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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058018 ID=TCONS_00058018|Name=TCONS_00058018|organism=Clytia hemisphaerica|type=transcript|length=1669bp
atttgaaatagaaatagttttttttgtaaaattagaCAAAGGGCAACCAA
TGGGtggaataaaaataacaaaattcttaaaagaaagaaagaaaactttt
tgaaaagattaaCATCACAAGATTATACTGTCAAACAGACTATATTGAGC
ACTGgtttattttgagcaattttgaggaTACGAGATGAAAATTATATCGT
TATTTTTTGCATCTTTTTGCATCAATGCTGTTTATTCCAAGTCTTTGAAC
GATAAAGATGAAGATCAACAAAGCCATGGTAACATGGTTGGCAAAGGTCC
ATTTCGAATTCCACACAAGCGAGAATCTTACGGTATGattgtcaaaaaag
aaaatgaagcagAAGATCACACCTGGAAAGAAAGTACAAAACAAAATGGT
CTTCAAAAACGAAAGGTTGAGACGTCAGGTTGGCTTGatatgaagaagaa
gaagagatcAGGTGATGAGGAAGATGATTTCCAAAAACCAGGGATCGATG
AAGTTAAGGATAAAGCATTCATTCCAATGAAATTATACGCTTTATCCAGA
AAACGAAGTTTTGCAGCTGAAAATAATCCCATTTCAAAATGGTACAAAAG
AGACAGCGAAAATGGTAACCCAATTCATAAATGGTATAAGAGCGAAGTGA
GAAATGCAGATGATGATGTGAATGGGGAAATTTTCGAAGATAAATTGGAA
CAGGATCGACTTCCAACGCGATGGATGGATGAGCTTTCTCGATCGGGCAC
CAATCAAGATCTTGAAGATGAATATGAAATTAAAGAGCGCAATTTCAAAG
AAGATGATGAACGAAAGATGAGACAAAACGGACTGCAAAAGAAAGATGAC
TATGGACAATATGATGTTGAGTACGAGAAGATCATGAGACGGCAAGCCGA
CGAACAACAAAAGAAGAACGACGACTATAGACGTTACAATGAAGAGAACG
AGAAGATCATGAGACGGCAAGCCGACGAACAACAAAAGAAGAACGACGAC
TATAGACGTTACAATGAAGAGAACGAGAAGATCATGAGACGGCAAGCCGA
CGAACAACAAAAGAAGAACGACGACTATAGAAGTTACAATGAAGAGAACG
AGAAGATTATGAGACGGCAAGCCGACGAACAACGCAAGAAGAACGACTAC
TATAGACGTTACAATGAAGAGAACGAGAAGATTATGAGACGGCAAGCCGA
CGAACAACGCAAGAAGAATAACGACTATAGACGTTACAATGAAGAGTACG
AGAATCTCATGAGACGACAAGCCGACGAACAACAAAATGAAAACCTTCCA
ACACGTTGGATGAAAGATGAATATGATCGAATAATGCCAGCCACCTTCAC
TCTTCGCCAACATCCAGATACCTTTATACCAAAGCGTGAACATGTCACAG
GTTACTTCGATGACGATGATGCTATCACGGCTAATGGTAACCGCCGTGAT
TCACGAAGGTTCAGAAAATAACGAAAAAGAGGAGTGAGAAAGTCAATGGG
GTAAAACACTGGATGCTTTTAACGTAAATCTCAAGAATATTTCAtgtttt
aaagaagaaaaaaatgaacttttttcattaatgatattttgaaatattaa
aaacatttaatgttttcaattttagatATAATAGATAATACAAGACTATG
TGcacagttaaaaaaaaac Run BLAST on NCBI protein sequence of TCONS_00058018-protein >TCONS_00058018-protein ID=TCONS_00058018-protein|Name=TCONS_00058018-protein|organism=Clytia hemisphaerica|type=polypeptide|length=428bp
MKIISLFFASFCINAVYSKSLNDKDEDQQSHGNMVGKGPFRIPHKRESYG
MIVKKENEAEDHTWKESTKQNGLQKRKVETSGWLDMKKKKRSGDEEDDFQ
KPGIDEVKDKAFIPMKLYALSRKRSFAAENNPISKWYKRDSENGNPIHKW
YKSEVRNADDDVNGEIFEDKLEQDRLPTRWMDELSRSGTNQDLEDEYEIK
ERNFKEDDERKMRQNGLQKKDDYGQYDVEYEKIMRRQADEQQKKNDDYRR
YNEENEKIMRRQADEQQKKNDDYRRYNEENEKIMRRQADEQQKKNDDYRS
YNEENEKIMRRQADEQRKKNDYYRRYNEENEKIMRRQADEQRKKNNDYRR
YNEEYENLMRRQADEQQNENLPTRWMKDEYDRIMPATFTLRQHPDTFIPK
REHVTGYFDDDDAITANGNRRDSRRFRK Run BLAST on NCBI transcript from alignment at scaffold_304:239860..242119+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058018 ID=TCONS_00058018|Name=TCONS_00058018|organism=Clytia hemisphaerica|type=transcript|length=2260bp|location=Sequence derived from alignment at scaffold_304:239860..242119+ (Clytia hemisphaerica)
atttgaaatagaaatagttttttttgtaaaattagaCAAAGGGCAACCAA
TGGGtggaataaaaataacaaaattcttaaaagaaagaaagaaaactttt
tgaaaagattaaCATCACAAGATTATACTGTCAAACAGACTATATTGAGC
ACTGgtttattttgagcaattttgaggaTACGAGATGAAAATTATATCGT
TATTTTTTGCATCTTTTTGCATCAATGCTGTTTATTCCAAGTCTTTGAAC
GATAAAGATGGTAAGATTTTACATAATCAGACACTGCTATTCAGGTTAAG
tcccggtggaattttttcaCACGGTTGGGAAAAATGGGGGgttagaaatt
ctattgctcccagctcaaaaattccaattaaaattgttttgaagtgCCAT
CTTTTTGACGGTGGTCCCAACGGGTCTGTTGGACGAAACTGaataaaaga
aaagatttgATGGATGGATTATGTTTACTAGAAATCTTACACACCCCTAT
CTCATTCACCCAGTGGAAGAACTAACCACAGTTAAAGATTTCCAAGTAGG
AATGAGAGCTTAGTGTTATTTTCCGATGGGAGTTAAATTCAGGGTCCATT
TCTCACTAGGAATAGTTTTCCGGTCAGCTTTTTAATAGGTAAAAGGTCCC
TTCCGATCTTGTTTACATAACAACAATGGAACAGAGTTCAACATCTCTTT
GAGGGGGTATCTGACAGATTTGTGCATCTTTATCCctttaaattgaatag
aaaatagcatgAAACAGATTCACCAATCCTATGAAATAAGCTAATTGGTG
ACCGAAGGGTTTTCAAACATCGTGTTATTAATTCTTCATTTTTGGTTTTA
GAAGATCAACAAAGCCATGGTAACATGGTTGGCAAAGGTCCATTTCGAAT
TCCACACAAGCGAGAATCTTACGGTATGattgtcaaaaaagaaaatgaag
cagAAGATCACACCTGGAAAGAAAGTACAAAACAAAATGGTCTTCAAAAA
CGAAAGGTTGAGACGTCAGGTTGGCTTGatatgaagaagaagaagagatc
AGGTGATGAGGAAGATGATTTCCAAAAACCAGGGATCGATGAAGTTAAGG
ATAAAGCATTCATTCCAATGAAATTATACGCTTTATCCAGAAAACGAAGT
TTTGCAGCTGAAAATAATCCCATTTCAAAATGGTACAAAAGAGACAGCGA
AAATGGTAACCCAATTCATAAATGGTATAAGAGCGAAGTGAGAAATGCAG
ATGATGATGTGAATGGGGAAATTTTCGAAGATAAATTGGAACAGGATCGA
CTTCCAACGCGATGGATGGATGAGCTTTCTCGATCGGGCACCAATCAAGA
TCTTGAAGATGAATATGAAATTAAAGAGCGCAATTTCAAAGAAGATGATG
AACGAAAGATGAGACAAAACGGACTGCAAAAGAAAGATGACTATGGACAA
TATGATGTTGAGTACGAGAAGATCATGAGACGGCAAGCCGACGAACAACA
AAAGAAGAACGACGACTATAGACGTTACAATGAAGAGAACGAGAAGATCA
TGAGACGGCAAGCCGACGAACAACAAAAGAAGAACGACGACTATAGACGT
TACAATGAAGAGAACGAGAAGATCATGAGACGGCAAGCCGACGAACAACA
AAAGAAGAACGACGACTATAGAAGTTACAATGAAGAGAACGAGAAGATTA
TGAGACGGCAAGCCGACGAACAACGCAAGAAGAACGACTACTATAGACGT
TACAATGAAGAGAACGAGAAGATTATGAGACGGCAAGCCGACGAACAACG
CAAGAAGAATAACGACTATAGACGTTACAATGAAGAGTACGAGAATCTCA
TGAGACGACAAGCCGACGAACAACAAAATGAAAACCTTCCAACACGTTGG
ATGAAAGATGAATATGATCGAATAATGCCAGCCACCTTCACTCTTCGCCA
ACATCCAGATACCTTTATACCAAAGCGTGAACATGTCACAGGTTACTTCG
ATGACGATGATGCTATCACGGCTAATGGTAACCGCCGTGATTCACGAAGG
TTCAGAAAATAACGAAAAAGAGGAGTGAGAAAGTCAATGGGGTAAAACAC
TGGATGCTTTTAACGTAAATCTCAAGAATATTTCAtgttttaaagaagaa
aaaaatgaacttttttcattaatgatattttgaaatattaaaaacattta
atgttttcaattttagatATAATAGATAATACAAGACTATGTGcacagtt
aaaaaaaaac Coding sequence (CDS) from alignment at scaffold_304:239860..242119+ >TCONS_00058018 ID=TCONS_00058018|Name=TCONS_00058018|organism=Clytia hemisphaerica|type=CDS|length=2574bp|location=Sequence derived from alignment at scaffold_304:239860..242119+ (Clytia hemisphaerica)
ATGAAAATTATATCGTTATTTTTTGCATCTTTTTGCATCAATGCTGTTTA
TTCCAAGTCTTTGAACGATAAAGATGAAGATCAACAAAGCCATGGTAACA
TGGTTGGCAAAGGTCCATTTCGAATTCCACACAAGCGAGAATCTTACGGT
ATGattgtcaaaaaagaaaatgaagcagAAGATCACACCTGGAAAGAAAG
TACAAAACAAAATGGTCTTCAAAAACGAAAGGTTGAGACGTCAGGTTGGC
TTGatatgaagaagaagaagagatcAGGTGATGAGGAAGATGATTTCCAA
AAACCAGGGATCGATGAAGTTAAGGATAAAGCATTCATTCCAATGAAATT
ATACGCTTTATCCAGAAAACGAAGTTTTGCAGCTGAAAATAATCCCATTT
CAAAATGGTACAAAAGAGACAGCGAAAATGGTAACCCAATTCATAAATGG
TATAAGAGCGAAGTGAGAAATGCAGATGATGATGTGAATGGGGAAATTTT
CGAAGATAAATTGGAACAGGATCGACTTCCAACGCGATGGATGGATGAGC
TTTCTCGATCGGGCACCAATCAAGATCTTGAAGATGAATATGAAATTAAA
GAGCGCAATTTCAAAGAAGATGATGAACGAAAGATGAGACAAAACGGACT
GCAAAAGAAAGATGACTATGGACAATATGATGTTGAGTACGAGAAGATCA
TGAGACGGCAAGCCGACGAACAACAAAAGAAGAACGACGACTATAGACGT
TACAATGAAGAGAACGAGAAGATCATGAGACGGCAAGCCGACGAACAACA
AAAGAAGAACGACGACTATAGACGTTACAATGAAGAGAACGAGAAGATCA
TGAGACGGCAAGCCGACGAACAACAAAAGAAGAACGACGACTATAGAAGT
TACAATGAAGAGAACGAGAAGATTATGAGACGGCAAGCCGACGAACAACG
CAAGAAGAACGACTACTATAGACGTTACAATGAAGAGAACGAGAAGATTA
TGAGACGGCAAGCCGACGAACAACGCAAGAAGAATAACGACTATAGACGT
TACAATGAAGAGTACGAGAATCTCATGAGACGACAAGCCGACGAACAACA
AAATGAAAACCTTCCAACACGTTGGATGAAAGATGAATATGATCGAATAA
TGCCAGCCACCTTCACTCTTCGCCAACATCCAGATACCTTTATACCAAAG
CGTGAACATGTCACAGGTTACTTCGATGACGATGATGCTATCACGGCTAA
TGGTAACCGCCGTGATTCACGAAGGTTCAGAAAATAAATGAAAATTATAT
CGTTATTTTTTGCATCTTTTTGCATCAATGCTGTTTATTCCAAGTCTTTG
AACGATAAAGATGAAGATCAACAAAGCCATGGTAACATGGTTGGCAAAGG
TCCATTTCGAATTCCACACAAGCGAGAATCTTACGGTATGattgtcaaaa
aagaaaatgaagcagAAGATCACACCTGGAAAGAAAGTACAAAACAAAAT
GGTCTTCAAAAACGAAAGGTTGAGACGTCAGGTTGGCTTGatatgaagaa
gaagaagagatcAGGTGATGAGGAAGATGATTTCCAAAAACCAGGGATCG
ATGAAGTTAAGGATAAAGCATTCATTCCAATGAAATTATACGCTTTATCC
AGAAAACGAAGTTTTGCAGCTGAAAATAATCCCATTTCAAAATGGTACAA
AAGAGACAGCGAAAATGGTAACCCAATTCATAAATGGTATAAGAGCGAAG
TGAGAAATGCAGATGATGATGTGAATGGGGAAATTTTCGAAGATAAATTG
GAACAGGATCGACTTCCAACGCGATGGATGGATGAGCTTTCTCGATCGGG
CACCAATCAAGATCTTGAAGATGAATATGAAATTAAAGAGCGCAATTTCA
AAGAAGATGATGAACGAAAGATGAGACAAAACGGACTGCAAAAGAAAGAT
GACTATGGACAATATGATGTTGAGTACGAGAAGATCATGAGACGGCAAGC
CGACGAACAACAAAAGAAGAACGACGACTATAGACGTTACAATGAAGAGA
ACGAGAAGATCATGAGACGGCAAGCCGACGAACAACAAAAGAAGAACGAC
GACTATAGACGTTACAATGAAGAGAACGAGAAGATCATGAGACGGCAAGC
CGACGAACAACAAAAGAAGAACGACGACTATAGAAGTTACAATGAAGAGA
ACGAGAAGATTATGAGACGGCAAGCCGACGAACAACGCAAGAAGAACGAC
TACTATAGACGTTACAATGAAGAGAACGAGAAGATTATGAGACGGCAAGC
CGACGAACAACGCAAGAAGAATAACGACTATAGACGTTACAATGAAGAGT
ACGAGAATCTCATGAGACGACAAGCCGACGAACAACAAAATGAAAACCTT
CCAACACGTTGGATGAAAGATGAATATGATCGAATAATGCCAGCCACCTT
CACTCTTCGCCAACATCCAGATACCTTTATACCAAAGCGTGAACATGTCA
CAGGTTACTTCGATGACGATGATGCTATCACGGCTAATGGTAACCGCCGT
GATTCACGAAGGTTCAGAAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058018-exon-scaffold_304-1491911889:239860..240119 | TCONS_00058018-exon-scaffold_304-1491911889:239860..240119 | Clytia hemisphaerica | exon |
| TCONS_00058018-exon-scaffold_304-1510915933:239860..240119 | TCONS_00058018-exon-scaffold_304-1510915933:239860..240119 | Clytia hemisphaerica | exon |
| TCONS_00058018-exon-scaffold_304-1575043694:239860..240119 | TCONS_00058018-exon-scaffold_304-1575043694:239860..240119 | Clytia hemisphaerica | exon |
| TCONS_00058018-exon-scaffold_304-1491911889:240711..242119 | TCONS_00058018-exon-scaffold_304-1491911889:240711..242119 | Clytia hemisphaerica | exon |
| TCONS_00058018-exon-scaffold_304-1510915933:240711..242119 | TCONS_00058018-exon-scaffold_304-1510915933:240711..242119 | Clytia hemisphaerica | exon |
| TCONS_00058018-exon-scaffold_304-1575043694:240711..242119 | TCONS_00058018-exon-scaffold_304-1575043694:240711..242119 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_304 | supercontig | scaffold_304:239860..242119 + |
Blast
The following BLAST results are available for this feature:
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