TCONS_00058017 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058017
Unique NameTCONS_00058017
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length903

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058017 ID=TCONS_00058017|Name=TCONS_00058017|organism=Clytia hemisphaerica|type=transcript|length=903bp
ttcttttagatACGGAGTTCGGACAAGACGCACAAGCGATTTTCGAACga
gcacaaaaacaaaacaaagaactCGGTGGGAAAGAGGATGATAAAATTTA
CAGAGGGCAGACAGGGTATGCACAATACATCGAGAAACGAGACACAGCTG
CTGGTAACGCCTCCAGTGGAATGGTCAGGTAGGTGTTATAAAAATTGTTG
CAAGGATGGCCGAATGGTCAAGACGCCAGCGCCTGCGACCAGGGGTTCTC
AGTTCGAACCTCTCACTTCTCTTTCCATAATTCGGTTTAGTCAATAGAAA
CCtgagccggctggccgtggaccctgTGAAAACATTGTCTAGGCACTACC
TGTCCTAGCTttacaaaaatctaattttcattaGAACAGAGAAAATCTGA
AAACGGGTTTTGGATAAATTAgtcaaaatgatttgaaaagGGGGTTTGAA
AGTAGTTAAAGGGGTCAAACAAACGGGGTAATGGCAAATAGCCTTCTGAG
GAGCAAATATAATTTGATATTGACTTCAATCATGAGAAGATGGGGAAATG
GAGAAGGGGATAAATGGCTTCCTGAGATTATGTAACCTCGGGTGTCTGCA
CGAATCCAAGGGTTAATTTGGTGGTGTGTTCAGAATTTCATTGAAACACG
ACAACATTCAAAACACCGTCTAAAAGTTCTAAATTACCCTGGGCCATCCA
CATTAACTCTAAAAACTGTGGACGATTTATTCTTCTAAGATCTCTTTCAT
TTCATATTCCCAACAGACTGCCTGGTGTCGTACCTTCCCCATTTTAACGC
GTACTCTAACGTAGATtaggtaccttatcggggaaaacttcgtcggggaa
aagtgacgaaattttggccaagtgacgaatatttttccccgacgaaaatt
ttc
Run BLAST on NCBI

transcript from alignment at scaffold_303:41776..42678

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058017 ID=TCONS_00058017|Name=TCONS_00058017|organism=Clytia hemisphaerica|type=transcript|length=903bp|location=Sequence derived from alignment at scaffold_303:41776..42678 (Clytia hemisphaerica)
gaaaattttcgtcggggaaaaatattcgtcacttggccaaaatttcgtca
cttttccccgacgaagttttccccgataaggtacctaATCTACGTTAGAG
TACGCGTTAAAATGGGGAAGGTACGACACCAGGCAGTCTGTTGGGAATAT
GAAATGAAAGAGATCTTAGAAGAATAAATCGTCCACAGTTTTTAGAGTTA
ATGTGGATGGCCCAGGGTAATTTAGAACTTTTAGACGGTGTTTTGAATGT
TGTCGTGTTTCAATGAAATTCTGAACACACCACCAAATTAACCCTTGGAT
TCGTGCAGACACCCGAGGTTACATAATCTCAGGAAGCCATTTATCCCCTT
CTCCATTTCCCCATCTTCTCATGATTGAAGTCAATATCAAATTATATTTG
CTCCTCAGAAGGCTATTTGCCATTACCCCGTTTGTTTGACCCCTTTAACT
ACTTTCAAACCCCcttttcaaatcattttgacTAATTTATCCAAAACCCG
TTTTCAGATTTTCTCTGTTCtaatgaaaattagatttttgtaaAGCTAGG
ACAGGTAGTGCCTAGACAATGTTTTCAcagggtccacggccagccggctc
aGGTTTCTATTGACTAAACCGAATTATGGAAAGAGAAGTGAGAGGTTCGA
ACTGAGAACCCCTGGTCGCAGGCGCTGGCGTCTTGACCATTCGGCCATCC
TTGCAACAATTTTTATAACACCTACCTGACCATTCCACTGGAGGCGTTAC
CAGCAGCTGTGTCTCGTTTCTCGATGTATTGTGCATACCCTGTCTGCCCT
CTGTAAATTTTATCATCCTCTTTCCCACCGagttctttgttttgtttttg
tgctcGTTCGAAAATCGCTTGTGCGTCTTGTCCGAACTCCGTatctaaaa
gaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036573XLOC_036573Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058017-exon-scaffold_303-1491911889:41776..42678TCONS_00058017-exon-scaffold_303-1491911889:41776..42678Clytia hemisphaericaexon
TCONS_00058017-exon-scaffold_303-1510915933:41776..42678TCONS_00058017-exon-scaffold_303-1510915933:41776..42678Clytia hemisphaericaexon
TCONS_00058017-exon-scaffold_303-1575043694:41776..42678TCONS_00058017-exon-scaffold_303-1575043694:41776..42678Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_303supercontigscaffold_303:41776..42678 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.0315	10.2656	10.3056	9.62008	0.766449	1.05237	1.05663	1.66483	3.50256	3.32345	3.19834	3.38734	9.69633	7.27818	4.12128	4.162	5.48222	5.02863	15.016	21.637	2.804	2.33471	8.00592	5.69441	1.48062	1.2049	2.97062	2.5551	4.87885	5.1136
Blast
[Close]
BLAST of TCONS_00058017 vs. Swiss-Prot (Human)
Match: R113A (RING finger protein 113A OS=Homo sapiens GN=RNF113A PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.948e-17
Identity = 39/58 (67.24%), Postives = 47/58 (81.03%), Query Frame = 3 
Query:    6 LDTEFGQDAQAIFERAQKQNKELGGKEDDKIYRGQTGYAQYIEKRDTAAGNASSGMVR 179
            LDTE  +DAQAIFER+QK  +EL GKEDDKIYRG   Y +Y++ +DT+ GNASSGMVR
Sbjct:  122 LDTEKERDAQAIFERSQKIQEELRGKEDDKIYRGINNYQKYMKPKDTSMGNASSGMVR 179
The following BLAST results are available for this feature:
BLAST of TCONS_00058017 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
R113A5.948e-1767.24RING finger protein 113A OS=Homo sapiens GN=RNF113... [more]
back to top