|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058059 ID=TCONS_00058059|Name=TCONS_00058059|organism=Clytia hemisphaerica|type=transcript|length=1165bp
NNTTAAGCAtgtaataagcataaactatgcctggatgctttgagaactta
agcatacacgagcctgaccaaggggcatacacttgcttataaaaaaaaaa
catgtaacgcTCTTGTTGACTCAGCACAATGGCGAGAGAAACGGatgata
cacccctgtatcagtgacccggtcaagGATCCGTCCCGATGAAAACACGC
GTACCATCGCCAATGTTGATGGTTGTTACCATTATGAGCTGTTTACAGAG
AGCGTGCTGCTTGAGAGTCGTGAAGAGGAAAACAAGAACCacctttttta
tcaaatttaacaATTCATAAAATGATATACGTTACGAAATATATACAACA
TTAAAAAAgtggccaaaaataaaaaatgaggcCATTGATCTTTACAATCA
AATTAATGAATAGACTGTAACTTCGttggtctttcttttctttctattgg
cgttttttttttcattctcttACTCACACGCCACTGTCTCAATGCCGCCC
CGGTGAAGATTTTTTCCTTCAGTGtggataaaaatgagaagtAAAGTCAT
TTGGTTGTTTTAAAGTGGGTTAAAACTTCAGGTTATTTTTTCCACCGACG
ACTAttttttggctaaattttccagtggggcggaGGCTGGCGGAGTGCTC
CACCGGATCTCTGATACGAGGGTATTCTCCAGAGGGTTTCCAGATTCTCG
CCCTCACCAATGGATGTGTATCAATATGATATTACGACGTTGGAAAATGT
AGAAAATACACGTTTCACCTGGATAAATGATCGCAATTGTATTcccataa
aaatgaaaactgaaaagaaaaaaaagaaatagcgAGGGAAGGATTGTTGT
GATTCATCCAATCTAGACCGCTGGAGAACTAAAAATAAACAGAGTGGCAA
GATCAGGATTCTGAAACATCGTTATCACAATGCCCGTATTCTAAGTTTTG
TATAGTATTATTCCGCATCCGAAAATCGAAATTATGGCCGCGTGGATAAA
TTCCTTCTCCTATTCCAGAGCACAAGGAGAACGCGTGTTTAATTAAATTC
CAAATCAAAAtacatagtcgaacgtgcgcaacgcactgggctcaacttca
gtggcttcaaatcattcataggcccaattgtagacccccagatattcacc
caatgaacaagtgtg Run BLAST on NCBI transcript from alignment at scaffold_304:274155..275796- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058059 ID=TCONS_00058059|Name=TCONS_00058059|organism=Clytia hemisphaerica|type=transcript|length=1642bp|location=Sequence derived from alignment at scaffold_304:274155..275796- (Clytia hemisphaerica)
NNTTAAGCATGTAATAAGCATAAACTATGCCTGGATGCTTTGAGAACTTA
AGCATACACGAGCCTGACCAAGGGGCATACACTTGCTTATAAAAAAAAAA
CATGTAACGCTCTTGTTGACTCAGCACAATGGCGAGAGAAACGGATGATA
CACCCCTGTATCAGTGACCCGGTCAAGGATCCGTCCCGATGAAAACACGG
TGAGAAAAATACAAAAAAAGACCTAACACTAACACGTTCACTGCCAAGCC
ACTTTAAGAATTTTGACTTCATTGAATTTCATCAAAAGTTTGACTTTCAG
AGGCTCCGGTAGCCTTGGTTTTGCTTTAAGTGCCTACAAATCACCTACCG
ATTGACGCAGAATTTAAAAAAGACACCAAAAATGCAAAAACGAAGCAAGC
AAAAGTAGTATTTGCTTTAAGAGTTATGGCCCTTTGGAGTACTGTCGGTA
TTTTGACACCTATACTACAACTAGGTCAACCCATCTATGCTGAAATCTAA
ATCGATTTATGTGCTTCCCAATTAGTGTGCGTTACTTGTCACTGTAACTT
CGGCAATTTATCTACTGACTTTTGAGTGACGGTCAATTTGAGTTTCAAGC
TTAACAACAAAATCTACCGTACCACGGATCTGCTACAGTCATTTGATAGT
AACTTTGATTTTCATTCTTTATTTAGCGTACCATCGCCAATGTTGATGGT
TGTTACCATTATGAGCTGTTTACAGAGAGCGTGCTGCTTGAGAGTCGTGA
AGAGGAAAACAAGAACCACCTTTTTTATCAAATTTAACAATTCATAAAAT
GATATACGTTACGAAATATATACAACATTAAAAAAGTGGCCAAAAATAAA
AAATGAGGCCATTGATCTTTACAATCAAATTAATGAATAGACTGTAACTT
CGTTGGTCTTTCTTTTCTTTCTATTGGCGTTTTTTTTTTCATTCTCTTAC
TCACACGCCACTGTCTCAATGCCGCCCCGGTGAAGATTTTTTCCTTCAGT
GTGGATAAAAATGAGAAGTAAAGTCATTTGGTTGTTTTAAAGTGGGTTAA
AACTTCAGGTTATTTTTTCCACCGACGACTATTTTTTGGCTAAATTTTCC
AGTGGGGCGGAGGCTGGCGGAGTGCTCCACCGGATCTCTGATACGAGGGT
ATTCTCCAGAGGGTTTCCAGATTCTCGCCCTCACCAATGGATGTGTATCA
ATATGATATTACGACGTTGGAAAATGTAGAAAATACACGTTTCACCTGGA
TAAATGATCGCAATTGTATTCCCATAAAAATGAAAACTGAAAAGAAAAAA
AAGAAATAGCGAGGGAAGGATTGTTGTGATTCATCCAATCTAGACCGCTG
GAGAACTAAAAATAAACAGAGTGGCAAGATCAGGATTCTGAAACATCGTT
ATCACAATGCCCGTATTCTAAGTTTTGTATAGTATTATTCCGCATCCGAA
AATCGAAATTATGGCCGCGTGGATAAATTCCTTCTCCTATTCCAGAGCAC
AAGGAGAACGCGTGTTTAATTAAATTCCAAATCAAAATACATAGTCGAAC
GTGCGCAACGCACTGGGCTCAACTTCAGTGGCTTCAAATCATTCATAGGC
CCAATTGTAGACCCCCAGATATTCACCCAATGAACAAGTGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058059-exon-scaffold_304-1575043694:275598..275796 | TCONS_00058059-exon-scaffold_304-1575043694:275598..275796 | Clytia hemisphaerica | exon |
| TCONS_00058059-exon-scaffold_304-1575043694:274155..275120 | TCONS_00058059-exon-scaffold_304-1575043694:274155..275120 | Clytia hemisphaerica | exon |
| TCONS_00058059-exon-scaffold_304-1510915933:275598..275796 | TCONS_00058059-exon-scaffold_304-1510915933:275598..275796 | Clytia hemisphaerica | exon |
| TCONS_00058059-exon-scaffold_304-1510915933:274155..275120 | TCONS_00058059-exon-scaffold_304-1510915933:274155..275120 | Clytia hemisphaerica | exon |
| TCONS_00058059-exon-scaffold_304-1491911889:275598..275796 | TCONS_00058059-exon-scaffold_304-1491911889:275598..275796 | Clytia hemisphaerica | exon |
| TCONS_00058059-exon-scaffold_304-1491911889:274155..275120 | TCONS_00058059-exon-scaffold_304-1491911889:274155..275120 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_304 | supercontig | scaffold_304:274155..275796 - |
Blast
The following BLAST results are available for this feature:
|
