TCONS_00058007 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058007
Unique NameTCONS_00058007
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1071

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058007 ID=TCONS_00058007|Name=TCONS_00058007|organism=Clytia hemisphaerica|type=transcript|length=1071bp
TGTTTTTGTATCACTCTTTGAATATGCAAAGGCTTCTCTCCAATACGACC
AATGTGCGGGTGGAGATGTAATTTTCACTGAACCAACACAAGGAATGGAG
CTAATACACCCAGATCCTGCAAATCGGTGGTATTTTGAAATCCCATCGAC
CACAGTTCATGGATGTTTTGCTGGATGTCGCCAAGAAGTCGAATGTAAAT
CGGCAATGTTCTTTGAAGATGATGGGAGATGTTTATTGCAAAATTTAGAT
TTGTTTGGGCTTAAACCTTTTATCAAGTTATCAACAAGAGTGCGTTACTT
TGAGAAGCATGAATGTTCACCAACCTTTGCACaagaaattaaatttctgc
AAGTGATAACGGATGCTATGGATTGCAAAGATATCTATCAGAAAGGATGG
CGTACCAATGGCATCTATGGTGTCAAAAACTTGAAGGATGACGGTACCTT
CAAAGTGATTCTGTGTGCAATGGACATCCTTGGAGGTGGTTGGTCCGTTA
TTCAACAGCGAATCAAGATGGATATGAGCTTTAAACGAAAAAGGAATGTA
TACACCGATGGTTTCGGACAACTTAATGGTGACTTTTGGTATGGGAACGA
TAAGATTCATGGTTTGACACGCGGTAACCAAAATGAGGTTTTATTTATCt
tgaaagatgatgatgatgaactTCACTACCCTCTGTACGATGGATTCAAT
GTGGGTACAGCAGCGGAAAATTATAAGCTGACTGTCGGTCACTATCGTTA
CATTGGCAAAGGTAAAGAAGGGCTGGATGCATTCGAAAAACACAATAATA
TTGAGTTCTCGACCCATGATGACGATAATGACAAAGACACGTCTataaat
tgttcaaaatcaCTTGGGGGTAGGGGAGGGTTTTGGTTCACAGATTGCCG
CAGTGTAAACATCAATGGAGATAATGAAGGAGAAaaaaagggtggtatca
aaTTCAGTGGTCTCACTACAGAAACGAGCAATTTAAAAGAAACCACCATG
CTTATTCGAAGAAAATAAAACACTTATGAACATTTATaaaacacctaaaa
attttcacaccttgagcatga
Run BLAST on NCBI

protein sequence of TCONS_00058007-protein

>TCONS_00058007-protein ID=TCONS_00058007-protein|Name=TCONS_00058007-protein|organism=Clytia hemisphaerica|type=polypeptide|length=338bp
VFVSLFEYAKASLQYDQCAGGDVIFTEPTQGMELIHPDPANRWYFEIPST
TVHGCFAGCRQEVECKSAMFFEDDGRCLLQNLDLFGLKPFIKLSTRVRYF
EKHECSPTFAQEIKFLQVITDAMDCKDIYQKGWRTNGIYGVKNLKDDGTF
KVILCAMDILGGGWSVIQQRIKMDMSFKRKRNVYTDGFGQLNGDFWYGND
KIHGLTRGNQNEVLFILKDDDDELHYPLYDGFNVGTAAENYKLTVGHYRY
IGKGKEGLDAFEKHNNIEFSTHDDDNDKDTSINCSKSLGGRGGFWFTDCR
SVNINGDNEGEKKGGIKFSGLTTETSNLKETTMLIRRK
Run BLAST on NCBI

transcript from alignment at scaffold_302:410032..411102

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058007 ID=TCONS_00058007|Name=TCONS_00058007|organism=Clytia hemisphaerica|type=transcript|length=1071bp|location=Sequence derived from alignment at scaffold_302:410032..411102 (Clytia hemisphaerica)
tcatgctcaaggtgtgaaaatttttaggtgttttATAAATGTTCATAAGT
GTTTTATTTTCTTCGAATAAGCATGGTGGTTTCTTTTAAATTGCTCGTTT
CTGTAGTGAGACCACTGAAtttgataccaccctttttTTCTCCTTCATTA
TCTCCATTGATGTTTACACTGCGGCAATCTGTGAACCAAAACCCTCCCCT
ACCCCCAAGtgattttgaacaatttatAGACGTGTCTTTGTCATTATCGT
CATCATGGGTCGAGAACTCAATATTATTGTGTTTTTCGAATGCATCCAGC
CCTTCTTTACCTTTGCCAATGTAACGATAGTGACCGACAGTCAGCTTATA
ATTTTCCGCTGCTGTACCCACATTGAATCCATCGTACAGAGGGTAGTGAa
gttcatcatcatcatctttcaaGATAAATAAAACCTCATTTTGGTTACCG
CGTGTCAAACCATGAATCTTATCGTTCCCATACCAAAAGTCACCATTAAG
TTGTCCGAAACCATCGGTGTATACATTCCTTTTTCGTTTAAAGCTCATAT
CCATCTTGATTCGCTGTTGAATAACGGACCAACCACCTCCAAGGATGTCC
ATTGCACACAGAATCACTTTGAAGGTACCGTCATCCTTCAAGTTTTTGAC
ACCATAGATGCCATTGGTACGCCATCCTTTCTGATAGATATCTTTGCAAT
CCATAGCATCCGTTATCACTTgcagaaatttaatttcttGTGCAAAGGTT
GGTGAACATTCATGCTTCTCAAAGTAACGCACTCTTGTTGATAACTTGAT
AAAAGGTTTAAGCCCAAACAAATCTAAATTTTGCAATAAACATCTCCCAT
CATCTTCAAAGAACATTGCCGATTTACATTCGACTTCTTGGCGACATCCA
GCAAAACATCCATGAACTGTGGTCGATGGGATTTCAAAATACCACCGATT
TGCAGGATCTGGGTGTATTAGCTCCATTCCTTGTGTTGGTTCAGTGAAAA
TTACATCTCCACCCGCACATTGGTCGTATTGGAGAGAAGCCTTTGCATAT
TCAAAGAGTGATACAAAAACA

Coding sequence (CDS) from alignment at scaffold_302:410032..411102

>TCONS_00058007 ID=TCONS_00058007|Name=TCONS_00058007|organism=Clytia hemisphaerica|type=CDS|length=1017bp|location=Sequence derived from alignment at scaffold_302:410032..411102 (Clytia hemisphaerica)
TTATTTTCTTCGAATAAGCATGGTGGTTTCTTTTAAATTGCTCGTTTCTG
TAGTGAGACCACTGAAtttgataccaccctttttTTCTCCTTCATTATCT
CCATTGATGTTTACACTGCGGCAATCTGTGAACCAAAACCCTCCCCTACC
CCCAAGtgattttgaacaatttatAGACGTGTCTTTGTCATTATCGTCAT
CATGGGTCGAGAACTCAATATTATTGTGTTTTTCGAATGCATCCAGCCCT
TCTTTACCTTTGCCAATGTAACGATAGTGACCGACAGTCAGCTTATAATT
TTCCGCTGCTGTACCCACATTGAATCCATCGTACAGAGGGTAGTGAagtt
catcatcatcatctttcaaGATAAATAAAACCTCATTTTGGTTACCGCGT
GTCAAACCATGAATCTTATCGTTCCCATACCAAAAGTCACCATTAAGTTG
TCCGAAACCATCGGTGTATACATTCCTTTTTCGTTTAAAGCTCATATCCA
TCTTGATTCGCTGTTGAATAACGGACCAACCACCTCCAAGGATGTCCATT
GCACACAGAATCACTTTGAAGGTACCGTCATCCTTCAAGTTTTTGACACC
ATAGATGCCATTGGTACGCCATCCTTTCTGATAGATATCTTTGCAATCCA
TAGCATCCGTTATCACTTgcagaaatttaatttcttGTGCAAAGGTTGGT
GAACATTCATGCTTCTCAAAGTAACGCACTCTTGTTGATAACTTGATAAA
AGGTTTAAGCCCAAACAAATCTAAATTTTGCAATAAACATCTCCCATCAT
CTTCAAAGAACATTGCCGATTTACATTCGACTTCTTGGCGACATCCAGCA
AAACATCCATGAACTGTGGTCGATGGGATTTCAAAATACCACCGATTTGC
AGGATCTGGGTGTATTAGCTCCATTCCTTGTGTTGGTTCAGTGAAAATTA
CATCTCCACCCGCACATTGGTCGTATTGGAGAGAAGCCTTTGCATATTCA
AAGAGTGATACAAAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036563XLOC_036563Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058007-proteinTCONS_00058007-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058007-exon-scaffold_302-1491911889:410032..411102TCONS_00058007-exon-scaffold_302-1491911889:410032..411102Clytia hemisphaericaexon
TCONS_00058007-exon-scaffold_302-1510915933:410032..411102TCONS_00058007-exon-scaffold_302-1510915933:410032..411102Clytia hemisphaericaexon
TCONS_00058007-exon-scaffold_302-1575043694:410032..411102TCONS_00058007-exon-scaffold_302-1575043694:410032..411102Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_302supercontigscaffold_302:410032..411102 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.49389	0.842835	1.67762	1.64129	0.111006	0.131578	0.0529144	0.594454	3.71104	2.01912	1.41773	1.83651	7.41796	5.31578	2.07998	1.68037	0.9578	1.23506	7.65648	7.50834	2.74574	2.44564	0.613475	2.01644	3.88863	4.73251	0.451481	0.180687	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002181Fibrinogen_a/b/g_C_dom
IPR003609Pan_app
IPR014716Fibrinogen_a/b/g_C_1
IPR014715Fibrinogen_a/b/g_C_2
Blast
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BLAST of TCONS_00058007 vs. Swiss-Prot (Human)
Match: ANGL7 (Angiopoietin-related protein 7 OS=Homo sapiens GN=ANGPTL7 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.200e-31
Identity = 80/229 (34.93%), Postives = 115/229 (50.22%), Query Frame = 2 
Query:  350 QVITDAM-DCKDIYQKGWRTNGIYGVKNLKDDGTFKV-ILCAMDILGGGWSVIQQRIKMDMSFKRKRNVYTDGFGQLNGDFWYGNDKIHGLTRGNQNEVLFILKDDDDELHYPLYDGFNVGTAAENYKLTVGHYRYIGKGKEGLDAFEKHNNIEFSTHDDDNDKDTSINCSKSLGG--RGGFWFTDCRSVNING-----DNEGEKKGGIKFSGLTTETSNLKETTMLIR 1009
            Q   DA+ DC  +YQK +R +G+Y +      G+ ++ + C M+  GGGW++IQ+R    +SF R    Y  GFG + GDFW GN+ IH L+R     +   ++D +  L Y  Y  F +G    +Y+L +G+Y     G  G DA + HNN  FST D DND     NC        +GG+W+  C   N+NG         +   GI + G    T +LK   M IR
Sbjct:  122 QTSADAIYDCSSLYQKNYRISGVYKLPPDDFLGSPELEVFCDMETSGGGWTIIQRRKSGLVSFYRDWKQYKQGFGSIRGDFWLGNEHIHRLSR-QPTRLRVEMEDWEGNLRYAEYSHFVLGNELNSYRLFLGNY----TGNVGNDALQYHNNTAFSTKDKDND-----NCLDKCAQLRKGGYWYNCCTDSNLNGVYYRLGEHNKHLDGITWYGWHGSTYSLKRVEMKIR 340
The following BLAST results are available for this feature:
BLAST of TCONS_00058007 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ANGL71.200e-3134.93Angiopoietin-related protein 7 OS=Homo sapiens GN=... [more]
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