TCONS_00057873 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057873
Unique NameTCONS_00057873
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1439

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057873 ID=TCONS_00057873|Name=TCONS_00057873|organism=Clytia hemisphaerica|type=transcript|length=1439bp
ctgTTATCAAAACAACTTTGTCAGAGAAATCGAAGGTTACGTTCGATGAG
GCCATAGTTTCTTTCCGATGTATCTATACACACAATTCTGATGTCAACTC
GATTGTGAGAATCAACtaaaaaatttacctttttatGCTACTTCTCATAC
TTGTAAAAATGTACATAATAATCCCATGagacaaaaagaacaataggata
aatgtttataaaaaaagataattgATTTAGGATTACTTTTTCATTGTCCT
AGTTTacctttttatgaaaaaaaagacaaattatTTTCCGGATGAGTGTA
GCTTCTATCCCTAGAGAGATTTATCAGTTAtcgtttttcacattttgagT
TGAGCAATAGAGCATAAATAGGCCAACATTTTTTATCACAACTCACTTCT
GGGTCGAACAGCAGAGTTTGTATCAAAAACAGTAACATTGGTTTGACttt
gtcaaaaagaaaaatggtttCATCAAACGTGGTTTATGACTTCTCTGGAA
AAGTCGTCTTAATAACAGGCGCTGCCTCAGGAATTGGTCAAGGCACTGCT
TACATGTTTGCAAAATCTGGTGCTCGACTCGTTGTCACAGACCGCGATGA
AACCAATTTGAAGGAAACTGCCAAGAAATGTGAAGAGATGAGCAAACAAA
AACCATTGGCAATCGTCGGTGATTTAACAGTTCAAAGTGACCTTGAGAAT
CTAATCAACAAAACAATGGAGACTTTCAAACAACTTGATGTTTTGATCAA
TAATGCAGGAGATTCGATCATGGGAACTTGTCTACAAACATCGACTGaag
attttgataaaatgatGAATATTAATATCCGATCCGTTTTTCAACTAACA
AAGATGGCGATACCACACTTGAAGAAAACTAAAGGAAATGTTATCAACGT
GTCAACCCTCGGCAGTTCACGCCCTCAAATTGGCTTTAGCGCTTATTGCA
TGAGCAAAGCAGCATTAGATCAGTTCACAAGAGCTGCAGCCATCGAATTA
GGAGCTGATCAAGTTCGTGTCAATTGTGTCAACCCAAGCATCATTGCCAC
TGATAAATGCTCAAACAGCTCAGATCCTAGTGTCAAAGCTGCAATGGAGA
GGAGTAAAATGACACACGCCCTTGGCCGTGCTGGTACAGTTGACGAAGTA
GCCCAAGCCATCTTGTTTCTAGCGTCAGGAGCTGCTTCATACATCACAGG
AGCATCGATTCCTATTGACGGGGGTCGATCAACTATGATTCCAGTCTAAC
ATAATTGCCTTATGATGTAAATACGACGAGGACATTAAATCTGAATAAAT
ATCTGTTTCAGTTCAAATAATCTTTGTTCAATTCAATTCCCACCAACAAT
ATACAGCTTTAAACAACATAGTTTGTCTTTTTCGAGGAAGCTTTTAAATT
TTGCTACACACAATATCAGCTATTAGATGTAGATAAACC
Run BLAST on NCBI

protein sequence of TCONS_00057873-protein

>TCONS_00057873-protein ID=TCONS_00057873-protein|Name=TCONS_00057873-protein|organism=Clytia hemisphaerica|type=polypeptide|length=261bp
MVSSNVVYDFSGKVVLITGAASGIGQGTAYMFAKSGARLVVTDRDETNLK
ETAKKCEEMSKQKPLAIVGDLTVQSDLENLINKTMETFKQLDVLINNAGD
SIMGTCLQTSTEDFDKMMNINIRSVFQLTKMAIPHLKKTKGNVINVSTLG
SSRPQIGFSAYCMSKAALDQFTRAAAIELGADQVRVNCVNPSIIATDKCS
NSSDPSVKAAMERSKMTHALGRAGTVDEVAQAILFLASGAASYITGASIP
IDGGRSTMIPV
Run BLAST on NCBI

transcript from alignment at scaffold_30:33474..37714-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057873 ID=TCONS_00057873|Name=TCONS_00057873|organism=Clytia hemisphaerica|type=transcript|length=4241bp|location=Sequence derived from alignment at scaffold_30:33474..37714- (Clytia hemisphaerica)
CTGTTATCAAAACAACTTTGTCAGAGAAATCGAAGGTTACGTTCGATGAG
GCCATAGTTTCTTTCCGATGTATCTATACACACAATTCTGATGTCAACTC
GATTGTGAGAATCAACTAAAAAATTTACCTTTTTATGCTACTTCTCATAC
TTGTAAAAATGTACATAATAATCCCATGAGACAAAAAGAACAATAGGATA
AATGTTTATAAAAAAAGATAATTGATTTAGGATTACTTTTTCATTGTCCT
AGTTTACCTTTTTATGAAAAAAAAGACAAATTATTTTCCGGATGAGTGTA
GCTTCTATCCCTAGAGAGATTTATCAGTTATCGTTTTTCACATTTTGAGT
TGAGCAATAGAGCATAAATAGGCCAACATTTTTTATCACAACTCACTTCT
GGGTCGAACAGCAGAGTTTGTATCAAAAACAGTAACATTGGTTTGACTTT
GTCAAAAAGAAAAATGGTTTCATCAAACGTGGTTTATGACTTCTCTGGAA
AAGTCGTCTTAATAACAGGTTCGTGTAAATAGAAGCTATTTTTATTTCTT
TTGAAATTTTCTTAAAATTTTCCTTTAGATTTTCCAATTGAAATACACAG
TCAATTCTTTCTAATTCTAACCATCGTCAATGGTGTTTTCAGTAGGTACT
CTGTGTCCCGGGGTACTTAGGCAAATGGAAGGTATGTACCTTTTTTGGAT
TTCCAAAGTCCCGCTAAGGGTTGGAGAAATAACAAAATTTCAACTTTTCA
CCCCCAGAAATATCGAAATTTGGTCAGCATTGGTCAAATTTGTCCCGGTA
AGGGTCGTAAAATTCACAAAATTTTCCTTTATTTTCTCATTTTTAGTCCC
GGTAAGGGTCCGAGGTTCAAAAGTCGGGCGGCACCTCCCTGTCAGCTCTC
AAGCCTAGTACCTCCCTGAGCTCTGTGTTTTCGAAACGTACACATTTTTT
TTGAGGTTAGCCTTTTTCATTATTTTAGGCACCTGAGCTTCGAATTGCTC
TTACCCACTGAATACTTTAGGGCAACATTTTAGAAAATTGAGGCTTTATA
ACACATAAACAATTTGAACCTTGAATTGCTTGAATGAGTAGCACACGCTT
GCGCAACAGCTGTTTTTTATGAAATCTTGGTTTATGAAAGTCTGTTTGAC
ATTTAATTTATTCTTTCAAAATTAGGCGCTGCCTCAGGAATTGGTCAAGG
CACTGCTTACATGTTTGCAAAATCTGGTGCTCGACTCGTTGTCACAGACC
GCGATGAAACCAATTTGAAGGAAACTGCCAAGAAATGTGAAGAGATGAGC
AAACAAAAACCATTGGCAATCGTCGGTGATTTAACAGTTCAAAGTGACCT
TGAGAATCTAATCAACAAAACAATGGAGACTTTCAAACAACTTGATGTTT
TGATCAATAATGCAGGAGATTCGATCATGGGAACTTGTCTACAAACATCG
ACTGAAGATTTTGATAAAATGATGAATATTAATATCCGATCCGTTTTTCA
ACTAACAAAGATGGCGATACCACACTTGAAGAAAACTAAAGGTAAATTGT
ATTTGATCACTTTAATGCGATATTTTCTATCAACTTGTGATCAATCTGAT
TGTCAAAATGAATTTGAACTTGCGACGGCACAAGGAATAGGCTTTTCCAG
AAAAAAAACGTATACCCCCTGTTGAGGAGGTCCATCATGTTGTGGCTGGA
AATGCTGTAACCCCCTGAAATTCCAGGCAATTTTAGGTTTCAACCCCTCT
GGAATTCTGAATTTTAGTAGGATTTAAAAGGCTACCCCCATGGAATTCCA
GTTATTTTTGACAGATTTTTGTATCTCCCTATGGAACTCCACCACATATC
AAACCTTACCCCCTTGCAACGGAAATGGACCTCCTCAACAGGGGTATGTG
GTTTTTTTCTGGAAAAGCCCAATTGAATTTTGAAATGCCCCTTCCAATTT
AAATCAACTTTAACAAAATTATATTCTATGAAAAAAATACAATTATAGGA
GATTACAATTTTCTTATTACAGGAAATGTTATCAACGTGTCAACCCTCGG
CAGTTCACGCCCTGTAAGTAAATTTGTCATCTGAAATCTTTGGCATAATT
TTATATTTCTTCAATTTTAAAATTTTCGAACAAAATCACTAGAAAATGAA
AATTCCTGATACCTTATTGGTATATATTTTCGCGTGTTACAAATTTTCGC
GAATCGCGAAATTTTTTCGAAAAAACGTGTTTCGCGTGTATTAAATTTTG
CGATTGCAGACTTCTGGAAAATTTTCGCGTGTATTAAATTTCGCGATTCG
GAATATAAAGCAAGAAAAAGACTGATTTTGCTTGAAACACAACGTTTTTG
ATNNNNNNNNNNNNNNNNNNNNNNTTTCGCGATTCGGAATATAAAGCAAG
AAAAAGACTGATTTTGCTTGAAACACAACGTTTTTGATGTAAAAATACTA
ACAAATTACTAAGAAAGAATTTTTCGTGTGTATTTAATTTCGCGATTTTG
TAATTTTGAAAAATTTAAACAGTATTTAATTTCGCGAAAATTGACCAAAA
AAACTCGCGAAATTAAGTACCCGCGAAAATTTGTAACACGCGAAAATATA
TACCAATAAGGTAATTTGGATTTAAAAATATTTTGAAAATTGTCAAGCTA
TATTATAGCAATAAAAACAGTCCTAAAAATTTCCTTTTTATTCTCAGCAA
ATTGGCTTTAGCGCTTATTGCATGAGCAAAGCAGCATTAGATCAGTTCAC
AAGAGCTGCAGCCATCGAATTAGGAGCTGATCAAGTTCGTGTCAATTGTG
TCAACCCAAGCATCATTGCCACTGATAAATGCTCAAACAGCTCAGATCCT
AGTGTCAAAGTAAGTAAAACGTTTGAACTAAAGTACATCCCTGTCTCACA
GCCCCGGTGGAACTATTTTTCTCAGTGGGAATGAAAATTCCTATTGAAAT
CCCAATGGGGATATAAATTCTTTTCTTCAAAGGTTAAAAAAAACTCAGTG
GCAAAGGTTTTGAAGTTCAATTTTTAAGCATTCAATTTGGAATGGGGATG
AAATTTTATGTCAATGTTTCCAGTGGGGCTGGGCTCCTAGCGGTTCTGTG
ACACCGGAGTATTTAAGTTGTACAGTTGCTGCTCATTAATTCAATTTTCA
AGGGGAAATTTCATCGAATGAGGGAGCGTGACGAATGGTAAAACGTTGTT
TATGAACGTTTCTTATTAATGGTGGCTTTCAATTATGTCGAATGAGAAAG
CGTCAACTGTATGTGGACGGCAAAACAACCTTTTTTTATTAGATCGTGTA
CTATAGTCCGATGTCTGGGGAGGTTAAGGTTATTCTTTCATACACGAGTC
TAGCAAGGGCTTGTGTATCTTTATTTGTTACCAACTTACTCTTAGGTGCC
AAATAAACAAGGGTTCGATGTAACGGGGGAGGGGTTGGAAAATTTTCAAA
ATTTTAATAAACGGGGGGGACCTAATTGCTGGGGGGTTGGAGATTGTAAT
TCTGAAAACCCAAAAATAAGGTAAACATAGGCTAAAATGATATAGGCTCT
TTGGAGCAAAATAAGGCGACTTCTTTTTGCTAACTGAAAATATTCTTAAA
AACTAATAAACGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNGGGGGGGGGGGGTCCTAATAAGGTCCGGGGGTG
GAAATGTTCCAATAATTAACAAGCGGGGACCGTTTATTTGGAACCTAGGA
GTAAAGCATTTTAATACTCTCAAACAAGGTTTCAAACATAAAACAGGTAT
TTGAAGAACGAAAGTAAAAATCTTGAATGATTATTTCAGGCTGCAATGGA
GAGGAGTAAAATGACACACGCCCTTGGCCGTGCTGGTACAGTTGACGAAG
TAGCCCAAGCCATCTTGTTTCTAGCGTCAGGAGCTGCTTCATACATCACA
GGAGCATCGATTCCTATTGACGGGGGTCGATCAACTATGATTCCAGTCTA
ACATAATTGCCTTATGATGTAAATACGACGAGGACATTAAATCTGAATAA
ATATCTGTTTCAGTTCAAATAATCTTTGTTCAATTCAATTCCCACCAACA
ATATACAGCTTTAAACAACATAGTTTGTCTTTTTCGAGGAAGCTTTTAAA
TTTTGCTACACACAATATCAGCTATTAGATGTAGATAAACC

Coding sequence (CDS) from alignment at scaffold_30:33474..37714-

>TCONS_00057873 ID=TCONS_00057873|Name=TCONS_00057873|organism=Clytia hemisphaerica|type=CDS|length=3930bp|location=Sequence derived from alignment at scaffold_30:33474..37714- (Clytia hemisphaerica)
GCTGCAATGGAGAGGAGTAAAATGACACACGCCCTTGGCCGTGCTGGTAC
AGTTGACGAAGTAGCCCAAGCCATCTTGTTTCTAGCGTCAGGAGCTGCTT
CATACATCACAGGAGCATCGATTCCTATTGACGGGGGTCGATCAACTATG
ATTCCAGTCTAACAAATTGGCTTTAGCGCTTATTGCATGAGCAAAGCAGC
ATTAGATCAGTTCACAAGAGCTGCAGCCATCGAATTAGGAGCTGATCAAG
TTCGTGTCAATTGTGTCAACCCAAGCATCATTGCCACTGATAAATGCTCA
AACAGCTCAGATCCTAGTGTCAAAGAAATGTTATCAACGTGTCAACCCTC
GGCAGTTCACGCCCTGCGCTGCCTCAGGAATTGGTCAAGGCACTGCTTAC
ATGTTTGCAAAATCTGGTGCTCGACTCGTTGTCACAGACCGCGATGAAAC
CAATTTGAAGGAAACTGCCAAGAAATGTGAAGAGATGAGCAAACAAAAAC
CATTGGCAATCGTCGGTGATTTAACAGTTCAAAGTGACCTTGAGAATCTA
ATCAACAAAACAATGGAGACTTTCAAACAACTTGATGTTTTGATCAATAA
TGCAGGAGATTCGATCATGGGAACTTGTCTACAAACATCGACTGAAGATT
TTGATAAAATGATGAATATTAATATCCGATCCGTTTTTCAACTAACAAAG
ATGGCGATACCACACTTGAAGAAAACTAAAGATGGTTTCATCAAACGTGG
TTTATGACTTCTCTGGAAAAGTCGTCTTAATAACAGGCTGCAATGGAGAG
GAGTAAAATGACACACGCCCTTGGCCGTGCTGGTACAGTTGACGAAGTAG
CCCAAGCCATCTTGTTTCTAGCGTCAGGAGCTGCTTCATACATCACAGGA
GCATCGATTCCTATTGACGGGGGTCGATCAACTATGATTCCAGTCTAACA
AATTGGCTTTAGCGCTTATTGCATGAGCAAAGCAGCATTAGATCAGTTCA
CAAGAGCTGCAGCCATCGAATTAGGAGCTGATCAAGTTCGTGTCAATTGT
GTCAACCCAAGCATCATTGCCACTGATAAATGCTCAAACAGCTCAGATCC
TAGTGTCAAAGAAATGTTATCAACGTGTCAACCCTCGGCAGTTCACGCCC
TGCGCTGCCTCAGGAATTGGTCAAGGCACTGCTTACATGTTTGCAAAATC
TGGTGCTCGACTCGTTGTCACAGACCGCGATGAAACCAATTTGAAGGAAA
CTGCCAAGAAATGTGAAGAGATGAGCAAACAAAAACCATTGGCAATCGTC
GGTGATTTAACAGTTCAAAGTGACCTTGAGAATCTAATCAACAAAACAAT
GGAGACTTTCAAACAACTTGATGTTTTGATCAATAATGCAGGAGATTCGA
TCATGGGAACTTGTCTACAAACATCGACTGAAGATTTTGATAAAATGATG
AATATTAATATCCGATCCGTTTTTCAACTAACAAAGATGGCGATACCACA
CTTGAAGAAAACTAAAGATGGTTTCATCAAACGTGGTTTATGACTTCTCT
GGAAAAGTCGTCTTAATAACAGGCTGCAATGGAGAGGAGTAAAATGACAC
ACGCCCTTGGCCGTGCTGGTACAGTTGACGAAGTAGCCCAAGCCATCTTG
TTTCTAGCGTCAGGAGCTGCTTCATACATCACAGGAGCATCGATTCCTAT
TGACGGGGGTCGATCAACTATGATTCCAGTCTAACAAATTGGCTTTAGCG
CTTATTGCATGAGCAAAGCAGCATTAGATCAGTTCACAAGAGCTGCAGCC
ATCGAATTAGGAGCTGATCAAGTTCGTGTCAATTGTGTCAACCCAAGCAT
CATTGCCACTGATAAATGCTCAAACAGCTCAGATCCTAGTGTCAAAGAAA
TGTTATCAACGTGTCAACCCTCGGCAGTTCACGCCCTGCGCTGCCTCAGG
AATTGGTCAAGGCACTGCTTACATGTTTGCAAAATCTGGTGCTCGACTCG
TTGTCACAGACCGCGATGAAACCAATTTGAAGGAAACTGCCAAGAAATGT
GAAGAGATGAGCAAACAAAAACCATTGGCAATCGTCGGTGATTTAACAGT
TCAAAGTGACCTTGAGAATCTAATCAACAAAACAATGGAGACTTTCAAAC
AACTTGATGTTTTGATCAATAATGCAGGAGATTCGATCATGGGAACTTGT
CTACAAACATCGACTGAAGATTTTGATAAAATGATGAATATTAATATCCG
ATCCGTTTTTCAACTAACAAAGATGGCGATACCACACTTGAAGAAAACTA
AAGATGGTTTCATCAAACGTGGTTTATGACTTCTCTGGAAAAGTCGTCTT
AATAACAGGCTGCAATGGAGAGGAGTAAAATGACACACGCCCTTGGCCGT
GCTGGTACAGTTGACGAAGTAGCCCAAGCCATCTTGTTTCTAGCGTCAGG
AGCTGCTTCATACATCACAGGAGCATCGATTCCTATTGACGGGGGTCGAT
CAACTATGATTCCAGTCTAACAAATTGGCTTTAGCGCTTATTGCATGAGC
AAAGCAGCATTAGATCAGTTCACAAGAGCTGCAGCCATCGAATTAGGAGC
TGATCAAGTTCGTGTCAATTGTGTCAACCCAAGCATCATTGCCACTGATA
AATGCTCAAACAGCTCAGATCCTAGTGTCAAAGAAATGTTATCAACGTGT
CAACCCTCGGCAGTTCACGCCCTGCGCTGCCTCAGGAATTGGTCAAGGCA
CTGCTTACATGTTTGCAAAATCTGGTGCTCGACTCGTTGTCACAGACCGC
GATGAAACCAATTTGAAGGAAACTGCCAAGAAATGTGAAGAGATGAGCAA
ACAAAAACCATTGGCAATCGTCGGTGATTTAACAGTTCAAAGTGACCTTG
AGAATCTAATCAACAAAACAATGGAGACTTTCAAACAACTTGATGTTTTG
ATCAATAATGCAGGAGATTCGATCATGGGAACTTGTCTACAAACATCGAC
TGAAGATTTTGATAAAATGATGAATATTAATATCCGATCCGTTTTTCAAC
TAACAAAGATGGCGATACCACACTTGAAGAAAACTAAAGATGGTTTCATC
AAACGTGGTTTATGACTTCTCTGGAAAAGTCGTCTTAATAACAGGCTGCA
ATGGAGAGGAGTAAAATGACACACGCCCTTGGCCGTGCTGGTACAGTTGA
CGAAGTAGCCCAAGCCATCTTGTTTCTAGCGTCAGGAGCTGCTTCATACA
TCACAGGAGCATCGATTCCTATTGACGGGGGTCGATCAACTATGATTCCA
GTCTAACAAATTGGCTTTAGCGCTTATTGCATGAGCAAAGCAGCATTAGA
TCAGTTCACAAGAGCTGCAGCCATCGAATTAGGAGCTGATCAAGTTCGTG
TCAATTGTGTCAACCCAAGCATCATTGCCACTGATAAATGCTCAAACAGC
TCAGATCCTAGTGTCAAAGAAATGTTATCAACGTGTCAACCCTCGGCAGT
TCACGCCCTGCGCTGCCTCAGGAATTGGTCAAGGCACTGCTTACATGTTT
GCAAAATCTGGTGCTCGACTCGTTGTCACAGACCGCGATGAAACCAATTT
GAAGGAAACTGCCAAGAAATGTGAAGAGATGAGCAAACAAAAACCATTGG
CAATCGTCGGTGATTTAACAGTTCAAAGTGACCTTGAGAATCTAATCAAC
AAAACAATGGAGACTTTCAAACAACTTGATGTTTTGATCAATAATGCAGG
AGATTCGATCATGGGAACTTGTCTACAAACATCGACTGAAGATTTTGATA
AAATGATGAATATTAATATCCGATCCGTTTTTCAACTAACAAAGATGGCG
ATACCACACTTGAAGAAAACTAAAGATGGTTTCATCAAACGTGGTTTATG
ACTTCTCTGGAAAAGTCGTCTTAATAACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036484XLOC_036484Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057873-exon-scaffold_30-1575043694:37197..37714TCONS_00057873-exon-scaffold_30-1575043694:37197..37714Clytia hemisphaericaexon
TCONS_00057873-exon-scaffold_30-1575043694:36174..36539TCONS_00057873-exon-scaffold_30-1575043694:36174..36539Clytia hemisphaericaexon
TCONS_00057873-exon-scaffold_30-1575043694:35652..35692TCONS_00057873-exon-scaffold_30-1575043694:35652..35692Clytia hemisphaericaexon
TCONS_00057873-exon-scaffold_30-1575043694:34856..35017TCONS_00057873-exon-scaffold_30-1575043694:34856..35017Clytia hemisphaericaexon
TCONS_00057873-exon-scaffold_30-1575043694:33474..33825TCONS_00057873-exon-scaffold_30-1575043694:33474..33825Clytia hemisphaericaexon
TCONS_00057873-exon-scaffold_30-1510915933:37197..37714TCONS_00057873-exon-scaffold_30-1510915933:37197..37714Clytia hemisphaericaexon
TCONS_00057873-exon-scaffold_30-1510915933:36174..36539TCONS_00057873-exon-scaffold_30-1510915933:36174..36539Clytia hemisphaericaexon
TCONS_00057873-exon-scaffold_30-1510915933:35652..35692TCONS_00057873-exon-scaffold_30-1510915933:35652..35692Clytia hemisphaericaexon
TCONS_00057873-exon-scaffold_30-1510915933:34856..35017TCONS_00057873-exon-scaffold_30-1510915933:34856..35017Clytia hemisphaericaexon
TCONS_00057873-exon-scaffold_30-1510915933:33474..33825TCONS_00057873-exon-scaffold_30-1510915933:33474..33825Clytia hemisphaericaexon
TCONS_00057873-exon-scaffold_30-1491911889:37197..37714TCONS_00057873-exon-scaffold_30-1491911889:37197..37714Clytia hemisphaericaexon
TCONS_00057873-exon-scaffold_30-1491911889:36174..36539TCONS_00057873-exon-scaffold_30-1491911889:36174..36539Clytia hemisphaericaexon
TCONS_00057873-exon-scaffold_30-1491911889:35652..35692TCONS_00057873-exon-scaffold_30-1491911889:35652..35692Clytia hemisphaericaexon
TCONS_00057873-exon-scaffold_30-1491911889:34856..35017TCONS_00057873-exon-scaffold_30-1491911889:34856..35017Clytia hemisphaericaexon
TCONS_00057873-exon-scaffold_30-1491911889:33474..33825TCONS_00057873-exon-scaffold_30-1491911889:33474..33825Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057873-proteinTCONS_00057873-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_30supercontigscaffold_30:33474..37714 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1615.33	1592.6	1578.08	1638.95	22.18	17.6187	3.32128	6.73691	2.10436	4.31435	2.79174	0.905358	0	0	0.312011	0.801018	1.25025	0.236625	1.05748	0.407131	3.56681	1.30683	830.618	669.989	0.0924536	0	33.7695	38.434	380.933	443.395
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002347SDR_fam
IPR016040NAD(P)-bd_dom
Blast
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BLAST of TCONS_00057873 vs. Swiss-Prot (Human)
Match: DCXR (L-xylulose reductase OS=Homo sapiens GN=DCXR PE=1 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 5.441e-37
Identity = 82/248 (33.06%), Postives = 139/248 (56.05%), Query Frame = 2 
Query:  491 FSGKVVLITGAASGIGQGTAYMFAKSGARLVVTDRDETNLKETAKKCEEMSKQKPLAIVGDLTVQSDLENLINKTMETFKQLDVLINNAGDSIMGTCLQTSTEDFDKMMNINIRSVFQLTKMAIPHL--KKTKGNVINVSTLGSSRPQIGFSAYCMSKAALDQFTRAAAIELGADQVRVNCVNPSIIATDKC-SNSSDPSVKAAMERSKMTHALGRAGTVDEVAQAILFLASGAASYITGASIPIDGG 1225
             +G+ VL+TGA  GIG+GT      +GAR+V   R + +L    ++C  +   +P+ +  DL    D E    + + +   +D+L+NNA  +++   L+ + E FD+   +N+R+V Q++++    L  +   G ++NVS+  S R     S YC +K ALD  T+  A+ELG  ++RVN VNP+++ T    +  SDP  KA    +++   LG+   V+ V  AILFL S  +   TG+++P++GG
Sbjct:    5 LAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPGI---EPVCV--DL---GDWEA-TERALGSVGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAVTNHSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWSDPH-KAKTMLNRI--PLGKFAEVEHVVNAILFLLSDRSGMTTGSTLPVEGG 240
The following BLAST results are available for this feature:
BLAST of TCONS_00057873 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DCXR5.441e-3733.06L-xylulose reductase OS=Homo sapiens GN=DCXR PE=1 ... [more]
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