TCONS_00057995 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057995
Unique NameTCONS_00057995
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length259

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057995 ID=TCONS_00057995|Name=TCONS_00057995|organism=Clytia hemisphaerica|type=transcript|length=259bp
CGGCATCAAATTTAATGacttttatgttgaaaaatgtaaagaaaatatta
taaatatgTTACATAGAGAAAACTTTTCGATGGAGACGTTGCATCTTCAA
CAATGGGAGATAATTAAAGAAAATGACACATATCTGTGGAAGATTCGTGA
TGATTTTGACATGGACAATcgcgaagaagaaaatgatcgAAAACGTTTTT
ACATGAATTTCCTTTTTCTTCATGTTAACCtgactctttttctttttggg
tTCGCATCG
Run BLAST on NCBI

transcript from alignment at scaffold_302:173971..174229

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057995 ID=TCONS_00057995|Name=TCONS_00057995|organism=Clytia hemisphaerica|type=transcript|length=259bp|location=Sequence derived from alignment at scaffold_302:173971..174229 (Clytia hemisphaerica)
CGATGCGAacccaaaaagaaaaagagtcaGGTTAACATGAAGAAAAAGGA
AATTCATGTAAAAACGTTTTcgatcattttcttcttcgcgATTGTCCATG
TCAAAATCATCACGAATCTTCCACAGATATGTGTCATTTTCTTTAATTAT
CTCCCATTGTTGAAGATGCAACGTCTCCATCGAAAAGTTTTCTCTATGTA
AcatatttataatattttctttacatttttcaacataaaagtCATTAAAT
TTGATGCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036551XLOC_036551Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057995-exon-scaffold_302-1491911889:173971..174229TCONS_00057995-exon-scaffold_302-1491911889:173971..174229Clytia hemisphaericaexon
TCONS_00057995-exon-scaffold_302-1510915933:173971..174229TCONS_00057995-exon-scaffold_302-1510915933:173971..174229Clytia hemisphaericaexon
TCONS_00057995-exon-scaffold_302-1575043694:173971..174229TCONS_00057995-exon-scaffold_302-1575043694:173971..174229Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_302supercontigscaffold_302:173971..174229 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.754682	0	0	0	0.856933	0	0	0	2.70115	0	0.886579	0.460361	0.756958	0	0.500363	0	5.66831	1.48287	0	0	0	0	0	1.27736	0.913948	0.97539	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057995 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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