TCONS_00058006 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058006
Unique NameTCONS_00058006
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length307

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058006 ID=TCONS_00058006|Name=TCONS_00058006|organism=Clytia hemisphaerica|type=transcript|length=307bp
GTTGAAttcgaattttttgattttttgattttttgaagaaaaatgaaatt
tattttcagttatTTTGTATCATAGAGCGGTTCTTTCATTTCTTAGAAGT
TTAGATTTTTCAAGTAATGTTGTAATTGAGGTTTTTTTATCATTGAGTTC
GAATGTTATTACAACATAACTAATGAAGTAGGTAGTAATGAGTAGGTCTA
CAGTGTACCCGGGGGTAAaactttcataatttttttgccTAGTTACTTGA
TCTTGATCCCGTAATAGAATTATAAAAGCTAAGTTAAAATGAATAAATAG
ATCTTGC
Run BLAST on NCBI

transcript from alignment at scaffold_302:407455..407761

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058006 ID=TCONS_00058006|Name=TCONS_00058006|organism=Clytia hemisphaerica|type=transcript|length=307bp|location=Sequence derived from alignment at scaffold_302:407455..407761 (Clytia hemisphaerica)
GCAAGATCTATTTATTCATTTTAACTTAGCTTTTATAATTCTATTACGGG
ATCAAGATCAAGTAACTAggcaaaaaaattatgaaagttTTACCCCCGGG
TACACTGTAGACCTACTCATTACTACCTACTTCATTAGTTATGTTGTAAT
AACATTCGAACTCAATGATAAAAAAACCTCAATTACAACATTACTTGAAA
AATCTAAACTTCTAAGAAATGAAAGAACCGCTCTATGATACAAAataact
gaaaataaatttcatttttcttcaaaaaatcaaaaaatcaaaaaattcga
aTTCAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036562XLOC_036562Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058006-exon-scaffold_302-1491911889:407455..407761TCONS_00058006-exon-scaffold_302-1491911889:407455..407761Clytia hemisphaericaexon
TCONS_00058006-exon-scaffold_302-1510915933:407455..407761TCONS_00058006-exon-scaffold_302-1510915933:407455..407761Clytia hemisphaericaexon
TCONS_00058006-exon-scaffold_302-1575043694:407455..407761TCONS_00058006-exon-scaffold_302-1575043694:407455..407761Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_302supercontigscaffold_302:407455..407761 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.361793	0	0	0	0.487898	0.771087	2.32571	1.30638	0.609752	1.13291	0	0.481904	1.92494	1.24942	0.616314	1.10233	0	0.278378	0	0.8049	1.74901	2.04745	0.414825	0.377136	0	1.73337	1.98436	1.58832	1.60625	0.409128
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058006 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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