TCONS_00057991 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057991
Unique NameTCONS_00057991
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length643

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057991 ID=TCONS_00057991|Name=TCONS_00057991|organism=Clytia hemisphaerica|type=transcript|length=643bp
AGAAGCTATAAAGTTGCTGTACATTGGTTATGTTGCTGGATTTCTacgaa
aaacatttaagttgccgccattttgttttgagcataGGCGGTACGTGCTT
TTGGTGGCTCACATAATGTTTTGTAGTGGATTTAAATGTaactgagatat
ttccaagcacaacatgatgtaacagagatggaaatgtgcattataatgaa
ctggaccTAACTTCTGGAGACGCACATTCTCATCTGACACCCGCCACTCA
TAACAGCCTTTCTTCGGTCAAGCCAGCTCATTGCTCATTGTCATCTAGTG
TATGTGAATAAAAATAGGCACACAAAAAGTTTTCATGCCTGCAGAGAGTC
ATGCTGGACTTTCAATTAACTTTTTGACACACTTATGTGGctgttttcac
ccaaatttgatgttatcgCAATATTACCGCAAACTTTGCTATGTATACAT
GACTTTAGCgcaacatgtttttgttgatttttggatattttatcaatttt
tgtgaaatgttttactttaactttNNNNNNNNNNNNNNNNNttcaaatac
aaaactttttggagaaggaatcatgcaaaatattatcattcttttcacaa
ggagggcatgtagaaatactcaaataagtatttttccttcttt
Run BLAST on NCBI

transcript from alignment at scaffold_302:39406..40048

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057991 ID=TCONS_00057991|Name=TCONS_00057991|organism=Clytia hemisphaerica|type=transcript|length=643bp|location=Sequence derived from alignment at scaffold_302:39406..40048 (Clytia hemisphaerica)
aaagaaggaaaaatacttatttgagtatttctacatgccctccttgtgaa
aagaatgataatattttgcatgattccttctccaaaaagttttgtatttg
aaNNNNNNNNNNNNNNNNNaaagttaaagtaaaacatttcacaaaaattg
ataaaatatccaaaaatcaacaaaaacatgttgcGCTAAAGTCATGTATA
CATAGCAAAGTTTGCGGTAATATTGcgataacatcaaatttgggtgaaaa
cagCCACATAAGTGTGTCAAAAAGTTAATTGAAAGTCCAGCATGACTCTC
TGCAGGCATGAAAACTTTTTGTGTGCCTATTTTTATTCACATACACTAGA
TGACAATGAGCAATGAGCTGGCTTGACCGAAGAAAGGCTGTTATGAGTGG
CGGGTGTCAGATGAGAATGTGCGTCTCCAGAAGTTAggtccagttcatta
taatgcacatttccatctctgttacatcatgttgtgcttggaaatatctc
agttACATTTAAATCCACTACAAAACATTATGTGAGCCACCAAAAGCACG
TACCGCCtatgctcaaaacaaaatggcggcaacttaaatgtttttcgtAG
AAATCCAGCAACATAACCAATGTACAGCAACTTTATAGCTTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036547XLOC_036547Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057991-exon-scaffold_302-1491911889:39406..40048TCONS_00057991-exon-scaffold_302-1491911889:39406..40048Clytia hemisphaericaexon
TCONS_00057991-exon-scaffold_302-1510915933:39406..40048TCONS_00057991-exon-scaffold_302-1510915933:39406..40048Clytia hemisphaericaexon
TCONS_00057991-exon-scaffold_302-1575043694:39406..40048TCONS_00057991-exon-scaffold_302-1575043694:39406..40048Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_302supercontigscaffold_302:39406..40048 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.70102	1.2005	2.50162	3.62763	19.7087	16.4686	15.1031	19.9124	12.1339	17.7659	22.9056	12.1653	10.6864	11.6397	5.89115	8.18387	6.32314	6.20446	8.56914	11.0905	4.1689	4.02288	3.16983	1.42307	13.5405	14.8792	2.69215	4.041	5.89015	5.81692
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057991 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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