TCONS_00057989 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057989
Unique NameTCONS_00057989
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length330

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057989 ID=TCONS_00057989|Name=TCONS_00057989|organism=Clytia hemisphaerica|type=transcript|length=330bp
TGCGAGAATAGCTTTACCGTCAGCCGAGAAAGATCTTCTCTAAACGAATC
CCAAGAGAAACATAATGTGATTTCGAAGCAATTATAAGAGCTTTGCTCTG
ACGTCACCAGACATTGATGATAAACGTGCAGATAATTTGGTGCTTTATTA
GTAAAAAGTAAGGTAAagggaaaaccctttttttattagaagtcGATGAT
GGTGGATTTTCTTCATTAGAACATTAGAATATGTCAAATAATTCTTGGAA
AATGCTTGCTTGTAAGTCACCATCTGATCCACATAATATGTTGGATGCAA
ATTCTAATGATTTAAATCTAAGATTATGGT
Run BLAST on NCBI

transcript from alignment at scaffold_302:4412..4741

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057989 ID=TCONS_00057989|Name=TCONS_00057989|organism=Clytia hemisphaerica|type=transcript|length=330bp|location=Sequence derived from alignment at scaffold_302:4412..4741 (Clytia hemisphaerica)
ACCATAATCTTAGATTTAAATCATTAGAATTTGCATCCAACATATTATGT
GGATCAGATGGTGACTTACAAGCAAGCATTTTCCAAGAATTATTTGACAT
ATTCTAATGTTCTAATGAAGAAAATCCACCATCATCgacttctaataaaa
aaagggttttccctTTACCTTACTTTTTACTAATAAAGCACCAAATTATC
TGCACGTTTATCATCAATGTCTGGTGACGTCAGAGCAAAGCTCTTATAAT
TGCTTCGAAATCACATTATGTTTCTCTTGGGATTCGTTTAGAGAAGATCT
TTCTCGGCTGACGGTAAAGCTATTCTCGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036545XLOC_036545Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057989-exon-scaffold_302-1491911889:4412..4741TCONS_00057989-exon-scaffold_302-1491911889:4412..4741Clytia hemisphaericaexon
TCONS_00057989-exon-scaffold_302-1510915933:4412..4741TCONS_00057989-exon-scaffold_302-1510915933:4412..4741Clytia hemisphaericaexon
TCONS_00057989-exon-scaffold_302-1575043694:4412..4741TCONS_00057989-exon-scaffold_302-1575043694:4412..4741Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_302supercontigscaffold_302:4412..4741 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.86445	2.29186	1.06463	2.51806	0	0	0.48424	0.432656	0	0	0	0.195267	0.648401	0.202504	0	0.178665	0	0	0	0.326144	0.551576	0.590253	0	1.73906	0	0.699202	0.538283	0.362845	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057989 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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