIDKSSMYKFLEPWLGLGLLTSTGNKWRSRRKMLTPTFHFTILEDFLDIMNEQANILVKKLEK-HINQEAFNCFFYITLCALDIICETAMGKNIG--------------AQSNDDSEYVRAVYRMSEMIFRRIKMPWLWLDLWYLMFKEGWEHKKSLQILHTFTNSVIAERANEMNANEDCRGDGRGSAPSKNKRRAFLDLLLSVTDDEGNRLSHEDIREEVDTFMFEGHDTTAAAINWSLYLLGSNPEVQKKVDHELDDVFGKSDRPATVEDLKKLRYLECVIKETLRLFPSVPLFARSVSEDCEVAGYRVLKGTEAVIIPYALHRDPRYFPNPEEFQPERFFPENAQGRHPYAYVPFSAGPRNCIGQKFAVMEEKTILSCILRHFWIESNQKREELGLEGQLILRPSN--GIWIKLKRR 520
The following BLAST results are available for this feature:
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