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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057944 ID=TCONS_00057944|Name=TCONS_00057944|organism=Clytia hemisphaerica|type=transcript|length=1264bp
aaGCTTTCTTACGTGTAAGAGGCATCACTCGTCTTTTGATTCAAGTCCAA
AGTAAACTAACATGAATTCATTGTGCACCATCATCCTATTTGTGTGCGTG
ATCAACGCAGTATTTGGTCGTTATTACTATGACAACGATAGAGCACCATG
GAAACAATACAACGAGAAAAGAGATGACAGACAACCGTCGTTTCTAACGA
GAGATTCCTTTAGACAAGACAATGAGAATTTTCCAAGATTGCAAGATTCA
AGATTCGCAAGATTTCATGATTTCCAAAAAGAAGAGCCAAACCCGAACCG
CCCACTTCCGATCCCTTTGAAAGACGCAGTCCGGTATGTCCGACAATACG
GGCCACATGCGGACATGTTGCGGGCAAAGGAAGAAAAAGTGATGAGCTAC
AAATTCTCAGATGCAGTGAATCACTTTAGGAATAAGAACAAACGATCTGA
AGAACCAAAGTGTCAACGTCGAACGGGTGACCCAAcaTGCAAGCGAGACG
TGAATGGTTGTGGATCTGGTTTCACTGCTTCTCTACCGCTTTTTTATCGT
GAAGAATTTACACCATGCTGCAATAAACACGACGTTTGTTACGATTGTgg
CGTCACACGTCATTGGACGAGAGAACAATGCGACAATAAATTTTATGATG
ATATGGAAAACACATGTAGCTGTTTATACCCTAGTTGGTATCAATACCCT
GCCTACAAAACATGCAAATTGTGGGCTTCTACCTTATACGCTGTTGTTGA
TGTCTTCAGTGCAAGCTATTTTGGAACAAAGGTTAAAGATGTTTGTAAAT
CAAAATGCATTTTACCATACGGTAGTCCCCAGATCTCGTTATTAGGCTAA
TAGAATATTTTCATGATCCAATCCGTTGACTCTGGTCATTTTCCTGGTCA
GAACTTACATTCAACTAGCGGACACTCCATTTATCGGacatattttttta
atgaaatagtGAAGTTCCATTTTATCCTAGGGATAAATTTAGTCTGAACC
gcaaacctctatagatatacttcctatataagaaactttttcgctagagg
atgagcagaagcctagggAAAATTGGTCTTTATAGtccaaattttttcaa
catttgcCTTGACCGCAAATCTTTCAATGTAGgataatttttgtataaaa
attttgtttcaatatcattttcaactactttttttgcttttatgtCCTTA
GCTTGTTTAGCTGAAACGAATATTTGAATTTTGGCACACAGGCTTTTACT
AAAATCTATCTCAT Run BLAST on NCBI transcript from alignment at scaffold_302:390415..397377+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057944 ID=TCONS_00057944|Name=TCONS_00057944|organism=Clytia hemisphaerica|type=transcript|length=6963bp|location=Sequence derived from alignment at scaffold_302:390415..397377+ (Clytia hemisphaerica)
aaGCTTTCTTACGTGTAAGAGGCATCACTCGTCTTTTGATTCAAGTCCAA
AGTAAACTAACATGGTAGGTGTACTAATAACTTTGTGTAGGGATTTTCAT
TATAAATCGGCGGTTATGGTTTTTATAGCCTACCATTTTTGCATTGCATA
ACTTTATACTCGTTCTTTTTAGAATTCATTGTGCACCATCATCCTATTTG
TGTGCGTGATCAACGCAGTATTTGGTCGTTATTACTATGACAACGATAGA
GCACCATGGAAACAATACAACGAGAAAAGAGATGACAGACAACCGTCGTT
TCTAACGAGAGATTCCTTTAGACAAGACAATGAGAATTTTCCAAGATTGC
AAGATTCAAGATTCGCAAGATTTCATGATTTCCAAAAAGAAGAGCCAAAC
CCGAACCGCCCACTTCCGATCCCTTTGAAAGACGCAGTCCGGTATGTCCG
ACAATACGGGCCACATGCGGACATGTTGCGGGCAAAGGAAGAAAAAGTGA
TGAGCTACAAATTCTCAGATGCAGTGAATCACTTTAGGAATAAGAACAAA
CGATCTGAAGAACCAAAGTGTCAACGTCGAACGGGTGACCCAAGTGAGTG
gaataaaatacaaatcaaACTGGTCCCCAGTTTTTTATTATTCACATCTG
AAATTAGTAAATCCAAGTCTATCAGAATTCTAATGTAATTATAGAACCAC
AATGTAAAATCTATTGTAAATTACGGGATAGTTGTCCGGGACAATTCATC
CAGCAGGATCAACAATGTCCATAAGCTAACATTCATGGAAAACAATGTGT
AATGTATATTTCATGTATTTGGCTATCCTTCGTCTTTTAGAATGCAAACG
AGACGTGAATGGTTGTGGATCTGGTTTCACTGAAGGAATCCCTTTCTTTT
TTCGTGAAGCTTTTACACCATGCTGCAACAAGCACGACGTCTGCTATGAT
TGTGTAAGTTCAAAAccctcccgccgatttttttccgtaccGCCATAAca
ccataccgccatattttcctgTAACGGACAATAACATTGTCTACCGTATG
TCAAAAGGTTGAAGATTAAGAAATATATTAACCTATGACGATTAAAATTA
ATTTAGGGCCCTGGGGACCATGTTTTAGAGTGTATTATATGTGGCGAAAG
CTTTGAATGCGGAAAAACAAAACATGGCGGGTgccaaaacttgatttaag
tCCTTAATGGCCCTTAATGCTATCTTTTATTTCTGGTATTTTTCTTGCAG
GGTGTGACAGATTCTTGGACGCGAAAAGAATGCGATACAGCTTTTTACAA
CGATATGGTGGATGTTTGTGAGTGCGAATATCCTAACTGGTCGCAATATG
CACAATATCTGGCATGTCAGTTACGAGCATCTGAGTTATGGGCAGCTGTT
AATGTCTTCGCTGGATCATTTTTCGGTACCAAAGAGAAGGCAGTGTGCAA
ACAACAATGTATCTTGCCCTATGGTAGTCCCAAAATAAGCTTGTTGGAAT
AGTTCTGTCTTGCAATGAGCTTTAAAGATTTCTGCTCCTGGGTTGTGACA
AGCTAATCGAAACGGATATAACTTTCTAGTCATTTTTTTATGAGTTTATA
Ctatttttttaaccctttgagtgccagggtccttttttctaagttttttt
taaaaaatcgctagttcaaactttaagggcttatatctcctgatctagaa
ggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNaaaaataacgatttctaactcaaa
ctgggcattacaggagggcttcgccctcctatatagcccatgtcgtatat
atacgacatcggcacttaaagggttaacattTTGGTAATAATCTTAGCCT
GTAATTTTACTAGTACTAAAGAAAAGGAATACATTATAGTGGCAACCCAA
ATGCTGTAAATCTTTTTACTCAAGCCTTAATTGACGGCTTTAAATATGGC
TATCAAacaaacccttggaaaaattgaaaacttcttACAATACCGGCCAT
AATAGTTAAGAACAAAGAGACATTATAGCCACAATATTTTAAGCGCTCCA
ACTTAGTttcaactctgagttttaacatgagacttaaacttaggatttga
ggatccaaaagttcaaaaaagatCCAAAAGGGATCAGAATATGGCCTGGA
AGTCTTTAAACCCtacccaaattgaaatatccgattaaatctAACAAATA
GCCCAAAAGCCACTTTCTCACccaaaaacgaggaattaaccaaaattctc
aatagacTTTGACCGATATTGTGGTCTTAGCTTTCTGCTCAAAATTTAGT
TATTCTGAGCAATGACAAGTAGTTGAGAAATGGCAATTCTCTGGGTTTCA
AACTACCTATCCGCATTCTCAAAAAGGGCTAAGGATGGAAACTTATAAAA
CCATAGTAGCAGTTTTTCATGACATTTGGAGTTTAGATTTTCAACAAGGT
AAAAAAGCTGCCTCGCGCCCGCGATAAGGTGAACAGTTAATTCTATGTGA
CAGCTCAATCCTTTTTCATTGACAAAAGATTGGTAGGATTCGTTTTCATA
TTTCCCTCTTTATTCAGAATTCGCATTAACCAATTATAATCGTCGCATCC
TTAGCTTTATTGAATAAGCTAAATACTCATTAAGACTATACAAATACCTT
TGCATCAAAGTTAAAATCAGATAAAAGTCTTTATCTCTAGATAAGTAAAA
TGAATAATAGCCTTTTAATCAACTAATTATGGAACGTCTACCGATATATC
GGTGGTATTAATGTATGATTTATGCAGTTGGAACATCGACCAAGGTATCA
CAGGAGGTTAAAACAAGAGCTAGAAGTGATGgtatgaaattttctttaaa
tgtcTTCTACCAACAAAGGACATAGCAAATAACTCAATATTTGGACAATC
TAAGTAATTTTTAGGGTATCTTAATTAGAGCGGGGAAAATTATCTTTTTG
ATTCAGTATTTGGATCAAAAAGCCATCTAATCTATTGACATTTAAGACAA
AGTATCTATACACGATTCTAGTGctattaatttttctaaaaatgtaccTA
AACGGTTTCTCTCTATAACCTATTAATATTTTTCGATACATTCTATTTTT
ATTCGGCAATTTAAACTTTAGAACTCCTTGAAAACGATCCTACTTTTGTG
TGTCGTCAATGCAGCATTTGGCCGTTATTACCATGACAACGTAAGATCAC
CACAAAGACAATATTATGAGCAGAGGGATAAGGACAAAAACCCTTTTGAA
AGGTAAGATATTATTCAATAGGCTGTTTGCAAACTTGTAAATGAGAAATT
CTTGTTACAAATTATCGAACATTGGCttcaacttttcctaattataCCAA
AGTACCTTCCTAACAACTTTTCACCGCAGCTTTCATAGTGAAGTTGTCTT
TGCTACAAATCTACAGTATGAAAACATCTAGAATATCTTTAAGTCGAATC
ATTTGATTTAACCAAAGCAATTGCAGAATCAACCTTAATAAACTTCTCAA
ATCTATTTCTCAACTTCAGCAACATCCCTTTACCCTCTGACTttgatgat
gacgtcacagaCCAGCTAAAACATGACGATCCACACCATTACCGACCTTT
ACCACTCCCGATGAAAGATGCTATCCGATACGTGAGAAAATACGGACGGC
ACGCTGAATCGTTACGGAAGTTTGAAGACGAGTTGAGACGTTTACCTCGG
TCACATGTCATGTTAGACCAACTCCGAAACGAGAAAAGATCACCGTTTAA
ATGTCAAACTCGACCAAAAGATAAAGGTAGCATACGAGAATATTCAGGAA
GAAAGATACAAGAGTGTACATGGAAAAGAaaatatacacattttttataa
gcaaccaagtTGCTAAGGGTCCAGTTCTGGCCAAAAACAGCCAAATAATT
AAGCAACTCAGCCTTAGCAACCTAGTCCTGAAACTGAGCATGAACCGGGA
AAGCaactaaaaatctaaaaaagagGCATTTTTGGCATAATTTGGCATTA
AAATGGGTAGCGATCTTATTTGAATACCAAATTTGGGGTATTTTGAAcat
aaaatgagataaaaagtcaaaacttttgaagttgCTAaacatttttggct
caaaatcaATAAGCaactttttggctgaaatccAGAATATCCGTAGCAAC
TCCAACCCTGAGCCAAAAATTGGGTTACTCATAAAACAATGTGTACAAGG
TTATATTGGGGAAAGATAGAGGTGTAAAGGCTAATACAGGTGTACATGGT
AATATGTAATAGTGTGCATTTGAAAGATACAAGTATACACAAAGAAAATA
ACAGGGCAGGAGGGAAATATACAAGGGGTGTACATGGAAAATATAGCGAA
GATATTCAAGAAAAAGATGCACGGCCGTTTAGGGGTGTACATAGAAACAC
ACGGGAAAGATATAGGGGTGTGCATGGGAAATATACAGGGGCGTTCATGG
AAAAGCTGCGAGGTAAAATTTAACACGTCAAGGTACCATTTTTGATACTC
CTAGAAAGACCTTAATTCACGTGTTGCGTTATTGAAAAGGTGTAGAAATA
TCTTCCTATGGTTGTTTTGTAGTCCCACTTAGAGTTAGAGAAAGCGGTGA
AATTCATTTAGCTACTGTATTGTTTGTTATCAGgggaaatatttcttttc
ttttagcaTGCAAGCGAGACGTGAATGGTTGTGGATCTGGTTTCACTGCT
TCTCTACCGCTTTTTTATCGTGAAGAATTTACACCATGCTGCAATAAACA
CGACGTTTGTTACGATTGTGTAAGTGTGCTTAGAAACTTCGAAGAAGTAC
AATAATgacacctctgtctcacagccctggtaGGGCTTTTTCCtagaatg
gggataaaaatttcgattgaaattccaatagggatagaaattatattgtt
tccAAGATTAAgatatccagtggggatggttttggagtgcaatttttggc
attgaatttcaaatggggataaaaacaaagtcaatttccaagtgGTACCG
AAATTGTAGAGTTATTTTGTCCGctggggacaaaattttggccaaatttt
ccagtggggctgttAGTATggcaataatttttaaaatttttgtatttatc
GAGGTCTGTTTACAGACAACAACAATAATAAATAAGTTAAAGCCCTTAAA
ACCTATTTTGACCGTGATTGGACCGTACGGGTAAATTGTTTTTAGAAGTA
TCGACTAAATAATTTTTAAGGATATCTACTTCTAGTGTGTTGCTAGGTAG
CATTGCAACCACGACATACCTTCTGCTTTCCGTTGAAACCATGAATGAGT
TATTCATACTAGTAACATAAGATCaatgtcaattttatttttcttagggC
GTCACACGTCATTGGACGAGAGAACAATGCGACAATAAATTTTATGATGA
TATGGAAAACACATGTAGCTGTTTATACCCTAGTTGGTATCAATACCCTG
CCTACAAAACATGCAAATTGTGGGCTTCTACCTTATACGCTGTTGTTGAT
GTCTTCAGTGCAAGCTATTTTGGAACAAAGGTTAAAGATGTTTGTAAATC
AAAATGCATTTTACCATACGGTAGTCCCCAGATCTCGTTATTAGGCTAAT
AGAATATTTTCATGATCCAATCCGTTGACTCTGGTCATTTTCCTGGTCAG
AACTTACATTCAACTAGCGGACACTCCATTTATCGGacatatttttttaa
tgaaatagtGAAGTTCCATTTTATCCTAGGGATAAATTTAGTCTGAACCg
caaacctctatagatatacttcctatataagaaactttttcgctagagga
tgagcagaagcctagggAAAATTGGTCTTTATAGtccaaattttttcaac
atttgcCTTGACCGCAAATCTTTCAATGTAGgataatttttgtataaaaa
ttttgtttcaatatcattttcaactactttttttgcttttatgtCCTTAG
CTTGTTTAGCTGAAACGAATATTTGAATTTTGGCACACAGGCTTTTACTA
AAATCTATCTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057944-exon-scaffold_302-1491911889:390415..390478 | TCONS_00057944-exon-scaffold_302-1491911889:390415..390478 | Clytia hemisphaerica | exon |
| TCONS_00057944-exon-scaffold_302-1510915933:390415..390478 | TCONS_00057944-exon-scaffold_302-1510915933:390415..390478 | Clytia hemisphaerica | exon |
| TCONS_00057944-exon-scaffold_302-1575043694:390415..390478 | TCONS_00057944-exon-scaffold_302-1575043694:390415..390478 | Clytia hemisphaerica | exon |
| TCONS_00057944-exon-scaffold_302-1491911889:390587..391007 | TCONS_00057944-exon-scaffold_302-1491911889:390587..391007 | Clytia hemisphaerica | exon |
| TCONS_00057944-exon-scaffold_302-1510915933:390587..391007 | TCONS_00057944-exon-scaffold_302-1510915933:390587..391007 | Clytia hemisphaerica | exon |
| TCONS_00057944-exon-scaffold_302-1575043694:390587..391007 | TCONS_00057944-exon-scaffold_302-1575043694:390587..391007 | Clytia hemisphaerica | exon |
| TCONS_00057944-exon-scaffold_302-1491911889:396021..396133 | TCONS_00057944-exon-scaffold_302-1491911889:396021..396133 | Clytia hemisphaerica | exon |
| TCONS_00057944-exon-scaffold_302-1510915933:396021..396133 | TCONS_00057944-exon-scaffold_302-1510915933:396021..396133 | Clytia hemisphaerica | exon |
| TCONS_00057944-exon-scaffold_302-1575043694:396021..396133 | TCONS_00057944-exon-scaffold_302-1575043694:396021..396133 | Clytia hemisphaerica | exon |
| TCONS_00057944-exon-scaffold_302-1491911889:396712..397377 | TCONS_00057944-exon-scaffold_302-1491911889:396712..397377 | Clytia hemisphaerica | exon |
| TCONS_00057944-exon-scaffold_302-1510915933:396712..397377 | TCONS_00057944-exon-scaffold_302-1510915933:396712..397377 | Clytia hemisphaerica | exon |
| TCONS_00057944-exon-scaffold_302-1575043694:396712..397377 | TCONS_00057944-exon-scaffold_302-1575043694:396712..397377 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_302 | supercontig | scaffold_302:390415..397377 + |
Blast
The following BLAST results are available for this feature:
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