TCONS_00057871 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057871
Unique NameTCONS_00057871
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length454

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057871 ID=TCONS_00057871|Name=TCONS_00057871|organism=Clytia hemisphaerica|type=transcript|length=454bp
CTTATTGCATGAGCAAAGCAGCATTAGATCAGTTCACAAGAGCTGCAGCC
ATCGAATTAGGAGCTGATCAAGTTCGTGTCAATTGCGTCAACCCAAGCAT
CATTGCCACTGAGAAATGCTCAAACAGCTCAGATCCTAGTGTCAAGgCTG
CAATGGAGAGAAGCAAAATGACACACGCTCTGGGACGTGCGGGTACAGTC
GATGAAGTAGCCGCAGCCATCTTGTTTCTAGCGTCAGGAGCTGCTTCATA
CATCACAGGAGCAACCTTTCCTATTGACGGGGGTCGATCAGTCATGATTC
CAGTCTAGAGAATTGCCTTATGATGTAAATATGATGGTAATATCAACTCT
AAATACATTTTTGTTTCAGTTCAAACATAATTGAATTGTCTTTTTCTCCC
TGTTAAAActttaaacctttttttcatCCTTTAGAAATGTATTTTACTGT
TGTG
Run BLAST on NCBI

protein sequence of TCONS_00057871-protein

>TCONS_00057871-protein ID=TCONS_00057871-protein|Name=TCONS_00057871-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
YCMSKAALDQFTRAAAIELGADQVRVNCVNPSIIATEKCSNSSDPSVKAA
MERSKMTHALGRAGTVDEVAAAILFLASGAASYITGATFPIDGGRSVMIP
V
Run BLAST on NCBI

transcript from alignment at scaffold_30:40936..42306+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057871 ID=TCONS_00057871|Name=TCONS_00057871|organism=Clytia hemisphaerica|type=transcript|length=1371bp|location=Sequence derived from alignment at scaffold_30:40936..42306+ (Clytia hemisphaerica)
CTTATTGCATGAGCAAAGCAGCATTAGATCAGTTCACAAGAGCTGCAGCC
ATCGAATTAGGAGCTGATCAAGTTCGTGTCAATTGCGTCAACCCAAGCAT
CATTGCCACTGAGAAATGCTCAAACAGCTCAGATCCTAGTGTCAAGGTAT
TCATTTTCATAATGTTTTCAATCGAGGGTAAACTTCTCCAAGATAAGGTg
tatgaaattttgattttctgatcttattttcttgtgattttttttttcct
gaCCAAAACCACCCAGCACCTGAGTGAATACACTTGTCACCAATAAAAAC
ACCCGCCAATCAAATTTCCACCCTGTTTGTCttgtgattttttgtgattt
ctaatttttttaagattgtttgtaATAAACGATTACGGCTTTCCGAaatc
tccccgaatgattacccatgatgcattgcgcaaaaaaattcacggacgat
attgactttccgtgaatttttttgcgcattgcatcatgggtaatcattcg
gagatttcggaaagccgatatcgtctattcatgGTGTTTCGAAATTCGGG
ACGTTTAAAAGAGACTTGCGAACTAAAAAGGACGATTTTTACAgcatact
ttaggcgtacaaactttcgcgagcagaaactttcgcgaatcaagacataa
aaatgagaattttcacatgaaaaaatggcttagggGGACAAATactttaa
ttgattaaaaaattctGTCCTATGACTTGTTAGTCTTTtggcaggctaaa
aagtgccataaatgttacattttattcaaagtttgaagtcttacagattt
tctatttcgtcaagaatttttcgtgagcataaagtttcgcgaatggccct
tcctagaatttttaaagacatatttaccttcgcgaaaagggccaaaattc
gcgaaaatcgcgaacatttctgctcgcgaaagtttgtacgcctaaagtgt
TTTAGACTTGTTTATGCTCGCCTAAACACAATCGCGTACCCGTTTAAAAA
ATAACTGTCACTTTTGTCAACCTATCTACATAATTCTCAACAGGGactat
ttcatattttcaggCTGCAATGGAGAGAAGCAAAATGACACACGCTCTGG
GACGTGCGGGTACAGTCGATGAAGTAGCCGCAGCCATCTTGTTTCTAGCG
TCAGGAGCTGCTTCATACATCACAGGAGCAACCTTTCCTATTGACGGGGG
TCGATCAGTCATGATTCCAGTCTAGAGAATTGCCTTATGATGTAAATATG
ATGGTAATATCAACTCTAAATACATTTTTGTTTCAGTTCAAACATAATTG
AATTGTCTTTTTCTCCCTGTTAAAActttaaacctttttttcatCCTTTA
GAAATGTATTTTACTGTTGTG

Coding sequence (CDS) from alignment at scaffold_30:40936..42306+

>TCONS_00057871 ID=TCONS_00057871|Name=TCONS_00057871|organism=Clytia hemisphaerica|type=CDS|length=612bp|location=Sequence derived from alignment at scaffold_30:40936..42306+ (Clytia hemisphaerica)
TATTGCATGAGCAAAGCAGCATTAGATCAGTTCACAAGAGCTGCAGCCAT
CGAATTAGGAGCTGATCAAGTTCGTGTCAATTGCGTCAACCCAAGCATCA
TTGCCACTGAGAAATGCTCAAACAGCTCAGATCCTAGTGTCAAGgCTGCA
ATGGAGAGAAGCAAAATGACACACGCTCTGGGACGTGCGGGTACAGTCGA
TGAAGTAGCCGCAGCCATCTTGTTTCTAGCGTCAGGAGCTGCTTCATACA
TCACAGGAGCAACCTTTCCTATTGACGGGGGTCGATCAGTCATGATTCCA
GTCTAGTATTGCATGAGCAAAGCAGCATTAGATCAGTTCACAAGAGCTGC
AGCCATCGAATTAGGAGCTGATCAAGTTCGTGTCAATTGCGTCAACCCAA
GCATCATTGCCACTGAGAAATGCTCAAACAGCTCAGATCCTAGTGTCAAG
gCTGCAATGGAGAGAAGCAAAATGACACACGCTCTGGGACGTGCGGGTAC
AGTCGATGAAGTAGCCGCAGCCATCTTGTTTCTAGCGTCAGGAGCTGCTT
CATACATCACAGGAGCAACCTTTCCTATTGACGGGGGTCGATCAGTCATG
ATTCCAGTCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036483XLOC_036483Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057871-proteinTCONS_00057871-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057871-exon-scaffold_30-1491911889:40936..41081TCONS_00057871-exon-scaffold_30-1491911889:40936..41081Clytia hemisphaericaexon
TCONS_00057871-exon-scaffold_30-1510915933:40936..41081TCONS_00057871-exon-scaffold_30-1510915933:40936..41081Clytia hemisphaericaexon
TCONS_00057871-exon-scaffold_30-1575043694:40936..41081TCONS_00057871-exon-scaffold_30-1575043694:40936..41081Clytia hemisphaericaexon
TCONS_00057871-exon-scaffold_30-1491911889:41999..42306TCONS_00057871-exon-scaffold_30-1491911889:41999..42306Clytia hemisphaericaexon
TCONS_00057871-exon-scaffold_30-1510915933:41999..42306TCONS_00057871-exon-scaffold_30-1510915933:41999..42306Clytia hemisphaericaexon
TCONS_00057871-exon-scaffold_30-1575043694:41999..42306TCONS_00057871-exon-scaffold_30-1575043694:41999..42306Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_30supercontigscaffold_30:40936..42306 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2830.34	2818.05	3051.66	3453.98	24.6053	21.7582	8.19159	8.36603	3.30782	5.55258	4.32505	1.22581	0.674147	0.400062	0.772204	0.983069	2.21761	1.87853	0.4618	0.32216	6.5129	3.28864	1430.87	1044.74	0.777365	1.52632	65.2306	86.5643	608.87	701.043
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002347SDR_fam
IPR016040NAD(P)-bd_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057871 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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