TCONS_00057997 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057997
Unique NameTCONS_00057997
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length605

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057997 ID=TCONS_00057997|Name=TCONS_00057997|organism=Clytia hemisphaerica|type=transcript|length=605bp
ATtgtctgtgccaaatttcatgcttttatcactatctgaagtatttttgt
acTAACACCTCACTATTAATGTTTTGCCTAATTTCAGTCATAAATAGtct
aatgaaagaaaaagcatGTAGTTGAAGCGTGTAGTTGAAGCAcagtgttt
tgtttttgttgtttgaaatttctttctcGACAAACTTCCAGAATGTTCAA
AATTACATAAGTGTGGTGGCTCGAGCGGAAGCATTCTTGACTTCTTTTGC
aacttatcaaaacaaattgagaaaaaaatagtaCAATGGAACATAAGAAA
TAATGTCGACATAATCTTGTTTATGTCTTGTGCGTCTGACAGAATTCATT
CTCGTTactgtttttaataatttttcaacaTTATTAACATGAGTGAGGGA
GAAAGTCAAAACTTTGCCAAGGAGACATCCCCGTTCCCCAATTATTCCAC
CATTATTGATGCATCCCAAAAAAGTAAGGGTAAGCATCCTCCTACACTCT
TCTCCTAGACTTTCACAAATAAATCATTGCATTGTGTAAGAAATATTTCA
TGATTTGGTAAAATTTGGTAGTTTTGCAATATAaagggggttgtactttt
acggt
Run BLAST on NCBI

transcript from alignment at scaffold_302:244968..245572

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057997 ID=TCONS_00057997|Name=TCONS_00057997|organism=Clytia hemisphaerica|type=transcript|length=605bp|location=Sequence derived from alignment at scaffold_302:244968..245572 (Clytia hemisphaerica)
accgtaaaagtacaacccccttTATATTGCAAAACTACCAAATTTTACCA
AATCATGAAATATTTCTTACACAATGCAATGATTTATTTGTGAAAGTCTA
GGAGAAGAGTGTAGGAGGATGCTTACCCTTACTTTTTTGGGATGCATCAA
TAATGGTGGAATAATTGGGGAACGGGGATGTCTCCTTGGCAAAGTTTTGA
CTTTCTCCCTCACTCATGTTAATAAtgttgaaaaattattaaaaacagtA
ACGAGAATGAATTCTGTCAGACGCACAAGACATAAACAAGATTATGTCGA
CATTATTTCTTATGTTCCATTGtactatttttttctcaatttgttttgat
aagttGCAAAAGAAGTCAAGAATGCTTCCGCTCGAGCCACCACACTTATG
TAATTTTGAACATTCTGGAAGTTTGTCgagaaagaaatttcaaacaacaa
aaacaaaacactgTGCTTCAACTACACGCTTCAACTACatgctttttctt
tcattagaCTATTTATGACTGAAATTAGGCAAAACATTAATAGTGAGGTG
TTAgtacaaaaatacttcagatagtgataaaagcatgaaatttggcacag
acaAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036553XLOC_036553Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057997-exon-scaffold_302-1491911889:244968..245572TCONS_00057997-exon-scaffold_302-1491911889:244968..245572Clytia hemisphaericaexon
TCONS_00057997-exon-scaffold_302-1510915933:244968..245572TCONS_00057997-exon-scaffold_302-1510915933:244968..245572Clytia hemisphaericaexon
TCONS_00057997-exon-scaffold_302-1575043694:244968..245572TCONS_00057997-exon-scaffold_302-1575043694:244968..245572Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_302supercontigscaffold_302:244968..245572 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.537542	0.524188	0.304316	0.595451	0.362452	0.190943	0	0	0.075496	0.093514	0	0.179	0.357502	0.556904	0.152617	0.43675	0.0672551	0.344671	0	0	0.0866209	0.253504	1.02722	0.653727	0.192378	0	0.245692	0.262209	2.48596	1.11443
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057997 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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