TCONS_00057864 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057864
Unique NameTCONS_00057864
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1091

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057864 ID=TCONS_00057864|Name=TCONS_00057864|organism=Clytia hemisphaerica|type=transcript|length=1091bp
NNGCTCCTTACTTTGCTGGTATGTCAGCATTGAGATTTGGAGCTGATTTA
GTTCATATTTTCTGTTCTCAAAGTGCTGCTACCCCGATCAAATGTTACAG
TCCAGAACTCATAGTTCATCCTATGGGAAGTGACCCATTGAAAGCTGATC
AAGTGTTAGAGCAGTGGTTTGAACGATTGCATACTGTTTTGATTGGGCCT
GGTCTGGGAAGAAGTGAGGAAGCAGTCAGGCTAGTGAACTCAATTGCCCA
GAAAGGGCTGGGTGGAAAACCTCTTATCATTGACGCTGATGGTTTATTTA
TGGTCTCTGAAAACCCTCTATTACTAGTTGGTGCCAAAAATGTCACTTTA
ACACCTAATCAAGTTGAATATAGAAGACTTTGTACAGCCATTGCTAACCT
TGGAACAACAAAAACTGGTATGGATAACCCCGAGTTGATGTTAACAGAGT
TTTTTGGCTCAGAAGTGACAATAGTTAAAAAGGGACAAAGTGATGTTATT
TTTAACAAACATGGGAAAATAGAAGTTGATATTAATGGAGGTTTATGTAG
ATGTGGCGGTCAAGGAGATGTGCTTTCAGGAAGTATTGCTTTATTCACTC
ATTGGGCTCAAGAAGCTAAACATGAGAATCCAGCATTATTTGGTGCTTAT
GCCGGATGTTATGTCACCAAAAAATTgagtgaaaaagttttcaatgaaAT
GGGACGGTCTATGGTCGCTGGAGATATGATTTCAGCGATTCCtagttttt
tgaaagattctttCTATTGAACTGCATTTCTTGATAAGAAAAATTGAGAC
AGGTACTTTTTGTGCAAAGATTCTTCTGTTTTTGAATCAAATTTAgctat
gaaaaattttcaagtgccttagttttgtttttctatatgCAAATGTGGAA
ACCATATTTTATGTCCCCGGGTATTTCTCTTTTGTACATAGCTAGGATAC
CATTTTGTTATcatttactttcactttcactttcctcCATagtgacataa
tcagcctatttttcatgcaaagaaaaaaaacatttgttttgattggaagg
ttcttaaaagaactaattaaaaatgttatttgctcattctc
Run BLAST on NCBI

protein sequence of TCONS_00057864-protein

>TCONS_00057864-protein ID=TCONS_00057864-protein|Name=TCONS_00057864-protein|organism=Clytia hemisphaerica|type=polypeptide|length=255bp
APYFAGMSALRFGADLVHIFCSQSAATPIKCYSPELIVHPMGSDPLKADQ
VLEQWFERLHTVLIGPGLGRSEEAVRLVNSIAQKGLGGKPLIIDADGLFM
VSENPLLLVGAKNVTLTPNQVEYRRLCTAIANLGTTKTGMDNPELMLTEF
FGSEVTIVKKGQSDVIFNKHGKIEVDINGGLCRCGGQGDVLSGSIALFTH
WAQEAKHENPALFGAYAGCYVTKKLSEKVFNEMGRSMVAGDMISAIPSFL
KDSFY
Run BLAST on NCBI

transcript from alignment at scaffold_3:138475..139565

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057864 ID=TCONS_00057864|Name=TCONS_00057864|organism=Clytia hemisphaerica|type=transcript|length=1091bp|location=Sequence derived from alignment at scaffold_3:138475..139565 (Clytia hemisphaerica)
gagaatgagcaaataacatttttaattagttcttttaagaaccttccaat
caaaacaaatgttttttttctttgcatgaaaaataggctgattatgtcac
tATGgaggaaagtgaaagtgaaagtaaatgATAACAAAATGGTATCCTAG
CTATGTACAAAAGAGAAATACCCGGGGACATAAAATATGGTTTCCACATT
TGcatatagaaaaacaaaactaaggcacttgaaaatttttcatagcTAAA
TTTGATTCAAAAACAGAAGAATCTTTGCACAAAAAGTACCTGTCTCAATT
TTTCTTATCAAGAAATGCAGTTCAATAGaaagaatctttcaaaaaactaG
GAATCGCTGAAATCATATCTCCAGCGACCATAGACCGTCCCATttcattg
aaaactttttcactcAATTTTTTGGTGACATAACATCCGGCATAAGCACC
AAATAATGCTGGATTCTCATGTTTAGCTTCTTGAGCCCAATGAGTGAATA
AAGCAATACTTCCTGAAAGCACATCTCCTTGACCGCCACATCTACATAAA
CCTCCATTAATATCAACTTCTATTTTCCCATGTTTGTTAAAAATAACATC
ACTTTGTCCCTTTTTAACTATTGTCACTTCTGAGCCAAAAAACTCTGTTA
ACATCAACTCGGGGTTATCCATACCAGTTTTTGTTGTTCCAAGGTTAGCA
ATGGCTGTACAAAGTCTTCTATATTCAACTTGATTAGGTGTTAAAGTGAC
ATTTTTGGCACCAACTAGTAATAGAGGGTTTTCAGAGACCATAAATAAAC
CATCAGCGTCAATGATAAGAGGTTTTCCACCCAGCCCTTTCTGGGCAATT
GAGTTCACTAGCCTGACTGCTTCCTCACTTCTTCCCAGACCAGGCCCAAT
CAAAACAGTATGCAATCGTTCAAACCACTGCTCTAACACTTGATCAGCTT
TCAATGGGTCACTTCCCATAGGATGAACTATGAGTTCTGGACTGTAACAT
TTGATCGGGGTAGCAGCACTTTGAGAACAGAAAATATGAACTAAATCAGC
TCCAAATCTCAATGCTGACATACCAGCAAAGTAAGGAGCNN

Coding sequence (CDS) from alignment at scaffold_3:138475..139565

>TCONS_00057864 ID=TCONS_00057864|Name=TCONS_00057864|organism=Clytia hemisphaerica|type=CDS|length=768bp|location=Sequence derived from alignment at scaffold_3:138475..139565 (Clytia hemisphaerica)
TCAATAGaaagaatctttcaaaaaactaGGAATCGCTGAAATCATATCTC
CAGCGACCATAGACCGTCCCATttcattgaaaactttttcactcAATTTT
TTGGTGACATAACATCCGGCATAAGCACCAAATAATGCTGGATTCTCATG
TTTAGCTTCTTGAGCCCAATGAGTGAATAAAGCAATACTTCCTGAAAGCA
CATCTCCTTGACCGCCACATCTACATAAACCTCCATTAATATCAACTTCT
ATTTTCCCATGTTTGTTAAAAATAACATCACTTTGTCCCTTTTTAACTAT
TGTCACTTCTGAGCCAAAAAACTCTGTTAACATCAACTCGGGGTTATCCA
TACCAGTTTTTGTTGTTCCAAGGTTAGCAATGGCTGTACAAAGTCTTCTA
TATTCAACTTGATTAGGTGTTAAAGTGACATTTTTGGCACCAACTAGTAA
TAGAGGGTTTTCAGAGACCATAAATAAACCATCAGCGTCAATGATAAGAG
GTTTTCCACCCAGCCCTTTCTGGGCAATTGAGTTCACTAGCCTGACTGCT
TCCTCACTTCTTCCCAGACCAGGCCCAATCAAAACAGTATGCAATCGTTC
AAACCACTGCTCTAACACTTGATCAGCTTTCAATGGGTCACTTCCCATAG
GATGAACTATGAGTTCTGGACTGTAACATTTGATCGGGGTAGCAGCACTT
TGAGAACAGAAAATATGAACTAAATCAGCTCCAAATCTCAATGCTGACAT
ACCAGCAAAGTAAGGAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036481XLOC_036481Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057864-proteinTCONS_00057864-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057864-exon-scaffold_3-1491911889:138475..139565TCONS_00057864-exon-scaffold_3-1491911889:138475..139565Clytia hemisphaericaexon
TCONS_00057864-exon-scaffold_3-1510915933:138475..139565TCONS_00057864-exon-scaffold_3-1510915933:138475..139565Clytia hemisphaericaexon
TCONS_00057864-exon-scaffold_3-1575043694:138475..139565TCONS_00057864-exon-scaffold_3-1575043694:138475..139565Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:138475..139565 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
26.2664	23.2996	27.7818	30.2546	13.8324	11.102	12.2563	10.3123	8.98248	9.23689	6.4389	5.27745	4.94909	5.97314	6.12129	5.9808	10.8102	9.22313	1.88141	2.05824	4.86138	5.40636	27.7644	23.7743	10.1921	10.6765	4.74336	2.94316	14.0634	17.4184
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000631CARKD
IPR029056Ribokinase-like
IPR017953Carbohydrate_kinase_pred_CS
Vocabulary: Molecular Function
TermDefinition
GO:0052855ADP-dependent NAD(P)H-hydrate dehydratase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0052855 ADP-dependent NAD(P)H-hydrate dehydratase activity
Blast
[Close]
BLAST of TCONS_00057864 vs. Swiss-Prot (Human)
Match: NNRD (ATP-dependent (S)-NAD(P)H-hydrate dehydratase OS=Homo sapiens GN=NAXD PE=1 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 1.770e-59
Identity = 102/252 (40.48%), Postives = 149/252 (59.13%), Query Frame = 3 
Query:    3 APYFAGMSALRFGADLVHIFCSQSAATPIKCYSPELIVHPMGSDPLKADQVLEQWFERLHTVLIGPGLGRSEEAVRLVNSIAQKGLGGK-PLIIDADGLFMVSENPLLLVGAKNVTLTPNQVEYRRLCTAIANLGTTKTGMDNPELMLTEFFGSEVTIVKKGQSDVIFNKHGKIEVDINGGLCRCGGQGDVLSGSIALFTHWA-----QEAKHENPALFGAYAGCYVTKKLSEKVFNEMGRSMVAGDMISAI 740
            APYFA +SAL+ GADL H+FC+ +AA  IK YSPELIVHP+   P    +V E+W  RLH +++GPGLGR +  +R V  I +       P++IDADGL++V++ P L+ G +   LTPN VE+ RL  A+              L L++  G+ VT+V+KG+ D++ N    +     G   RCGGQGD+LSGS+ +  HWA     Q+    +P L  A+  C +T++ + + F + GRS    DMI+ +
Sbjct:   88 APYFAAISALKVGADLSHVFCASAAAPVIKAYSPELIVHPVLDSPNAVHEV-EKWLPRLHALVVGPGLGRDDALLRNVQGILEVSKARDIPVVIDADGLWLVAQQPALIHGYRKAVLTPNHVEFSRLYDAVLRGPMDSDDSHGSVLRLSQALGN-VTVVQKGERDILSNGQQVLVCSQEGSSRRCGGQGDLLSGSLGVLVHWALLAGPQKTNGSSPLLVAAFGACSLTRQCNHQAFQKHGRSTTTSDMIAEV 337
The following BLAST results are available for this feature:
BLAST of TCONS_00057864 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NNRD1.770e-5940.48ATP-dependent (S)-NAD(P)H-hydrate dehydratase OS=H... [more]
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