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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057980 ID=TCONS_00057980|Name=TCONS_00057980|organism=Clytia hemisphaerica|type=transcript|length=3445bp
ACATCACGAAAACTTTTATTTGATTGCACGAAACCTCTCAGgaattcatt
aaaaacaaaaaatttgtaaaattgacgtcaaatatattcatcaaataaaa
ttaaaatgaaagtaaGATTTACAAAAGAACAAACGGCTTTGTGACAGGAA
GAAGTAACATTTAAATAAAAATGGATGGGGTTCGAACTTCACCAAATAGT
GGAAAAGaacaaaggagttttcgaaaTTTACTCAAAGCTATCGAAAACAA
AAACCAGCAGAACTTTGAAAAACTACTGAAAGGACACGGTGGTACGAAAG
AATTCGTGAATCGATACTTGGACAAAGGACGAAAACCTATCCATGTTGCG
TGCAAGAGTAGAAATACTGTTGCGTTGAAAGCTCTAGTTGGACACGGTGC
TGATATTAATGCCAAATGTAGTAAAGGATACACAGCGTTGCATTACGCAT
GTCGCGCTGCGTGTATTTCCAGTATAGTGTTCTTAGTGGAGATGGGTGCG
GACCTACGTGAAGCAAACAATCCAACCAACGAATCACCTCTTGATTCAAT
CCCGCCAAAAGAACAAGCAAGATTGGGTTCACTATTAAGAACAGCTAcTG
AAAATCGTGAAAAGCATGTGAGCGAATCGGTAAGTCTCGTCTCCAATTAA
AAGTTCTTTTTTGTAGTTCTAAGCAAGCAAGAGTGGACAATTAAAAACGT
AGAAATAGCTATATGGTTTTACACAATTTCTATCATATATTCgtcaatat
tttaaaagttgtcTTCCATTAAAAACTAAAAAGACACCACTCAGAGTTCC
GTGCTTACGCACTAATCATATTTACAGTAATAATAGTATATGATATTcgt
gaaataaataaaatcaaaaagtgctaaaaaaaaattcgaaatgtTCGAAT
GAAATattaagaaataaaaaactaacTTACAATTCCTACACGGTGTTTCA
TGCTGGCGTAATCTTCgaaagaaatgcaataaaatctacaatttcaCAAG
ATTACGATGATTTTcaaccattgacttccaagcccaaaagggctagactc
gagactcctggatgggaaatgaagccacttattttccatccagaacgcca
gcgcgtgttttttttacaagcgttggattaaaagtaaaatctatcgctag
atttcaaaaaatacagttctcaaaaacaaaggaaccgctacaTACAATCC
GTTGTCATGACTGTGGCGCGTTCTAGTCgcattctggatgggaaataagt
ggcttcactttttcttgcctgggaaaggttagagattctactctagctat
tcgggttttaaactcaatggtttaaACATCCTAAGATTGTGCTCATCATA
AAGATAACTCATGAAATGAGTTAAGAGTATAATGGTTCGATTTTGAAAAT
CAGTGTTCTTCATTTCAGAAACGAATATCGAACAGTGCATTTCTCAAAGA
GTTCGTCATATGCGACGAAATTCCATATCTGTGCAACGATCAGATCGAAG
TGGACCAATCAATAGAACTGGCACGTGGAGCACATTTGAATTTTTGTCAT
GGAACATTCAATGGTATGAACGTGATGGTCAAGTATCAAGATAAAGAAAA
AGATGCCCTTGTGTTGAGGGATGAGGTCATCGCTTTAAGGTAGGTTGGAA
ACCCTGACACTCTGAACCAGAATGAGTGAACAGATCCAATATCTATGGAA
ATTCATTGCTGTTCATAATTTAAACCATTTTACATGACAAAAATAATCCT
GATTTCAAAGTCAAAGCTAGAGGGAATTTTCGTAGGTAGAAGGGCATGAA
GGTTATTTCAAGAGGCAAATTCAACAGTAATTGAccagtttgtttacttt
ttcgaGTGAAAGATTAACACAAGTTACACTCAGGTACATAGTACGGTTGA
CTGGCTTTGTTATGAGGTTTTGAACAATAGTAACAGTGGTCTCATTTTTA
CTGCAGGTCCCAttcatactgaatttgaaaatcaattttaacAGGCTATC
CGAAGCTCGATTATTTCTCGTTTTTAGGAAACTCGGTAGCCATGTGAATT
TTGTACAAATCCTTGGTGTGACATGTGTAGACGAGGAATTCAATATCATC
TTCGAAGCACCAGGATATGCTTTTCTTCACCGAGTCTTATTCCAAACGAA
AGTACCAATCAAAAAGGTGGAAGTACTGACTATTTGCAGAGATATTTCAA
ATGCTTTGAGATACATCCACGGTAAAGGGTATTTGCACTGTGCGGTGGCA
AGCTTCAGTGTGGTTCTGGGAAGAGATTTGGATGCTAAGCTTTGCAATTT
CAACTATGTCCAAGAGAAAGACAGAGCAAAGTCAGTCAGTCAACATTCAG
AATTATATCCATACATGAGTGTAGAGCAAAGACAAGGTCATCGATGTAGT
ATCGCTAATGATGTATTCGGCATGGGTATAATAATGGCAGAAATGATAAC
ACAAGAGAGAGCTCATGAAATATTAAGCAAGTCCAAGGGCAAAACATTGA
GAGATGTTTATATGCAAATCTTGAGACACATTGAGCGTTCAGGAGGCAGT
AGTGCCACATTGAAGAATTTAGTGAGTTATTGTATACATTGGGTACCTAA
AGAACGACCAACGGCTGAAATGGTATACGAGTGGACAGATGCCCTTTTAC
AAGATGGACAGGAAGTGGACCTAAAGCTTGGTCGAAGAAGACAATTGGTG
GAGTTACAACTCGACTAAGGAGAAATACTCTTATTCCTAATTGAGCTTGT
ATGATACTGTATATGTTTATGTATCATGCATTTACTAATAGTTTAAATAA
TacatttaaaaataaagaaaaatgaaataaaattgtgCTCATACTTTTTG
TTTTTACCTGTTTCTACATCAAGAATGTGCAAAAAAAAGTGTGCTAGAAC
AAAATTCTAAAATCCCTTAAAAGGAATTCAGAGTGTTAAGTTGTCTCTTC
AAACAAAAGACTTCAAACTCTTATGATGTCTGATCCAATTCAATATATAT
AGACAATGCTACCTTTCTGTATCTGCTTATATGATAATATTCAGTTTTTC
AGTGAATCGATCTAccaaacacaaacaaagcaaAACTTCGTACGCCTCAg
gactttttttcaatcaatcaatggCTTTCAGTGATCTATACATAACATTC
AATGGTTCAATTACTCAAGTTGATAAAACTTTTTCAGCCCTTATTATATT
TCACAATTTGTTTCTTCCCgaaaaaatctttcgtcaaacCTTACTCGTCG
TTATTTCTCTTCTACTCTTCTCTTAATATGTAGGCGCCCACGGTTCCAGA
TCATTGAAACTAACCGGGCGTTTGACACCAGAAGGCGTGGTCATTCTCAT
ATTGAGATTGTCGTCCGCTCCCGTATCCAAGAAAAACACTTCCACGTAAT
AAGCAGTGTCTTTCTCCATTGCGATCGGCCAACTTTCTGAATTCC Run BLAST on NCBI transcript from alignment at scaffold_302:301289..306528- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057980 ID=TCONS_00057980|Name=TCONS_00057980|organism=Clytia hemisphaerica|type=transcript|length=5240bp|location=Sequence derived from alignment at scaffold_302:301289..306528- (Clytia hemisphaerica)
ACATCACGAAAACTTTTATTTGATTGCACGAAACCTCTCAGGAATTCATT
AAAAACAAAAAATTTGTAAAATTGACGTCAAATATATTCATCAAATAAAA
TTAAAATGAAAGTAAGATTTACAAAAGAACAAACGGCTTTGTGACAGGAA
GAAGTAACATTTAAATAAAAATGGATGGGGTTCGAACTTCACCAAATAGT
GGAAAAGAACAAAGGAGTTTTCGAAATTTACTCAAAGCTATCGAAAACAA
AAACCAGCAGAACTTTGAAAAACTACTGAAAGGACACGGTGGTACGAAAG
AATTCGTGAATCGATACTTGGACAAAGGACGAAAACCTATCCATGTTGCG
TGCAAGAGTAGAAATACTGTTGCGTTGAAAGCTCTAGTTGGACACGGTGC
TGATATTAATGCGTAAGTGGATTTCATTATACTAGTTCTATTTCTATACA
TTTATCTGCACGAGCCTTAAAAAAGTTAATATCGCAAATAAAATGAGAAT
CTTTTACTGGGCGAAATAAGAGATTTCCAATCCTGGAAATATCTTGAAAA
TGTGATATTTCCATATACATTATTAGTAAATATGGAAATAATGACTTTTT
TATATTTCCAAATAAATTAGGATATTTTCTTCCAAAGTTTAGGAAATATC
ATATTTCATGATATTTCCAAATCTGAAATTCATTGAAATATCATATTTTC
AAAATATTTCCAACTTTTGGAAATATTTCCAACTTTTGGAAATATTTCCA
ACTTTTGGAAATATGATATTTCCAAAATTTAAAAACATTTTTAAAATACG
ATGTTTCAGTCCTGACTTTGGAAATATAGAAGTCATATTTTCATATTTAC
TAATAATGTATATGGAAATATCATATTTTCAAGATATTTCCAGCATTGGA
AATAAATTTATCTTGGTTACTGTTAATCAGACTCTAACTGGAGAGAGTAT
AGTAGAAAAACAATAAACAAAAGAACTATTCTCCTAATAATTTCTTATCT
CTATGCATGGAGCCCGGGGTAACTTGAACTAACTGGATAGATTAAATGGC
GCGATTAAGCGGTCCGAAAGTATAAGGTAGATATGGTTCCTTTATTATGC
AATCATGATAGTGTTACAACTTTATCAGTCAAAAAAATGATTTGACAAAT
CTTTCCTTTTTCAGCAAATGTAGTAAAGGATACACAGCGTTGCATTACGC
ATGTCGCGCTGCGTGTATTTCCAGTATAGTGTTCTTAGTGGAGATGGGTG
CGGACCTACGTGAAGCAAACAATCCAACCAACGAATCACCTCTTGATTCA
ATCCCGCCAAAAGAACAAGCAAGATTGGGTTCACTATTAAGAACAGCTAG
TAAGTGTGTTGTTACAAATGTATGATTTTTTTAGTAGCTACTAGTTTACA
ATTTAAAAGTAGAGCTCTCAAAATCGCCTACCAGGAAGCACTAGATTGAG
ATAAGCCGATAGATATTGTTCGGAAAACTTTACATACTCTGTCCTTAAAG
GGATAATCAGATGGTTTGAGATATTTGACCTGTAGTTAACTTCTACTGTC
CTGAGTAAAACCTCAAAATATTTTTGCCTAACTATCTTCCTAAATCGAGA
TATATTAGTTAAAAGTTTTTTTGCTTTTAGTGAGAATTACAACGAAAGAA
CCGTGTAAGAACCCATTTTCAGTAATTTCAAATCGACTCGACTTTGGAAG
ATAGTTAGACCAAAATACTTGGAGGTTTTATTCAAGACCGTAGAAGGTTA
CTACAGGCCAAATATCTTAAACCATCTGATTATCCCTTTAAAACTAATAT
TTTATTTATTTATTTTTGTAGCTGAAAATCGTGAAAAGCATGTGAGCGAA
TCGGTAAGTCTCGTCTCCAATTAAAAGTTCTTTTTTGTAGTTCTAAGCAA
GCAAGAGTGGACAATTAAAAACGTAGAAATAGCTATATGGTTTTACACAA
TTTCTATCATATATTCGTCAATATTTTAAAAGTTGTCTTCCATTAAAAAC
TAAAAAGACACCACTCAGAGTTCCGTGCTTACGCACTAATCATATTTACA
GTAATAATAGTATATGATATTCGTGAAATAAATAAAATCAAAAAGTGCTA
AAAAAAAATTCGAAATGTTCGAATGAAATATTAAGAAATAAAAAACTAAC
TTACAATTCCTACACGGTGTTTCATGCTGGCGTAATCTTCGAAAGAAATG
CAATAAAATCTACAATTTCACAAGATTACGATGATTTTCAACCATTGACT
TCCAAGCCCAAAAGGGCTAGACTCGAGACTCCTGGATGGGAAATGAAGCC
ACTTATTTTCCATCCAGAACGCCAGCGCGTGTTTTTTTTACAAGCGTTGG
ATTAAAAGTAAAATCTATCGCTAGATTTCAAAAAATACAGTTCTCAAAAA
CAAAGGAACCGCTACATACAATCCGTTGTCATGACTGTGGCGCGTTCTAG
TCGCATTCTGGATGGGAAATAAGTGGCTTCACTTTTTCTTGCCTGGGAAA
GGTTAGAGATTCTACTCTAGCTATTCGGGTTTTAAACTCAATGGTTTAAA
CATCCTAAGATTGTGCTCATCATAAAGATAACTCATGAAATGAGTTAAGA
GTATAATGGTTCGATTTTGAAAATCAGTGTTCTTCATTTCAGAAACGAAT
ATCGAACAGTGCATTTCTCAAAGAGTTCGTCATATGCGACGAAATTCCAT
ATCTGTGCAACGATCAGATCGAAGTGGACCAATCAATAGAACTGGCACGT
GGAGCACATTTGAATTTTTGTCATGGAACATTCAATGGTATGAACGTGAT
GGTCAAGTATCAAGATAAAGAAAAAGATGCCCTTGTGTTGAGGGATGAGG
TCATCGCTTTAAGGTAGGTTGGAAACCCTGACACTCTGAACCAGAATGAG
TGAACAGATCCAATATCTATGGAAATTCATTGCTGTTCATAATTTAAACC
ATTTTACATGACAAAAATAATCCTGATTTCAAAGTCAAAGCTAGAGGGAA
TTTTCGTAGGTAGAAGGGCATGAAGGTTATTTCAAGAGGCAAATTCAACA
GTAATTGACCAGTTTGTTTACTTTTTCGAGTGAAAGATTAACACAAGTTA
CACTCAGGTACATAGTACGGTTGACTGGCTTTGTTATGAGGTTTTGAACA
ATAGTAACAGTGGTCTCATTTTTACTGCAGGTCCCATTCATACTGAATTT
GAAAATCAATTTTAACAGGCTATCCGAAGCTCGATTATTTCTCGTTTTTA
GGAAACTCGGTAGCCATGTGAATTTTGTACAAATCCTTGGTGTGACATGT
GTAGACGAGGAATTCAATATCATCTTCGAAGCACCAGGATATGCTTTTCT
TCACCGAGTCTTATTCCAAACGAAAGTACCAATCAAAAAGGTGGAAGTAC
TGACTATTTGCAGAGATATTTCAAATGCTTTGAGATACATCCACGGTAAA
GGGTATTTGCACTGTGCGGTGGCAAGCTTCAGTGTGGTTCTGGGAAGAGA
TTTGGATGCTAAGGTAACAAATATATTCAAATATAACTTGAGTAAGATAA
ATCGTTGATATGCTTGCGGTTGAATTCACCTCAAATAAATGTGGTACATA
TATTCATATAATACTAAATACCCCGCCAACCACCAACTGACTTTTTGTGA
GACNATACTAAATACCCCGCCAACCACCGACTGACTTTTTGTGAGACTTA
TCGCAATCGAAACCTTTTTAACAACAACAATATGTAAGAAAACAAACTTG
TAAAAACCTATCCAACCTTCAGTGTACCTTGTATTATTTCCGTCCATTAA
CTCCCCTATAAAAGTCTCATCGAATTCGTTTTCTTCTAGCTTTGCAATTT
CAACTATGTCCAAGAGAAAGACAGAGCAAAGTCAGTCAGTCAACATTCAG
AATTATATCCATACATGAGTGTAGAGCAAAGACAAGGTCATCGATGTAGT
ATCGCTAATGATGTATTCGGCATGGGTATAATAATGGCAGAAATGATAAC
ACAAGAGAGAGCTCATGAAATATTAAGCAAGTCCAAGGGCAAAACATTGA
GAGATGTTTATATGCAAATCTTGAGACACATTGAGCGTTCAGGAGGCAGT
AGTGCCACATTGAAGAATTTAGTGAGTTATTGTATACATTGGGTACCTAA
AGAACGACCAACGGCTGAAATGGTAAGTTTGACATAAACAAAGAAACATC
TCCAAGGAAATATGATCGTTACATTCTGATATAGAATCACGGATAAAACT
TGAATAATAAATAGCCAAATAAATTATATTGGAAGAAGCGTAGAGTGAGA
AAGATTCTCAAAAGAGACACTCAAAAGAGGCAATTAGTGCAATAGGTACT
CTTGATCTGAATTATACTACACTCCACCTTTTTGGTAAATTGATGAAAGT
TACTGTATTTTTCGCAGGTATACGAGTGGACAGATGCCCTTTTACAAGAT
GGACAGGAAGTGGACCTAAAGCTTGGTCGAAGAAGACAATTGGTGGAGTT
ACAACTCGACTAAGGAGAAATACTCTTATTCCTAATTGAGCTTGTATGAT
ACTGTATATGTTTATGTATCATGCATTTACTAATAGTTTAAATAATACAT
TTAAAAATAAAGAAAAATGAAATAAAATTGTGCTCATACTTTTTGTTTTT
ACCTGTTTCTACATCAAGAATGTGCAAAAAAAAGTGTGCTAGAACAAAAT
TCTAAAATCCCTTAAAAGGAATTCAGAGTGTTAAGTTGTCTCTTCAAACA
AAAGACTTCAAACTCTTATGATGTCTGATCCAATTCAATATATATAGACA
ATGCTACCTTTCTGTATCTGCTTATATGATAATATTCAGTTTTTCAGTGA
ATCGATCTACCAAACACAAACAAAGCAAAACTTCGTACGCCTCAGGACTT
TTTTTCAATCAATCAATGGCTTTCAGTGATCTATACATAACATTCAATGG
TTCAATTACTCAAGTTGATAAAACTTTTTCAGCCCTTATTATATTTCACA
ATTTGTTTCTTCCCGAAAAAATCTTTCGTCAAACCTTACTCGTCGTTATT
TCTCTTCTACTCTTCTCTTAATATGTAGGCGCCCACGGTTCCAGATCATT
GAAACTAACCGGGCGTTTGACACCAGAAGGCGTGGTCATTCTCATATTGA
GATTGTCGTCCGCTCCCGTATCCAAGAAAAACACTTCCACGTAATAAGCA
GTGTCTTTCTCCATTGCGATCGGCCAACTTTCTGAATTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057980-exon-scaffold_302-1575043694:306117..306528 | TCONS_00057980-exon-scaffold_302-1575043694:306117..306528 | Clytia hemisphaerica | exon |
| TCONS_00057980-exon-scaffold_302-1575043694:305180..305364 | TCONS_00057980-exon-scaffold_302-1575043694:305180..305364 | Clytia hemisphaerica | exon |
| TCONS_00057980-exon-scaffold_302-1575043694:303016..304707 | TCONS_00057980-exon-scaffold_302-1575043694:303016..304707 | Clytia hemisphaerica | exon |
| TCONS_00057980-exon-scaffold_302-1575043694:302357..302689 | TCONS_00057980-exon-scaffold_302-1575043694:302357..302689 | Clytia hemisphaerica | exon |
| TCONS_00057980-exon-scaffold_302-1575043694:301289..302111 | TCONS_00057980-exon-scaffold_302-1575043694:301289..302111 | Clytia hemisphaerica | exon |
| TCONS_00057980-exon-scaffold_302-1510915933:306117..306528 | TCONS_00057980-exon-scaffold_302-1510915933:306117..306528 | Clytia hemisphaerica | exon |
| TCONS_00057980-exon-scaffold_302-1510915933:305180..305364 | TCONS_00057980-exon-scaffold_302-1510915933:305180..305364 | Clytia hemisphaerica | exon |
| TCONS_00057980-exon-scaffold_302-1510915933:303016..304707 | TCONS_00057980-exon-scaffold_302-1510915933:303016..304707 | Clytia hemisphaerica | exon |
| TCONS_00057980-exon-scaffold_302-1510915933:302357..302689 | TCONS_00057980-exon-scaffold_302-1510915933:302357..302689 | Clytia hemisphaerica | exon |
| TCONS_00057980-exon-scaffold_302-1510915933:301289..302111 | TCONS_00057980-exon-scaffold_302-1510915933:301289..302111 | Clytia hemisphaerica | exon |
| TCONS_00057980-exon-scaffold_302-1491911889:306117..306528 | TCONS_00057980-exon-scaffold_302-1491911889:306117..306528 | Clytia hemisphaerica | exon |
| TCONS_00057980-exon-scaffold_302-1491911889:305180..305364 | TCONS_00057980-exon-scaffold_302-1491911889:305180..305364 | Clytia hemisphaerica | exon |
| TCONS_00057980-exon-scaffold_302-1491911889:303016..304707 | TCONS_00057980-exon-scaffold_302-1491911889:303016..304707 | Clytia hemisphaerica | exon |
| TCONS_00057980-exon-scaffold_302-1491911889:302357..302689 | TCONS_00057980-exon-scaffold_302-1491911889:302357..302689 | Clytia hemisphaerica | exon |
| TCONS_00057980-exon-scaffold_302-1491911889:301289..302111 | TCONS_00057980-exon-scaffold_302-1491911889:301289..302111 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_302 | supercontig | scaffold_302:301289..306528 - |
Blast
The following BLAST results are available for this feature:
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