TCONS_00058066 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058066
Unique NameTCONS_00058066
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length615

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058066 ID=TCONS_00058066|Name=TCONS_00058066|organism=Clytia hemisphaerica|type=transcript|length=615bp
TGTGAAAGTATGTCGGAAGGTAAAGTCGTCGACTGCATATATTTCGATTT
CGCGAAAGCGTTTGATACCGTGCCCCATCGCCgactttgcaaaaagttag
aAGGATGTGGAATCACTGGAACAACCAAAAATTGGATTACATCTTTTCTC
AAGGGACGAAAGCAACTAGTGAAAGTGAACCAATCTCACTCAAAGCTAGA
CGATGTAATCAGCGGTATACCACAAGGAAGTGTATTAGGACCTCTACTTT
TTGTGCTGTATATAAACGATCTTCCTGACAAAGTTGTTTCCGACCTATTA
CTTTTTGCAGATGACACGAAGGTATTCAAAGAGGTCAATTCCATCAATGA
TTCTCTTGTCATTCAGAAGGATGTAGACACATTGAATGAATGGTCTAAAG
ATTGGCTCTTAAAGTTCCATCCCGATAAatgtcatgttttaacacttGGC
AAACTAGCTAACATAAAGCACGCACATCCTTATTCTCTCGCTGGTAATCA
ACTGGAGCATGTTTTCGAGGAGAAAGACTTGGGAGTTTTGGTGGATGCTG
AGCTGATGTTTGAAGAACATATAGCCAAACAGGTAAACAAAGCGAATTCG
ACACTTGGTATTATN
Run BLAST on NCBI

protein sequence of TCONS_00058066-protein

>TCONS_00058066-protein ID=TCONS_00058066-protein|Name=TCONS_00058066-protein|organism=Clytia hemisphaerica|type=polypeptide|length=205bp
CESMSEGKVVDCIYFDFAKAFDTVPHRRLCKKLEGCGITGTTKNWITSFL
KGRKQLVKVNQSHSKLDDVISGIPQGSVLGPLLFVLYINDLPDKVVSDLL
LFADDTKVFKEVNSINDSLVIQKDVDTLNEWSKDWLLKFHPDKCHVLTLG
KLANIKHAHPYSLAGNQLEHVFEEKDLGVLVDAELMFEEHIAKQVNKANS
TLGIX
Run BLAST on NCBI

transcript from alignment at scaffold_304:60265..60879

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058066 ID=TCONS_00058066|Name=TCONS_00058066|organism=Clytia hemisphaerica|type=transcript|length=615bp|location=Sequence derived from alignment at scaffold_304:60265..60879 (Clytia hemisphaerica)
NATAATACCAAGTGTCGAATTCGCTTTGTTTACCTGTTTGGCTATATGTT
CTTCAAACATCAGCTCAGCATCCACCAAAACTCCCAAGTCTTTCTCCTCG
AAAACATGCTCCAGTTGATTACCAGCGAGAGAATAAGGATGTGCGTGCTT
TATGTTAGCTAGTTTGCCaagtgttaaaacatgacatTTATCGGGATGGA
ACTTTAAGAGCCAATCTTTAGACCATTCATTCAATGTGTCTACATCCTTC
TGAATGACAAGAGAATCATTGATGGAATTGACCTCTTTGAATACCTTCGT
GTCATCTGCAAAAAGTAATAGGTCGGAAACAACTTTGTCAGGAAGATCGT
TTATATACAGCACAAAAAGTAGAGGTCCTAATACACTTCCTTGTGGTATA
CCGCTGATTACATCGTCTAGCTTTGAGTGAGATTGGTTCACTTTCACTAG
TTGCTTTCGTCCCTTGAGAAAAGATGTAATCCAATTTTTGGTTGTTCCAG
TGATTCCACATCCTtctaactttttgcaaagtcGGCGATGGGGCACGGTA
TCAAACGCTTTCGCGAAATCGAAATATATGCAGTCGACGACTTTACCTTC
CGACATACTTTCACA

Coding sequence (CDS) from alignment at scaffold_304:60265..60879

>TCONS_00058066 ID=TCONS_00058066|Name=TCONS_00058066|organism=Clytia hemisphaerica|type=CDS|length=615bp|location=Sequence derived from alignment at scaffold_304:60265..60879 (Clytia hemisphaerica)
NATAATACCAAGTGTCGAATTCGCTTTGTTTACCTGTTTGGCTATATGTT
CTTCAAACATCAGCTCAGCATCCACCAAAACTCCCAAGTCTTTCTCCTCG
AAAACATGCTCCAGTTGATTACCAGCGAGAGAATAAGGATGTGCGTGCTT
TATGTTAGCTAGTTTGCCaagtgttaaaacatgacatTTATCGGGATGGA
ACTTTAAGAGCCAATCTTTAGACCATTCATTCAATGTGTCTACATCCTTC
TGAATGACAAGAGAATCATTGATGGAATTGACCTCTTTGAATACCTTCGT
GTCATCTGCAAAAAGTAATAGGTCGGAAACAACTTTGTCAGGAAGATCGT
TTATATACAGCACAAAAAGTAGAGGTCCTAATACACTTCCTTGTGGTATA
CCGCTGATTACATCGTCTAGCTTTGAGTGAGATTGGTTCACTTTCACTAG
TTGCTTTCGTCCCTTGAGAAAAGATGTAATCCAATTTTTGGTTGTTCCAG
TGATTCCACATCCTtctaactttttgcaaagtcGGCGATGGGGCACGGTA
TCAAACGCTTTCGCGAAATCGAAATATATGCAGTCGACGACTTTACCTTC
CGACATACTTTCACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036590XLOC_036590Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058066-exon-scaffold_304-1491911889:60265..60879TCONS_00058066-exon-scaffold_304-1491911889:60265..60879Clytia hemisphaericaexon
TCONS_00058066-exon-scaffold_304-1510915933:60265..60879TCONS_00058066-exon-scaffold_304-1510915933:60265..60879Clytia hemisphaericaexon
TCONS_00058066-exon-scaffold_304-1575043694:60265..60879TCONS_00058066-exon-scaffold_304-1575043694:60265..60879Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058066-proteinTCONS_00058066-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_304supercontigscaffold_304:60265..60879 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.33176	4.1785	6.62622	5.20688	1.7674	2.76898	4.4412	4.50329	4.70208	5.49981	4.66833	2.679	3.68366	2.41417	3.41335	2.40519	2.35468	2.72038	1.67203	1.61773	4.08153	4.549	1.71867	1.87662	3.3536	4.15893	4.29229	5.11772	2.83274	2.66804
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058066 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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