|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057942 ID=TCONS_00057942|Name=TCONS_00057942|organism=Clytia hemisphaerica|type=transcript|length=694bp
TTTCAATGAGATTGGTAATATGATTGCGTACTATTATATTCTTCGCTTAT
TATTCGCTTTTTAATGATATTAGCGCAACTGTTACGTGTGTTTGTTGAAA
GGTATAAAAGGGAGTCGACGCTTACCTAGTCTAGTAGTACCATATTCTAA
CGAGGTGAATGCTGATAAACCACTGAGAATACCAGAAGCTGAAACTATGA
ATTCATTGTGCACCATCATCCTATTTGTGTGCGTGATCAACGCAGTATTT
GGTCGTTATTACTATGACAACGATAGAGCACCATGGAAACAATACAACGA
GAAAAGAGATGACAGACAACCGTCGTTTCTAACGAGAGATTCCTTTAGAC
AAGACAATGAGAATTTTCCAAGATTGCAAGATTCAAGATTCGCAAGATTT
CATGATTTCCAAAAAGAAGAGCCAAACCCGAACCGCCCACTTCCGATCCC
TTTGAAAGACGCAGTCCGGTATGTCCGACAATACGGGCCACATGCGGACA
TGTTGCGGGCAAAGGAAGAAAAAGTGATGAGCTACAAATTCTCAGATGCA
GTGAATCACTTTAGGAATAAGAACAAACGATCTGAAGAACCAAAGTGTCA
ACGTCGAACGGGTGACCCAAcaTGCAAGCGAGACGTGAATGGTTGTGGAT
CTGGTTTCACTGCTTCTCTACCGCTTTTTTATCGTGAAGAATTT Run BLAST on NCBI transcript from alignment at scaffold_302:387221..396094+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057942 ID=TCONS_00057942|Name=TCONS_00057942|organism=Clytia hemisphaerica|type=transcript|length=8874bp|location=Sequence derived from alignment at scaffold_302:387221..396094+ (Clytia hemisphaerica)
TTTCAATGAGATTGGTAATATGATTGCGTACTATTATATTCTTCGCTTAT
TATTCGCTTTTTAATGATATTAGCGCAACTGTTACGTGTGTTTGTTGAAA
GGTATAAAAGGGAGTCGACGCTTACCTAGTCTAGTAGTACCATATTCTAA
CGAGGTGAATGCTGATAAACCACTGAGAATACCAGAAGCTGAAACTATGG
TAAGAATAGGTTATCTCTTATTGTCTTGTATACTTAGCTCAAAAAAGGtc
ctaaatttgaaaaaagatattgttGCTGAAATTCGACACAAGGAGGCTCC
TCCTAGAACCtcccgaaaaaaaaaactgGAATTAAATCAAAAGTGTTGGA
TCACTTTTTTTTAGGCGGGGGTTATGATGTCCACTGTCCACTATAAAttc
ttgcaaaaaaatttttttaaacgttttcaaaaatcaatttatcaTATTCA
TATCATATAACCACATTATTACATACATTTAGATATACTTTAGGCATACA
AACTATcagcccttttcgcgaaagtaattttctttgataattctttgaaa
gGGCCATTTGCAAATCTGTAAAGATTTTAACTTAggataaaatgtaaaat
ttatggCACTGTATAGCCTGTTAAAAGTTTCATAAATTCAAAAGACAAAA
GTTCGAAAGTTTCAAcctaattatttattttttaccctaagtatttgtcc
ctctaagtcATTTGTTCATaagaaaatattcatttttatgtcttgattcg
cgatagtttctgcttgcgaaagtttgtGCGCCTAAAATACAATGTGTCCC
AAAAAAGCAGAAAACTGACCGTATGAGTCCCTTATGAgtcctttttccaa
gcttcccaaagtgcagtGTAAAGGTCAAAATGAGTaaatatgaaaagaaa
aagtgcACTTTAAGGGTGTAGAATCCCACGATATTTTATCTTACCGACCT
TTTTACCTTTAGTGCCCCCCCGGGCTGGGTTTGTATCTGTTATAATGATT
AATTTTCTCTTATGATGGTTAAATTACCAAGTTCAATGTTTTGTTGGTCA
CGATCTTTTTAACATACCTTTCCTTTGACAGGGCTTAATAGCATAAAGAA
GGAATTGCTTAATCTCTAAATCAATTATGATACTGCATTCATCCCTTTTA
TCTTATTGCTATCAAATTGTATTTTAGACAGCGGCTCAATTCATTGTGCA
AATCGCATTATTTACCAAAACAAAATTCGTGCAACGTATCTAGACACGTC
AAACGTCAGACATGAAATCATAGAGGTCCATAAACACGAGAGATTTGCTT
TAAGATAAAGCCTACTATTGTCACTTCTCCACCGGAAAAACTGGGTCCCA
GACtatctttgaagtgaatttccTCGAGTTTTCTAAACTGTTAAAAGATT
CATTTGCATTGGAgtacaatatgaaatatattttccaagtTCAGAATTTT
CGTCATATGTTCCAACGCGTTTTTAGTCAATCAGATTGCTTACATTtttc
tagcctggatatcctgGATAGCCCCTTACGACTTCAGCGGAATGAgtgca
agcaagcggactgtaTTCTGATCTGAGAaggcaaatcgctctagggagac
caggctgtaaatcagaacatgaaatatcaaaaactagactgtgaaatagt
ttacagcctggatatccaggctaatattCTTCATGTTAATGATAAACATG
TTTACTGTTGAcgaatccaagatcttggattaagttcaaagttgatattt
tttacgCGTCATTGAAAGCACAACTCAGAAATGTTATCAacgctttttta
aaaagagtcagtaatagagaatcataacataaagatttGTCTATTATGTC
GGTTCCATTGAAGTAATATTACCATAATCCCATAATTAATATAATTATTg
ttgggaatcatgtagaagatttcttttgaaagaaactcatttcaattaca
atttctggggaattcgtcaaCAGTAAACATGTTTATCatcaataacatga
aaaatatTAGCCTGCATGTCCAGGATTGGattgttgaaacttttttttta
tctatagtataggtaacacgaacaaatagtacaaaacaaaagtttgaaag
ttgaaactttGCCACATGTTCAGAGAAGTGTAAAATATTTATAGGTAACA
GACCAAGGGAGGTAGAGAAATTCCAATTTTCTACATTTTCGACTTATTCT
CAAATTTGCCTTTaaacaatacacgtttttttttataaggaacacgttta
taaggaactcgaggctgaaaatggttcaaaaaataaggaattgtcaagga
actgctcaggctgagaataagtggatttgaaaataatgtaccttattggg
actaatttgaccaaattttgatctttcaaggggcaNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNagtaaggaactcgataaggaacttt
gagactgaaattctctgtaaaaataaggaactccaggctcagagcaaagt
taaggttccttataaaaaaaaaacgtgtacgccAACCCGGATCCAGTCGT
CCGGATCCAGCCTCACACCAAGCGTGAGTGTTCTGTAGTctcatttagaa
aaaaatgcagGAAAATCATGCAGcgagaaaaaaagtaaaaggaaGCGGTC
CTTACCCCGAATATAAAAACAGGAAATTCAGTAGCGCTCTCAAGGTTTCG
GAAAGTTTGTGTAGGAGAGCGCAATTTTGTTGCGAAGTTATTATCTTTTA
ATTTTATGAATAGATAGTCactttgtcataaaaatctgctcttcGACACA
AATTTTCCGACACCCCTGAGAACGCTCTTGTCGGAAACCGGTCCAATTTA
ATTTAGACGTCCCTAATGCAAATCTAATAATTAACATATCAattaattca
attttaattATGCTTCCGCTCTCTcaatcaaaatattataaaagaaGCTT
TCTTACGTGTAAGAGGCATCACTCGTCTTTTGATTCAAGTCCAAAGTAAA
CTAACATGGTAGGTGTACTAATAACTTTGTGTAGGGATTTTCATTATAAA
TCGGCGGTTATGGTTTTTATAGCCTACCATTTTTGCATTGCATAACTTTA
TACTCGTTCTTTTTAGAATTCATTGTGCACCATCATCCTATTTGTGTGCG
TGATCAACGCAGTATTTGGTCGTTATTACTATGACAACGATAGAGCACCA
TGGAAACAATACAACGAGAAAAGAGATGACAGACAACCGTCGTTTCTAAC
GAGAGATTCCTTTAGACAAGACAATGAGAATTTTCCAAGATTGCAAGATT
CAAGATTCGCAAGATTTCATGATTTCCAAAAAGAAGAGCCAAACCCGAAC
CGCCCACTTCCGATCCCTTTGAAAGACGCAGTCCGGTATGTCCGACAATA
CGGGCCACATGCGGACATGTTGCGGGCAAAGGAAGAAAAAGTGATGAGCT
ACAAATTCTCAGATGCAGTGAATCACTTTAGGAATAAGAACAAACGATCT
GAAGAACCAAAGTGTCAACGTCGAACGGGTGACCCAAGTGAGTGgaataa
aatacaaatcaaACTGGTCCCCAGTTTTTTATTATTCACATCTGAAATTA
GTAAATCCAAGTCTATCAGAATTCTAATGTAATTATAGAACCACAATGTA
AAATCTATTGTAAATTACGGGATAGTTGTCCGGGACAATTCATCCAGCAG
GATCAACAATGTCCATAAGCTAACATTCATGGAAAACAATGTGTAATGTA
TATTTCATGTATTTGGCTATCCTTCGTCTTTTAGAATGCAAACGAGACGT
GAATGGTTGTGGATCTGGTTTCACTGAAGGAATCCCTTTCTTTTTTCGTG
AAGCTTTTACACCATGCTGCAACAAGCACGACGTCTGCTATGATTGTGTA
AGTTCAAAAccctcccgccgatttttttccgtaccGCCATAAcaccatac
cgccatattttcctgTAACGGACAATAACATTGTCTACCGTATGTCAAAA
GGTTGAAGATTAAGAAATATATTAACCTATGACGATTAAAATTAATTTAG
GGCCCTGGGGACCATGTTTTAGAGTGTATTATATGTGGCGAAAGCTTTGA
ATGCGGAAAAACAAAACATGGCGGGTgccaaaacttgatttaagtCCTTA
ATGGCCCTTAATGCTATCTTTTATTTCTGGTATTTTTCTTGCAGGGTGTG
ACAGATTCTTGGACGCGAAAAGAATGCGATACAGCTTTTTACAACGATAT
GGTGGATGTTTGTGAGTGCGAATATCCTAACTGGTCGCAATATGCACAAT
ATCTGGCATGTCAGTTACGAGCATCTGAGTTATGGGCAGCTGTTAATGTC
TTCGCTGGATCATTTTTCGGTACCAAAGAGAAGGCAGTGTGCAAACAACA
ATGTATCTTGCCCTATGGTAGTCCCAAAATAAGCTTGTTGGAATAGTTCT
GTCTTGCAATGAGCTTTAAAGATTTCTGCTCCTGGGTTGTGACAAGCTAA
TCGAAACGGATATAACTTTCTAGTCATTTTTTTATGAGTTTATACtattt
ttttaaccctttgagtgccagggtccttttttctaagttttttttaaaaa
atcgctagttcaaactttaagggcttatatctcctgatctagaaggNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNaaaaataacgatttctaactcaaactgggc
attacaggagggcttcgccctcctatatagcccatgtcgtatatatacga
catcggcacttaaagggttaacattTTGGTAATAATCTTAGCCTGTAATT
TTACTAGTACTAAAGAAAAGGAATACATTATAGTGGCAACCCAAATGCTG
TAAATCTTTTTACTCAAGCCTTAATTGACGGCTTTAAATATGGCTATCAA
acaaacccttggaaaaattgaaaacttcttACAATACCGGCCATAATAGT
TAAGAACAAAGAGACATTATAGCCACAATATTTTAAGCGCTCCAACTTAG
Tttcaactctgagttttaacatgagacttaaacttaggatttgaggatcc
aaaagttcaaaaaagatCCAAAAGGGATCAGAATATGGCCTGGAAGTCTT
TAAACCCtacccaaattgaaatatccgattaaatctAACAAATAGCCCAA
AAGCCACTTTCTCACccaaaaacgaggaattaaccaaaattctcaataga
cTTTGACCGATATTGTGGTCTTAGCTTTCTGCTCAAAATTTAGTTATTCT
GAGCAATGACAAGTAGTTGAGAAATGGCAATTCTCTGGGTTTCAAACTAC
CTATCCGCATTCTCAAAAAGGGCTAAGGATGGAAACTTATAAAACCATAG
TAGCAGTTTTTCATGACATTTGGAGTTTAGATTTTCAACAAGGTAAAAAA
GCTGCCTCGCGCCCGCGATAAGGTGAACAGTTAATTCTATGTGACAGCTC
AATCCTTTTTCATTGACAAAAGATTGGTAGGATTCGTTTTCATATTTCCC
TCTTTATTCAGAATTCGCATTAACCAATTATAATCGTCGCATCCTTAGCT
TTATTGAATAAGCTAAATACTCATTAAGACTATACAAATACCTTTGCATC
AAAGTTAAAATCAGATAAAAGTCTTTATCTCTAGATAAGTAAAATGAATA
ATAGCCTTTTAATCAACTAATTATGGAACGTCTACCGATATATCGGTGGT
ATTAATGTATGATTTATGCAGTTGGAACATCGACCAAGGTATCACAGGAG
GTTAAAACAAGAGCTAGAAGTGATGgtatgaaattttctttaaatgtcTT
CTACCAACAAAGGACATAGCAAATAACTCAATATTTGGACAATCTAAGTA
ATTTTTAGGGTATCTTAATTAGAGCGGGGAAAATTATCTTTTTGATTCAG
TATTTGGATCAAAAAGCCATCTAATCTATTGACATTTAAGACAAAGTATC
TATACACGATTCTAGTGctattaatttttctaaaaatgtaccTAAACGGT
TTCTCTCTATAACCTATTAATATTTTTCGATACATTCTATTTTTATTCGG
CAATTTAAACTTTAGAACTCCTTGAAAACGATCCTACTTTTGTGTGTCGT
CAATGCAGCATTTGGCCGTTATTACCATGACAACGTAAGATCACCACAAA
GACAATATTATGAGCAGAGGGATAAGGACAAAAACCCTTTTGAAAGGTAA
GATATTATTCAATAGGCTGTTTGCAAACTTGTAAATGAGAAATTCTTGTT
ACAAATTATCGAACATTGGCttcaacttttcctaattataCCAAAGTACC
TTCCTAACAACTTTTCACCGCAGCTTTCATAGTGAAGTTGTCTTTGCTAC
AAATCTACAGTATGAAAACATCTAGAATATCTTTAAGTCGAATCATTTGA
TTTAACCAAAGCAATTGCAGAATCAACCTTAATAAACTTCTCAAATCTAT
TTCTCAACTTCAGCAACATCCCTTTACCCTCTGACTttgatgatgacgtc
acagaCCAGCTAAAACATGACGATCCACACCATTACCGACCTTTACCACT
CCCGATGAAAGATGCTATCCGATACGTGAGAAAATACGGACGGCACGCTG
AATCGTTACGGAAGTTTGAAGACGAGTTGAGACGTTTACCTCGGTCACAT
GTCATGTTAGACCAACTCCGAAACGAGAAAAGATCACCGTTTAAATGTCA
AACTCGACCAAAAGATAAAGGTAGCATACGAGAATATTCAGGAAGAAAGA
TACAAGAGTGTACATGGAAAAGAaaatatacacattttttataagcaacc
aagtTGCTAAGGGTCCAGTTCTGGCCAAAAACAGCCAAATAATTAAGCAA
CTCAGCCTTAGCAACCTAGTCCTGAAACTGAGCATGAACCGGGAAAGCaa
ctaaaaatctaaaaaagagGCATTTTTGGCATAATTTGGCATTAAAATGG
GTAGCGATCTTATTTGAATACCAAATTTGGGGTATTTTGAAcataaaatg
agataaaaagtcaaaacttttgaagttgCTAaacatttttggctcaaaat
caATAAGCaactttttggctgaaatccAGAATATCCGTAGCAACTCCAAC
CCTGAGCCAAAAATTGGGTTACTCATAAAACAATGTGTACAAGGTTATAT
TGGGGAAAGATAGAGGTGTAAAGGCTAATACAGGTGTACATGGTAATATG
TAATAGTGTGCATTTGAAAGATACAAGTATACACAAAGAAAATAACAGGG
CAGGAGGGAAATATACAAGGGGTGTACATGGAAAATATAGCGAAGATATT
CAAGAAAAAGATGCACGGCCGTTTAGGGGTGTACATAGAAACACACGGGA
AAGATATAGGGGTGTGCATGGGAAATATACAGGGGCGTTCATGGAAAAGC
TGCGAGGTAAAATTTAACACGTCAAGGTACCATTTTTGATACTCCTAGAA
AGACCTTAATTCACGTGTTGCGTTATTGAAAAGGTGTAGAAATATCTTCC
TATGGTTGTTTTGTAGTCCCACTTAGAGTTAGAGAAAGCGGTGAAATTCA
TTTAGCTACTGTATTGTTTGTTATCAGgggaaatatttcttttcttttag
caTGCAAGCGAGACGTGAATGGTTGTGGATCTGGTTTCACTGCTTCTCTA
CCGCTTTTTTATCGTGAAGAATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057942-exon-scaffold_302-1491911889:387221..387419 | TCONS_00057942-exon-scaffold_302-1491911889:387221..387419 | Clytia hemisphaerica | exon |
| TCONS_00057942-exon-scaffold_302-1510915933:387221..387419 | TCONS_00057942-exon-scaffold_302-1510915933:387221..387419 | Clytia hemisphaerica | exon |
| TCONS_00057942-exon-scaffold_302-1575043694:387221..387419 | TCONS_00057942-exon-scaffold_302-1575043694:387221..387419 | Clytia hemisphaerica | exon |
| TCONS_00057942-exon-scaffold_302-1491911889:390587..391007 | TCONS_00057942-exon-scaffold_302-1491911889:390587..391007 | Clytia hemisphaerica | exon |
| TCONS_00057942-exon-scaffold_302-1510915933:390587..391007 | TCONS_00057942-exon-scaffold_302-1510915933:390587..391007 | Clytia hemisphaerica | exon |
| TCONS_00057942-exon-scaffold_302-1575043694:390587..391007 | TCONS_00057942-exon-scaffold_302-1575043694:390587..391007 | Clytia hemisphaerica | exon |
| TCONS_00057942-exon-scaffold_302-1491911889:396021..396094 | TCONS_00057942-exon-scaffold_302-1491911889:396021..396094 | Clytia hemisphaerica | exon |
| TCONS_00057942-exon-scaffold_302-1510915933:396021..396094 | TCONS_00057942-exon-scaffold_302-1510915933:396021..396094 | Clytia hemisphaerica | exon |
| TCONS_00057942-exon-scaffold_302-1575043694:396021..396094 | TCONS_00057942-exon-scaffold_302-1575043694:396021..396094 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_302 | supercontig | scaffold_302:387221..396094 + |
Blast
The following BLAST results are available for this feature:
|
