TCONS_00057875 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057875
Unique NameTCONS_00057875
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length235

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057875 ID=TCONS_00057875|Name=TCONS_00057875|organism=Clytia hemisphaerica|type=transcript|length=235bp
AAACACAATAATATAACTGTTTTCTTGGTCAATacgtaaaatattgacct
taTCCTGCACAcagacctcgcaagctcggtctgtACTTCGGCTGCGGTCA
ATATTTTGCCGTATTGACCTCCAAACCAGTTATTATTGTATTAGATGTTA
GATTAGTTTGCTATTCAATAGACACCAtcaatctaactcttgcattGAAT
GCCGCTTTTGTTTGAGAAAtaccctcttttgccct
Run BLAST on NCBI

transcript from alignment at scaffold_30:12872..13106

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057875 ID=TCONS_00057875|Name=TCONS_00057875|organism=Clytia hemisphaerica|type=transcript|length=235bp|location=Sequence derived from alignment at scaffold_30:12872..13106 (Clytia hemisphaerica)
agggcaaaagagggtaTTTCTCAAACAAAAGCGGCATTCaatgcaagagt
tagattgaTGGTGTCTATTGAATAGCAAACTAATCTAACATCTAATACAA
TAATAACTGGTTTGGAGGTCAATACGGCAAAATATTGACCGCAGCCGAAG
TacagaccgagcttgcgaggtctgTGTGCAGGAtaaggtcaatattttac
gtATTGACCAAGAAAACAGTTATATTATTGTGTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036486XLOC_036486Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057875-exon-scaffold_30-1491911889:12872..13106TCONS_00057875-exon-scaffold_30-1491911889:12872..13106Clytia hemisphaericaexon
TCONS_00057875-exon-scaffold_30-1510915933:12872..13106TCONS_00057875-exon-scaffold_30-1510915933:12872..13106Clytia hemisphaericaexon
TCONS_00057875-exon-scaffold_30-1575043694:12872..13106TCONS_00057875-exon-scaffold_30-1575043694:12872..13106Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_30supercontigscaffold_30:12872..13106 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	1.10374	0	1.3146	0	0	1.17331	1.64293	2.03503	0.987626	3.24613	3.24162	2.69316	3.87475	2.37612	0	2.2502	2.07252	1.08437	0.942514	0	1.11771	0	0	0	1.33668	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057875 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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