TCONS_00058001 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058001
Unique NameTCONS_00058001
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length265

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058001 ID=TCONS_00058001|Name=TCONS_00058001|organism=Clytia hemisphaerica|type=transcript|length=265bp
CTAACACTTCCTATAAAGCGGAGATTAGTTTCAGCTTTGTGCGAAAGAAC
CACTTAATTTTATAAATCCCCTTGAACTAATCTCTACCCGCCACCTTTGT
TTggagttttttcttaaaattagtGTTGATGGCAGAAAAGCCATCTTTAA
TGAACTTGATGATTGAGTTTTAATTATGTTTAATTTGTAATCCCGGGTGT
ATATAAGTTCTTTTGTTTAgtgtcttttcatttcattgcGTCTCATGAGG
CTTCTTTGTTTTGCA
Run BLAST on NCBI

transcript from alignment at scaffold_302:326956..327220

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058001 ID=TCONS_00058001|Name=TCONS_00058001|organism=Clytia hemisphaerica|type=transcript|length=265bp|location=Sequence derived from alignment at scaffold_302:326956..327220 (Clytia hemisphaerica)
TGCAAAACAAAGAAGCCTCATGAGACgcaatgaaatgaaaagacacTAAA
CAAAAGAACTTATATACACCCGGGATTACAAATTAAACATAATTAAAACT
CAATCATCAAGTTCATTAAAGATGGCTTTTCTGCCATCAACactaatttt
aagaaaaaactccAAACAAAGGTGGCGGGTAGAGATTAGTTCAAGGGGAT
TTATAAAATTAAGTGGTTCTTTCGCACAAAGCTGAAACTAATCTCCGCTT
TATAGGAAGTGTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036557XLOC_036557Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058001-exon-scaffold_302-1491911889:326956..327220TCONS_00058001-exon-scaffold_302-1491911889:326956..327220Clytia hemisphaericaexon
TCONS_00058001-exon-scaffold_302-1510915933:326956..327220TCONS_00058001-exon-scaffold_302-1510915933:326956..327220Clytia hemisphaericaexon
TCONS_00058001-exon-scaffold_302-1575043694:326956..327220TCONS_00058001-exon-scaffold_302-1575043694:326956..327220Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_302supercontigscaffold_302:326956..327220 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.53135	3.61487	3.44902	2.03083	3.28634	0.649227	0	0.733283	2.63654	1.3097	0	0.405745	0.405181	0.868884	0.34892	0.371249	0.457348	0.468767	0	2.71078	1.17808	1.72388	0.698534	3.17534	0	2.3351	0.835379	0	0	0.703396
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058001 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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