TCONS_00057862 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057862
Unique NameTCONS_00057862
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length237

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057862 ID=TCONS_00057862|Name=TCONS_00057862|organism=Clytia hemisphaerica|type=transcript|length=237bp
ACCCTTCTCAATCTTGGATCTGGAACAGCACCACTGTACAAATTTTGGCC
AAGATGTAAGGTAAACATGTTGAACAAAAGTGCACAACGTTTACGTGTTT
GACAGTAGATCAAGCGACGTTTGGAGGAATCACCATTGTTCACAATATCT
TGAATTACAAAGGCAAAAATGATGGACAGACTGACTTTAGGGACCATTTG
TACCTGATAATAAATGTTCTTTCAGTCAGGATCAAGA
Run BLAST on NCBI

transcript from alignment at scaffold_3:55864..56100

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057862 ID=TCONS_00057862|Name=TCONS_00057862|organism=Clytia hemisphaerica|type=transcript|length=237bp|location=Sequence derived from alignment at scaffold_3:55864..56100 (Clytia hemisphaerica)
TCTTGATCCTGACTGAAAGAACATTTATTATCAGGTACAAATGGTCCCTA
AAGTCAGTCTGTCCATCATTTTTGCCTTTGTAATTCAAGATATTGTGAAC
AATGGTGATTCCTCCAAACGTCGCTTGATCTACTGTCAAACACGTAAACG
TTGTGCACTTTTGTTCAACATGTTTACCTTACATCTTGGCCAAAATTTGT
ACAGTGGTGCTGTTCCAGATCCAAGATTGAGAAGGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036479XLOC_036479Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057862-exon-scaffold_3-1491911889:55864..56100TCONS_00057862-exon-scaffold_3-1491911889:55864..56100Clytia hemisphaericaexon
TCONS_00057862-exon-scaffold_3-1510915933:55864..56100TCONS_00057862-exon-scaffold_3-1510915933:55864..56100Clytia hemisphaericaexon
TCONS_00057862-exon-scaffold_3-1575043694:55864..56100TCONS_00057862-exon-scaffold_3-1575043694:55864..56100Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:55864..56100 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.920496	0	0	22.9133	16.0946	4.85437	6.8169	4.77267	0.985287	0.956344	0.628663	2.51115	0.651965	1.60801	1.72564	0	0.726309	3.01031	1.05002	0	0	0	0	15.2021	13.5675	1.29434	0	0	2.13489
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057862 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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