TCONS_00057865 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057865
Unique NameTCONS_00057865
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length628

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057865 ID=TCONS_00057865|Name=TCONS_00057865|organism=Clytia hemisphaerica|type=transcript|length=628bp
TCCGCATCctggttctttttttttttcatgaaggAAACTCAGAACTTTAA
AGACTACCAGATCAGCACATTTAATTcagcattttcaaattcaacaaatt
attcaaaaagtaaaagattGCAACAAAAGTAAGATATTTTTCCCAATATC
AGCCATCAGCTTTGGAGCAAAATAACAGAAGATCTCAAAATGCTGCTCGA
TGTAGAGAAAGTATGCTTGCTCTTGCTCAAAAAATGGACAAGTTAAATAA
ACATGAAACTGCCAAAAAAACTGGAAATATcaacaatgaaaatattttgg
ctaAAAGAGAATATTGTAAAATTGCATCTGAAGTATCAATGCAATTCGAA
ACACTTTCCAGAAAGTACGAGAAGGATTTGTCAAGCTCTTAAACTCCCTT
AAACTCTTAAAATTaaagagattttttaaattataagATTGTATATAGGT
AATGTTCTGCACAATATATGaattaatattttgattttatgatGGGTGta
tattgttttgatttatttttgtactGTATAGAAAAAACTTTGACTTAATA
AATGCTTTATGAAGTGTGTATTTTACATCAAACTTaagtttttcataaat
tttgtcCACTCTCTAAATTAAATCTTgc
Run BLAST on NCBI

transcript from alignment at scaffold_30:7483..15864+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057865 ID=TCONS_00057865|Name=TCONS_00057865|organism=Clytia hemisphaerica|type=transcript|length=8382bp|location=Sequence derived from alignment at scaffold_30:7483..15864+ (Clytia hemisphaerica)
TCCGCATCctggttctttttttttttcatgaaggAAACTCAGAACTTTAA
AGACTACCAGATCAGCACATTTAATTcagcattttcaaattcaacaaatt
attcaaaaagtaaaagattGCAACAAAAGTAAGATATTTTTCCCAATATC
AGCCATCAGCTTTGGTAAGTTTtctgtgttttcattttatttttagatga
aaaataagcacgaccctgccgattccccggGGAATCACGGTAGAGCGCgg
tggtttgagttttctggaagccttatttattaagctgtgcatttttctga
tagtggattgTTAAATACAGCAGagttagggcaaaagagggtaTTTCTCA
AACAAAAGCGGCATTCAatgatgcaagagttagattgaTGGTGTCTATTG
AATAGCAAACTAATCTTACAATAATAACTGGTTTGgaggtcaatatttta
cgtATTGACCAAGAAAACAGTTATATTATTGTGTTTATTAACTGGTGAAC
ATTCTTTGTGCGTTTCTGGccaaaaaaatgcattttccaCTCATtttagg
accctgccgacgcaccggacttaacgaacaccggacacgcgaaagtccgg
tgtaaaatgagaatttttttaccaccggacaatttctacaccggattTAA
GGAAGTCAGGTGTCCGGTGTcgaagaaggatattttttcccaacGGACAA
TCAatacaccggacatgaccagtccggtgcgtccggtgtttcttaatttt
ttgtttcataaatgtccggcgtccaaaattccctgtatgcaacaccggac
tgacaccgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAcccc
ggactgacaccggacttattgcgtccggtgtagcgaaaggatactttttg
ccaccggacaaatacaccggacagtccggtgcgtcggcagggtcctctca
ttttccatgattttttcgtttcttttttacccaatattttctttgattta
ttcTGACGTCACTTTGTTATGAGAAGTCATTGCAACGTCAGCTTTTACTT
CAACCAGTTAATAATATCCAGTACAAACTGAATAAATTATCATGTACCTA
GGTGCTGTGTTGTAAATGACAAATCTtaagttttcattaaaaaaatttct
actgGGTTTATTAGTTATTCATAAGACGAAgttctcccaaacaactattt
tttgattggaaaaaataaaacatcGATCAATACGGTGATTATTTGGCAGA
TTCATAAGTGTCTGtgattaaacaaaataaaataataattctaTTTCCTT
GTTCTTCATGCTCGCAAATTCAAGAGtttttctctttgatcttttattgG
TCTCTTTTGTTGATTGCTTGTGTGTCATCAATGACTCCCGAGTCATTTCT
TGAAATGGAAACACACAAATTTTACCAAGCTGAATATCTGTATATaatat
agaccttttgctaatcaggatgTCATGTTAGGATAGTTAAAGACTCAAGC
ATCAAAATAGCGGTGAGAAAAAATTAGTGTACACTTGTTATAGTTATGCC
TTGAAATGTGTTTTTGTATTATTGCtgaagtttttaattattttaaacaT
TACATCTTTATAAGCAAAAGGGTCTATAAccaatatatataaaaaagaaa
gccaATTATTGGTATACAAATTATAGAATGTCAAATAACGTTTTCTGGTT
TGACTGTGCTGCAAACGATGAGGAAAATgtgaacaaaacaaaaacatcta
GACCAAAGTTATCCTCTGATAGAAAGCCTAAAAAATGTAATTCAGTTGAA
GAGATTCAGAAAAAGATTGACGAAGCAAGTAAACGAAGAGAGgtaattaa
aaatgtttaaaatgttGTATCATTCCATTTTACTATAAAATAATAAGCAG
ACAGGCCATTTCTCATGTCCTTTTAGTGTCCGGTTATCGGACACTGCCCT
TCCCGAATTTGCAaagattttggtaaaaacagcctttttggTGAAAAACA
GCCTTATAATACCATACTTTTTCTAACTTCTAtttatcataaaaaaattc
actccattaagaattagtgaataaggctgAACCTGTGTGGAAACACGTGG
GAGAGGCCAGTATTTTTCNATTTTACCAAGCTGAATATCTGTATATaata
tagaccttttgctaatcaggatgTCATGTTAGGATAGTTAAAGACTCAAG
CATCAAAATAGTGATGAGAAAAAATTAGTATACACTTGTTATAGTTATGC
CTTGAAATGTGTTTTTGTATTATTGCtgaagtttttaattattttaaaca
TTACATCTTTATAAGCAAAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNTCTGATATCAATAAAGATAGTTGACATGC
TACCGATATTTTGATTGTTCCAAACCATTCCCCGCTCGTGTGCAGTCTGA
CACGGCACAAACACTCCCAGTTATTCAAAGCGATTTCTATTCCCCTTGGG
GAATTAAAGTTCAATTGAAAATCTGgtggaaaaacaatttttcaattcga
aCTCCTGGCTATTTGAagtaaattcttaaaaattatcCCCCTTGGAGCTT
TGAATAACTGGAGGTCTACtgtatctttttcaaaaagactcccaataaaa
ataattgaatgCCTCTGTAACTATAATAGAAGCATGTGCTTAATCCCAAT
TTCTACCAAGCCTTAAAAATATGAGATTTCTGCATGCTGcattatttatt
atttcaattattctgCACtacagtaaaatcaaaaaaaattcaacacaATA
GCAAAGAATATTTTCATACCTTTTTGACGAGATATGCTTTGCTTGTTGCA
TCAGATAAGCAATAGAATGAAGCTACAGCATAACTTAAACCGACAACTCT
TTTTGATACAAATTGTCTAAAAGCTTCTCCAACCTCGTTGGCATAACCTG
TTTGGAAagtaaaataaaacatttttgtgTTATTTCAGTTAATTTGCACT
GGTCTTTAGGGGGAGTTAATACTGAAACNCTTGTgttatttcagttaatt
ttcactGGTCTTTAGGGGGAGTTAATACTGAAACATCCTGTTGGAAGTAA
ATATCTCAAATAAATTATGAATATAATTTCAGGTGCTAGCAAAATTTCAG
ATTCCAggcaatttaatttaatttaatttaaactTCTAAGAAATTTATAC
GCTTTTACAACATAGCTGTTACCAAGGTACCTACAAAATAGTTTATCCCG
TTTGTACTGGCTGGAGTATTTTGTTATTGAATAGACCGGTTGACAGGTTG
ACCGCCACGTTCTCCCAAAAACTATTTTGCAGGGTTTGAGGATTTAGCAA
GGATGAAAAAAACCATCCCAGTAGAAATACGCAGAACTACGCAGAACACT
TGCAAACTCCCTAATgggggaaaaaaatttcaacctgtcaatcattttga
ttttctcaatatccttttattttcatttctggaacTTTTGTCTTTTATTG
CATTtgcaaaaacaggaaaaatacaaaagttgtTACTGCTGATTTTTCTC
CTGCTTTTCCGGGACTTTAGCTAAAGTGCTTGTGTGCAGCATtaggtaca
aagtccaaattaaaaaatttggtttgacCAAGGGCTGTTATACCACCAAC
AACTAACTGCACTGCacacacaaaaaaacaaaaattaaaaaagatacCAT
CAGATCATTATTGGAAAAACAGTATACCTAAGTATCTTATTGGAGTATCT
CTGAAATAATCTATCTCATCATCTTTCTGCTTTGCTCTGGTCTGATCACT
CATTTCCCTCGAACAGCTGCTAGTCTTGGTCTGATGATGACCTGGTCAAA
GACAGACAGAAAAAAAGGACCAAAGTCAAGTTAGCGACACATTCAGCGAC
ACATTCAGCGACACATTCAGCGACACTTTCGCTTTCAGCGACACTTTCAG
CgacacattcgaattcttttgtatttttcatgctGAAGGAGAGAATTCCN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttcatttgagggct
atgcatgttagccttcactgatgcaagttaccctttttcacggtagtGGA
TTGTTAAATACAGCAGAGTTAGGCCCTGACATTTAagttagggcaaaaga
gggtaTTTCTCAAACAAAAGCGGCATTCaatgcaagagttagattgaTGG
TGTCTATTGAATAGCAAACTAATCTAACATCTAATACAATAATAACTGGT
TTGGAGGTCAATACGGCAAAATATTGACCGCAGCCGAAGTacagaccgag
cttgcgaggtctgTGTGCAGGAtaaggtcaatattttacgtATTGACCAA
GAAAACAGTTATATTATTGTGTTTATTAACTGGTGAACATTCTTTGTGCG
TTTCTGGGcaaaaaatgcattttccactcattttccatgattttttcgtt
tcttttttacCCAATATTTTCTTAGATTTATTCTGACGTCACTGCAACGT
CAGCTTTTACTTCAACCAGTTAATAATATCCAGTACAAACTGAATAAATT
ATCTTGTACCTAGGTGCTGTGTTGTAAATGACAAATCTtaagttttcatt
aaaaaaatttctactgGGTTTATTAGTTATTCATAAGACAAAgttctccc
aaacaactattttttgattggaaaaaataaaacatcGATCAATACGGTGA
TCACAAAATATTTGGCAGATTCATAAGTGTCTGtgattaaacaaaataaa
ataataattctaTTTCCTTGTTCTTCATGCTCGCCAATTCGAGAGttttt
ctctttgatcttttattgGTCTCTTTTGTTGATTGCTTGTGTGTCATCAA
TGACTCCCGAGTCATTTCTTGAAATGGAAACACACAAATTTTACCAAGCT
GAATATCTGTATATaatatagaccttttgctaatcaggatgTCATGTTAG
GATAGTTAAAGACTCAAGCATCAAAATAGTGATGAGAAAAAATTAGTGTA
CACTTGTTATAGTTATGCCTTGAAATGTGTTTTTGTATTATTGCtgaagt
ttttaattattttaaacaTTACATCTTTATAAGCAAAAGGGTCTATAAcc
aatatatataaaaaagaaagccaATTATTGGTATACAAATTATAGAATGT
CAAATAACGTTTTCTGGTTTGACTGTGCTGCAAACGATGAGGAAAATgtg
aacaaaacaaaaacatctaGACCAAAGTTATCCTCTGATAGAAAGCCTAA
AAAATGTAATTCAGTTGAAGAGATTCAGAAAAAGATTGACGAAGCAAGTA
AACGAAGAGAGgtaattaaaaatgtttaaaatgttGTATCATTCCATTTT
ACTATAAAATAATAAGCAGACAGGCCATTTCTCATGTCCTTTTAGTGTCC
GGTTATCGGACACTGCACTTCCCGAATTTGCAaagattttggtaaaaaca
gccccCAGCccactagggcaagatgggttacggggatgctccgctggtca
gggtaccttttttaacctccacgagtcacaggtagggttgcaaaaacacc
aaaatagaaaaatcagtccctcgtagggtgcctttttttggaaaatttgg
gggaaaagtagaaaatttgagaaaattttgNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNGGAAACAGCCTTTTTGGTGAAAAACACAAGAAAGGTGCCCTTTTTGA
CTACCACCAGGAGAcactgccctgcctttctaaaatattgcCTGGCAGAT
ATTCATTCAGTGTATTTTCATAAtatcaacaaaacaaagaagaagTGTAG
GTACCTGAAAAATATTTCTGTTTCTGGTCAGTTGGCACAtcaatatttct
ttgttttttttaaagtttgatttGCAAGGACGTTATTgtgttatattttt
taaaatataatgCAATGCAATTTTATAAATGATGCAAAAAATAATACCAT
ACTTTTTTTAACTTCTATTTATCATAATAGAAGACTGAGTGTTTAGAAAA
TGGATTTAGGGATAGAAATCTCAATACCATACCATTGCAACCAACGCGAG
TTCCAGTggacttgaaataaaaatattttttggtttaCAACTGTTGGGTG
GTTGAAATTGGCAATAAGATGACATAATCTAATAGGTGCCTGTCAAACTA
TCATTTaccatttttattccaaatatACATCCTTTTTGGATTTTCtatct
gaaaattattttcatgtcCCCTCAGCTACTCTTTAGGCTATCAAACTTTA
TTCAGCTTTTACTAGACGCCTGGTAAATTATTAAAAGAGATTATCTACAA
GTACAACAAAACAGTGTGCTTCCCGCAACGTAAACAGTGAACAGTGCCAA
AAGTGTccatatcatttgaaaatcattcAGCTGAATTTTTTCTTAGACAA
GGCTCTTTACTTTTTCAGGAGCAAAATAACAGAAGATCTCAAAATGCTGC
TCGATGTAGAGAAAGTATGCTTGCTCTTGCTCAAAAAATGGACAAGTTAA
ATAAACATGAAACTGCCAAAAAAACTGGAAATATcaacaatgaaaatatt
ttggctaAAAGAGAATATTGTAAAATTGCATCTGAAGTATCAATGCAATT
CGAAACACTTTCCAGAAAGTACGAGAAGGATTTGTCAAGCTCTTAAACTC
CCTTAAACTCTTAAAATTaaagagattttttaaattataagATTGTATAT
AGGTAATGTTCTGCACAATATATGaattaatattttgattttatgatGGG
TGtatattgttttgatttatttttgtactGTATAGAAAAAACTTTGACTT
AATAAATGCTTTATGAAGTGTGTATTTTACATCAAACTTaagtttttcat
aaattttgtcCACTCTCTAAATTAAATCTTgc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036482XLOC_036482Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057865-exon-scaffold_30-1491911889:7483..7646TCONS_00057865-exon-scaffold_30-1491911889:7483..7646Clytia hemisphaericaexon
TCONS_00057865-exon-scaffold_30-1510915933:7483..7646TCONS_00057865-exon-scaffold_30-1510915933:7483..7646Clytia hemisphaericaexon
TCONS_00057865-exon-scaffold_30-1575043694:7483..7646TCONS_00057865-exon-scaffold_30-1575043694:7483..7646Clytia hemisphaericaexon
TCONS_00057865-exon-scaffold_30-1491911889:15401..15864TCONS_00057865-exon-scaffold_30-1491911889:15401..15864Clytia hemisphaericaexon
TCONS_00057865-exon-scaffold_30-1510915933:15401..15864TCONS_00057865-exon-scaffold_30-1510915933:15401..15864Clytia hemisphaericaexon
TCONS_00057865-exon-scaffold_30-1575043694:15401..15864TCONS_00057865-exon-scaffold_30-1575043694:15401..15864Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_30supercontigscaffold_30:7483..15864 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.3343	0.723257	4.59475	8.43652	3.97839	3.25701	3.5758	1.03288	2.79334	3.82717	3.09315	2.37691	0.210072	0.440675	0.657944	0.16155	0	1.14351	0.872768	0.859411	0.569709	2.7799	0	2.68094	0.487485	0	1.78781	2.6079	0	1.3806
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057865 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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