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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057869 ID=TCONS_00057869|Name=TCONS_00057869|organism=Clytia hemisphaerica|type=transcript|length=747bp
GTTTTTGTATTATTGCtgaagtttttaattattttaaacaTTACATCTTT
ATAAGCAAAAGGGTCTATAAccaatatatataaaaaagaaagccaATTAT
TGGTATACAAATTATAGAATGTCAAATAACGTTTTCTGGTTTGACTGTGC
TGCAAACGATGAGGAAAATgtgaacaaaacaaaaacatctaGACCAAAGT
TATCCTCTGATAGAAAGCCTAAAAAATGTAATTCAGTTGAAGAGATTCAG
AAAAAGATTGACGAAGCAAGTAAACGAAGAGAGGAGCAAAATAACAGAAG
ATCTCAAAATGCTGCTCGATGTAGAGAAAGTATGCTTGCTCTTGCTCAAA
AAATGGACAAGTTAAATAAACATGAAACTGCCAAAAAAACTGGAAATATc
aacaatgaaaatattttggctaAAAGAGAATATTGTAAAATTGCATCTGA
AGTATCAATGCAATTCGAAACACTTTCCAGAAAGTACGAGAAGGATTTGT
CAAGCTCTTAAACTCCCTTAAACTCTTAAAATTaaagagattttttaaat
tataagATTGTATATAGGTAATGTTCTGCACAATATATGaattaatattt
tgattttatgatGGGTGtatattgttttgatttatttttgtactGTATAG
AAAAAACTTTGACTTAATAAATGCTTTATGAAGTGTGTATTTTACATCAA
ACTTaagtttttcataaattttgtcCACTCTCTAAATTAAATCTTgc Run BLAST on NCBI transcript from alignment at scaffold_30:13761..15864+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057869 ID=TCONS_00057869|Name=TCONS_00057869|organism=Clytia hemisphaerica|type=transcript|length=2104bp|location=Sequence derived from alignment at scaffold_30:13761..15864+ (Clytia hemisphaerica)
GTTTTTGTATTATTGCtgaagtttttaattattttaaacaTTACATCTTT
ATAAGCAAAAGGGTCTATAAccaatatatataaaaaagaaagccaATTAT
TGGTATACAAATTATAGAATGTCAAATAACGTTTTCTGGTTTGACTGTGC
TGCAAACGATGAGGAAAATgtgaacaaaacaaaaacatctaGACCAAAGT
TATCCTCTGATAGAAAGCCTAAAAAATGTAATTCAGTTGAAGAGATTCAG
AAAAAGATTGACGAAGCAAGTAAACGAAGAGAGgtaattaaaaatgttta
aaatgttGTATCATTCCATTTTACTATAAAATAATAAGCAGACAGGCCAT
TTCTCATGTCCTTTTAGTGTCCGGTTATCGGACACTGCACTTCCCGAATT
TGCAaagattttggtaaaaacagccccCAGCccactagggcaagatgggt
tacggggatgctccgctggtcagggtaccttttttaacctccacgagtca
caggtagggttgcaaaaacaccaaaatagaaaaatcagtccctcgtaggg
tgcctttttttggaaaatttgggggaaaagtagaaaatttgagaaaattt
tgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNGGAAACAGCCTTTTTGGTGAAAAAC
ACAAGAAAGGTGCCCTTTTTGACTACCACCAGGAGAcactgccctgcctt
tctaaaatattgcCTGGCAGATATTCATTCAGTGTATTTTCATAAtatca
acaaaacaaagaagaagTGTAGGTACCTGAAAAATATTTCTGTTTCTGGT
CAGTTGGCACAtcaatatttctttgttttttttaaagtttgatttGCAAG
GACGTTATTgtgttatattttttaaaatataatgCAATGCAATTTTATAA
ATGATGCAAAAAATAATACCATACTTTTTTTAACTTCTATTTATCATAAT
AGAAGACTGAGTGTTTAGAAAATGGATTTAGGGATAGAAATCTCAATACC
ATACCATTGCAACCAACGCGAGTTCCAGTggacttgaaataaaaatattt
tttggtttaCAACTGTTGGGTGGTTGAAATTGGCAATAAGATGACATAAT
CTAATAGGTGCCTGTCAAACTATCATTTaccatttttattccaaatatAC
ATCCTTTTTGGATTTTCtatctgaaaattattttcatgtcCCCTCAGCTA
CTCTTTAGGCTATCAAACTTTATTCAGCTTTTACTAGACGCCTGGTAAAT
TATTAAAAGAGATTATCTACAAGTACAACAAAACAGTGTGCTTCCCGCAA
CGTAAACAGTGAACAGTGCCAAAAGTGTccatatcatttgaaaatcattc
AGCTGAATTTTTTCTTAGACAAGGCTCTTTACTTTTTCAGGAGCAAAATA
ACAGAAGATCTCAAAATGCTGCTCGATGTAGAGAAAGTATGCTTGCTCTT
GCTCAAAAAATGGACAAGTTAAATAAACATGAAACTGCCAAAAAAACTGG
AAATATcaacaatgaaaatattttggctaAAAGAGAATATTGTAAAATTG
CATCTGAAGTATCAATGCAATTCGAAACACTTTCCAGAAAGTACGAGAAG
GATTTGTCAAGCTCTTAAACTCCCTTAAACTCTTAAAATTaaagagattt
tttaaattataagATTGTATATAGGTAATGTTCTGCACAATATATGaatt
aatattttgattttatgatGGGTGtatattgttttgatttatttttgtac
tGTATAGAAAAAACTTTGACTTAATAAATGCTTTATGAAGTGTGTATTTT
ACATCAAACTTaagtttttcataaattttgtcCACTCTCTAAATTAAATC
TTgc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057869-exon-scaffold_30-1491911889:13761..14043 | TCONS_00057869-exon-scaffold_30-1491911889:13761..14043 | Clytia hemisphaerica | exon |
| TCONS_00057869-exon-scaffold_30-1510915933:13761..14043 | TCONS_00057869-exon-scaffold_30-1510915933:13761..14043 | Clytia hemisphaerica | exon |
| TCONS_00057869-exon-scaffold_30-1575043694:13761..14043 | TCONS_00057869-exon-scaffold_30-1575043694:13761..14043 | Clytia hemisphaerica | exon |
| TCONS_00057869-exon-scaffold_30-1491911889:15401..15864 | TCONS_00057869-exon-scaffold_30-1491911889:15401..15864 | Clytia hemisphaerica | exon |
| TCONS_00057869-exon-scaffold_30-1510915933:15401..15864 | TCONS_00057869-exon-scaffold_30-1510915933:15401..15864 | Clytia hemisphaerica | exon |
| TCONS_00057869-exon-scaffold_30-1575043694:15401..15864 | TCONS_00057869-exon-scaffold_30-1575043694:15401..15864 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_30 | supercontig | scaffold_30:13761..15864 + |
Blast
The following BLAST results are available for this feature:
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