TCONS_00058013 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058013
Unique NameTCONS_00058013
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length314

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058013 ID=TCONS_00058013|Name=TCONS_00058013|organism=Clytia hemisphaerica|type=transcript|length=314bp
CAGTTATTTCTTATGGGTCACATATCACATTAAGGAACACACATTCAAAA
CAGTGTTGGTTGCATTCACACAAACATTTGTATCCAGTGAAATACGAAGA
TGGTAGAGGGAGTAGTGCACAGCAACAAGTCACGTGTTATGCATTTAAAG
ATATCAATAACTGGTTTATTGTCAAACATCCGGACAGGTGTGTTTATCAG
GTTCTTTAAGGACTTCATGTACTCCATTTCCACTGGAAATACCACTATAA
TCTCCCAGTTGTTTTGAGAGCACCACTCCTCTCCCTTCATCAATATGAGC
TTTAAAATGAgctt
Run BLAST on NCBI

transcript from alignment at scaffold_303:18271..18584

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058013 ID=TCONS_00058013|Name=TCONS_00058013|organism=Clytia hemisphaerica|type=transcript|length=314bp|location=Sequence derived from alignment at scaffold_303:18271..18584 (Clytia hemisphaerica)
aagcTCATTTTAAAGCTCATATTGATGAAGGGAGAGGAGTGGTGCTCTCA
AAACAACTGGGAGATTATAGTGGTATTTCCAGTGGAAATGGAGTACATGA
AGTCCTTAAAGAACCTGATAAACACACCTGTCCGGATGTTTGACAATAAA
CCAGTTATTGATATCTTTAAATGCATAACACGTGACTTGTTGCTGTGCAC
TACTCCCTCTACCATCTTCGTATTTCACTGGATACAAATGTTTGTGTGAA
TGCAACCAACACTGTTTTGAATGTGTGTTCCTTAATGTGATATGTGACCC
ATAAGAAATAACTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036569XLOC_036569Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058013-exon-scaffold_303-1491911889:18271..18584TCONS_00058013-exon-scaffold_303-1491911889:18271..18584Clytia hemisphaericaexon
TCONS_00058013-exon-scaffold_303-1510915933:18271..18584TCONS_00058013-exon-scaffold_303-1510915933:18271..18584Clytia hemisphaericaexon
TCONS_00058013-exon-scaffold_303-1575043694:18271..18584TCONS_00058013-exon-scaffold_303-1575043694:18271..18584Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_303supercontigscaffold_303:18271..18584 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.06758	1.88557	0.448166	1.59444	0	0	0	0	11.2805	13.7401	14.0196	6.73183	5.36476	5.79546	3.87969	4.97063	7.84898	4.57318	2.25666	5.69081	1.24937	1.39006	3.60819	1.99101	0	0.548393	2.69203	1.76731	1.50338	2.05514
Blast
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BLAST of TCONS_00058013 vs. Swiss-Prot (Human)
Match: POMT1 (Protein O-mannosyl-transferase 1 OS=Homo sapiens GN=POMT1 PE=1 SV=3)

HSP 1 Score: 91.6633 bits (226), Expect = 3.562e-22
Identity = 40/63 (63.49%), Postives = 49/63 (77.78%), Query Frame = 3 
Query:    6 ISYGSHITLRNTHSKQ--CWLHSHKHLYPVKYEDGRGSSAQQQVTCYAFKDINNWFIVKHPDR 188
            +++GS +TLRN   K   CWLHSH+  YP+ YE+GRGSS QQQVTCY FKD+NNW+IVK P R
Sbjct:  321 VAFGSQVTLRNVFGKPVPCWLHSHQDTYPMIYENGRGSSHQQQVTCYPFKDVNNWWIVKDPRR 383
The following BLAST results are available for this feature:
BLAST of TCONS_00058013 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
POMT13.562e-2263.49Protein O-mannosyl-transferase 1 OS=Homo sapiens G... [more]
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