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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058101 ID=TCONS_00058101|Name=TCONS_00058101|organism=Clytia hemisphaerica|type=transcript|length=948bp
TACAAAAGATCCTTATCAACAACAAGTCATATATGATATTTTATGACTCA
GGATGTGATGATTTCATCGTCCGCAATCAAGCTGTCAAGCAACTTGGAAC
TGATGCTGAACACCAATGCAAGCTGCCCATCAACCTTggaggagttggtg
attcttcCAAGTCAATAACAACCAATATCTACTCAATCAAATTTCCAACT
TGGGATGGTTCACTTGCAACATTCACCGGAATCTCACTGGAAAAGATCAC
AGCCACGTTTCCAACATATCATCTCAATGGGCAAGTCAAACGCGATATCG
ATCAAGCATACAAAAAGATCGGAGGAAACCCGTCAAAACTTCCACAACTT
CCACCAACAGTCGAAGGAGATTTTGACTTTATGGTTGGCATAAGATACTT
GCGTTACCACCCCAGATTTGTATTTCAATTACCCTCTGGTCTGACCATTT
ATGAATCAATCTTCAAAAATCCTGATGGCAGTCGAGGAGTGATTGGTGGA
CCACATCAGCTATTCACAATGATACATCAACAACACAATAAAGGCAAGAA
TGATTTCTACACGAACCAACTCAAAATCTACAATGCTGGATACAGAGTTA
ACCCTGATGTTCCACTGCTCTGCACCAAGAATACACTCAGTGTTTCATCT
TTCGCTTCTCAACAAGAAAGTTCATTTGATGTAGCAGAAAATGCAGGCTC
TGAAATATCGTATCGGTGTTCAAAGTGTCGCTCATGTGATGATTGCAAAT
CAAACGGCTCAATCGAGGCTACAAGCATACGAGAAGAAATTGAACAAGAA
CTGATTAACAAGTCTGTTGTCGTATCACCTGAAGACAAGATTACCGTGGC
AACATTACCATTTACCCATGATCTAGTCACCCGACTAGCACCAAATCGAT
CAAAAGCAATGAAGGTCTATCAACAACAGGTTTCAAAGCTCAACAAGC Run BLAST on NCBI protein sequence of TCONS_00058101-protein >TCONS_00058101-protein ID=TCONS_00058101-protein|Name=TCONS_00058101-protein|organism=Clytia hemisphaerica|type=polypeptide|length=315bp
QKILINNKSYMIFYDSGCDDFIVRNQAVKQLGTDAEHQCKLPINLGGVGD
SSKSITTNIYSIKFPTWDGSLATFTGISLEKITATFPTYHLNGQVKRDID
QAYKKIGGNPSKLPQLPPTVEGDFDFMVGIRYLRYHPRFVFQLPSGLTIY
ESIFKNPDGSRGVIGGPHQLFTMIHQQHNKGKNDFYTNQLKIYNAGYRVN
PDVPLLCTKNTLSVSSFASQQESSFDVAENAGSEISYRCSKCRSCDDCKS
NGSIEATSIREEIEQELINKSVVVSPEDKITVATLPFTHDLVTRLAPNRS
KAMKVYQQQVSKLNK Run BLAST on NCBI transcript from alignment at scaffold_305:120395..121342 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058101 ID=TCONS_00058101|Name=TCONS_00058101|organism=Clytia hemisphaerica|type=transcript|length=948bp|location=Sequence derived from alignment at scaffold_305:120395..121342 (Clytia hemisphaerica)
GCTTGTTGAGCTTTGAAACCTGTTGTTGATAGACCTTCATTGCTTTTGAT
CGATTTGGTGCTAGTCGGGTGACTAGATCATGGGTAAATGGTAATGTTGC
CACGGTAATCTTGTCTTCAGGTGATACGACAACAGACTTGTTAATCAGTT
CTTGTTCAATTTCTTCTCGTATGCTTGTAGCCTCGATTGAGCCGTTTGAT
TTGCAATCATCACATGAGCGACACTTTGAACACCGATACGATATTTCAGA
GCCTGCATTTTCTGCTACATCAAATGAACTTTCTTGTTGAGAAGCGAAAG
ATGAAACACTGAGTGTATTCTTGGTGCAGAGCAGTGGAACATCAGGGTTA
ACTCTGTATCCAGCATTGTAGATTTTGAGTTGGTTCGTGTAGAAATCATT
CTTGCCTTTATTGTGTTGTTGATGTATCATTGTGAATAGCTGATGTGGTC
CACCAATCACTCCTCGACTGCCATCAGGATTTTTGAAGATTGATTCATAA
ATGGTCAGACCAGAGGGTAATTGAAATACAAATCTGGGGTGGTAACGCAA
GTATCTTATGCCAACCATAAAGTCAAAATCTCCTTCGACTGTTGGTGGAA
GTTGTGGAAGTTTTGACGGGTTTCCTCCGATCTTTTTGTATGCTTGATCG
ATATCGCGTTTGACTTGCCCATTGAGATGATATGTTGGAAACGTGGCTGT
GATCTTTTCCAGTGAGATTCCGGTGAATGTTGCAAGTGAACCATCCCAAG
TTGGAAATTTGATTGAGTAGATATTGGTTGTTATTGACTTGgaagaatca
ccaactcctccAAGGTTGATGGGCAGCTTGCATTGGTGTTCAGCATCAGT
TCCAAGTTGCTTGACAGCTTGATTGCGGACGATGAAATCATCACATCCTG
AGTCATAAAATATCATATATGACTTGTTGTTGATAAGGATCTTTTGTA Coding sequence (CDS) from alignment at scaffold_305:120395..121342 >TCONS_00058101 ID=TCONS_00058101|Name=TCONS_00058101|organism=Clytia hemisphaerica|type=CDS|length=945bp|location=Sequence derived from alignment at scaffold_305:120395..121342 (Clytia hemisphaerica)
CTTGTTGAGCTTTGAAACCTGTTGTTGATAGACCTTCATTGCTTTTGATC
GATTTGGTGCTAGTCGGGTGACTAGATCATGGGTAAATGGTAATGTTGCC
ACGGTAATCTTGTCTTCAGGTGATACGACAACAGACTTGTTAATCAGTTC
TTGTTCAATTTCTTCTCGTATGCTTGTAGCCTCGATTGAGCCGTTTGATT
TGCAATCATCACATGAGCGACACTTTGAACACCGATACGATATTTCAGAG
CCTGCATTTTCTGCTACATCAAATGAACTTTCTTGTTGAGAAGCGAAAGA
TGAAACACTGAGTGTATTCTTGGTGCAGAGCAGTGGAACATCAGGGTTAA
CTCTGTATCCAGCATTGTAGATTTTGAGTTGGTTCGTGTAGAAATCATTC
TTGCCTTTATTGTGTTGTTGATGTATCATTGTGAATAGCTGATGTGGTCC
ACCAATCACTCCTCGACTGCCATCAGGATTTTTGAAGATTGATTCATAAA
TGGTCAGACCAGAGGGTAATTGAAATACAAATCTGGGGTGGTAACGCAAG
TATCTTATGCCAACCATAAAGTCAAAATCTCCTTCGACTGTTGGTGGAAG
TTGTGGAAGTTTTGACGGGTTTCCTCCGATCTTTTTGTATGCTTGATCGA
TATCGCGTTTGACTTGCCCATTGAGATGATATGTTGGAAACGTGGCTGTG
ATCTTTTCCAGTGAGATTCCGGTGAATGTTGCAAGTGAACCATCCCAAGT
TGGAAATTTGATTGAGTAGATATTGGTTGTTATTGACTTGgaagaatcac
caactcctccAAGGTTGATGGGCAGCTTGCATTGGTGTTCAGCATCAGTT
CCAAGTTGCTTGACAGCTTGATTGCGGACGATGAAATCATCACATCCTGA
GTCATAAAATATCATATATGACTTGTTGTTGATAAGGATCTTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058101-exon-scaffold_305-1491911889:120395..121342 | TCONS_00058101-exon-scaffold_305-1491911889:120395..121342 | Clytia hemisphaerica | exon |
| TCONS_00058101-exon-scaffold_305-1510915933:120395..121342 | TCONS_00058101-exon-scaffold_305-1510915933:120395..121342 | Clytia hemisphaerica | exon |
| TCONS_00058101-exon-scaffold_305-1575043694:120395..121342 | TCONS_00058101-exon-scaffold_305-1575043694:120395..121342 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_305 | supercontig | scaffold_305:120395..121342 . |
Blast
The following BLAST results are available for this feature:
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