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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057861 ID=TCONS_00057861|Name=TCONS_00057861|organism=Clytia hemisphaerica|type=transcript|length=1489bp
CCTTAGGGAGGTCTTTTGTCTCATCAGGAGTTGCAGACGCTTGAGACGCA
GTATCAGGAGATTCATCCTCTTGAGATGCGTTTAAATTGGTTGTGGTAAG
TAATTGTTGGTCGGTTTCGACTGAATGAGGTGTAGATAATCTATCTCTGT
CTGGAGGTTGCTCCATCTTGATAGTTTGGTCTGATGTACTTTGTGNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAgtaactaaaaacta
aaaaatgaaaaaatccaagatggccGCCAGGACCATGTGCTGACCTAAAC
CTAAAGTGACTTGAGGCAAAGACACACCTGGATGAAAAACAAAAGCAAAC
AAGAAAGCTTACCAGCTGCCATATGGAATCTTGCTGAGAGTGAGTGAATC
AAATATGGCTATACTGATAGCTGAGTGAACATTCAAAACAATTCTTTGAC
ATGTAAATCAAATTTAATGTTTGAGTAGTGACATCCTGACTTGACCAATG
TCAATGTCAACTGACTATGCTCAAAAAGTGAGTGGTCAAAAAAGTGAGTC
ATGACTGTGGTCTGGTGTGAAAAGTCACCAAATGTGCACCAAAaagtgat
gatgtcatcatgtcaaaatcaaaacaaatatgctaacttaaaatgtaaac
aaagctaCCAAACCTacgaaatatgaaaattataatataaaatgaaaatt
ctgaaaatatattgaatttaTCTTACaattaaacaagcagNAAAACATCA
AGAAAGTAATAGAGCATggtacaaaaaaaacaaagaaactatTATTGAAA
ATAACAAAACCTATCGTTCCCGAAACAAAGAGCaaatcaatgaaaaaaga
aaatatcgttcccaaaacaaagagaaaataaaggaaACAAATGGAATCTA
CCGAgcccaaaacaaagagaaagttAATGAAAAAGATAGAATCTATCATC
AAAATAACAAAGATCAAATAgcggaaagaaaaaaatcaaactatgaaaaa
aaaataaactatgAAAAAATACACTCAACTATAAACAAAAACTGTAATAA
TGATctagtttccaaatttttgaaacttattTATGAAGGTCCCTTTTACA
TTTGTGTTTGCTGTAACAGATGCCTCTATCGAAAAACAGTTATCAAATAT
GCACCTGAAAAATATGATATGCCACAAGAATATTATTATTCTGAAGTTTT
TTCATTTGATGGCCAATTATACATTTGCAAAACATGCCAtagcaaactta
aaaaaaatgaattgcCATGCCAATCTGTTAAAAATAAACTTTGCCTCGAT
GAATTACCTgctgaatttcatactcttcGCAGGCttgaaaagattttgat
ttctcgcagaattttattcaaaaaaattgcaattatGCCAAAAGGTCAGT
TCCCCAAACTCAAAGGTTCTATTTGTAATGTACCTATTGATGTTGAAGAT
ATTGCTAATACTTTACCAAGAAGAGCAAATGATAATGNN Run BLAST on NCBI protein sequence of TCONS_00057861-protein >TCONS_00057861-protein ID=TCONS_00057861-protein|Name=TCONS_00057861-protein|organism=Clytia hemisphaerica|type=polypeptide|length=107bp
MPQEYYYSEVFSFDGQLYICKTCHSKLKKNELPCQSVKNKLCLDELPAEF
HTLRRLEKILISRRILFKKIAIMPKGQFPKLKGSICNVPIDVEDIANTLP
RRANDNX Run BLAST on NCBI transcript from alignment at scaffold_3:39007..40495 Legend: exonCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057861 ID=TCONS_00057861|Name=TCONS_00057861|organism=Clytia hemisphaerica|type=transcript|length=1489bp|location=Sequence derived from alignment at scaffold_3:39007..40495 (Clytia hemisphaerica)
NNCATTATCATTTGCTCTTCTTGGTAAAGTATTAGCAATATCTTCAACAT
CAATAGGTACATTACAAATAGAACCTTTGAGTTTGGGGAACTGACCTTTT
GGCataattgcaatttttttgaataaaattctgcgagaaatcaaaatctt
ttcaaGCCTGCgaagagtatgaaattcagcAGGTAATTCATCGAGGCAAA
GTTTATTTTTAACAGATTGGCATGgcaattcattttttttaagtttgcta
TGGCATGTTTTGCAAATGTATAATTGGCCATCAAATGAAAAAACTTCAGA
ATAATAATATTCTTGTGGCATATCATATTTTTCAGGTGCATATTTGATAA
CTGTTTTTCGATAGAGGCATCTGTTACAGCAAACACAAATGTAAAAGGGA
CCTTCATAaataagtttcaaaaatttggaaactagATCATTATTACAGTT
TTTGTTTATAGTTGAGTGTATTTTTTcatagtttatttttttttcatagt
ttgatttttttctttccgcTATTTGATCTTTGTTATTTTGATGATAGATT
CTATCTTTTTCATTaactttctctttgttttgggcTCGGTAGATTCCATT
TGTttcctttattttctctttgttttgggaacgatattttcttttttcat
tgatttGCTCTTTGTTTCGGGAACGATAGGTTTTGTTATTTTCAATAata
gtttctttgttttttttgtaccATGCTCTATTACTTTCTTGATGTTTTNc
tgcttgtttaattGTAAGAtaaattcaatatattttcagaattttcattt
tatattataattttcatatttcgtAGGTTTGGtagctttgtttacatttt
aagttagcatatttgttttgattttgacatgatgacatcatcacttTTTG
GTGCACATTTGGTGACTTTTCACACCAGACCACAGTCATGACTCACTTTT
TTGACCACTCACTTTTTGAGCATAGTCAGTTGACATTGACATTGGTCAAG
TCAGGATGTCACTACTCAAACATTAAATTTGATTTACATGTCAAAGAATT
GTTTTGAATGTTCACTCAGCTATCAGTATAGCCATATTTGATTCACTCAC
TCTCAGCAAGATTCCATATGGCAGCTGGTAAGCTTTCTTGTTTGCTTTTG
TTTTTCATCCAGGTGTGTCTTTGCCTCAAGTCACTTTAGGTTTAGGTCAG
CACATGGTCCTGGCggccatcttggattttttcattttttagtttttagt
tacTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACAAA
GTACATCAGACCAAACTATCAAGATGGAGCAACCTCCAGACAGAGATAGA
TTATCTACACCTCATTCAGTCGAAACCGACCAACAATTACTTACCACAAC
CAATTTAAACGCATCTCAAGAGGATGAATCTCCTGATACTGCGTCTCAAG
CGTCTGCAACTCCTGATGAGACAAAAGACCTCCCTAAGG Coding sequence (CDS) from alignment at scaffold_3:39007..40495 >TCONS_00057861 ID=TCONS_00057861|Name=TCONS_00057861|organism=Clytia hemisphaerica|type=CDS|length=321bp|location=Sequence derived from alignment at scaffold_3:39007..40495 (Clytia hemisphaerica)
NNCATTATCATTTGCTCTTCTTGGTAAAGTATTAGCAATATCTTCAACAT
CAATAGGTACATTACAAATAGAACCTTTGAGTTTGGGGAACTGACCTTTT
GGCataattgcaatttttttgaataaaattctgcgagaaatcaaaatctt
ttcaaGCCTGCgaagagtatgaaattcagcAGGTAATTCATCGAGGCAAA
GTTTATTTTTAACAGATTGGCATGgcaattcattttttttaagtttgcta
TGGCATGTTTTGCAAATGTATAATTGGCCATCAAATGAAAAAACTTCAGA
ATAATAATATTCTTGTGGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057861-exon-scaffold_3-1491911889:39007..40495 | TCONS_00057861-exon-scaffold_3-1491911889:39007..40495 | Clytia hemisphaerica | exon |
| TCONS_00057861-exon-scaffold_3-1510915933:39007..40495 | TCONS_00057861-exon-scaffold_3-1510915933:39007..40495 | Clytia hemisphaerica | exon |
| TCONS_00057861-exon-scaffold_3-1575043694:39007..40495 | TCONS_00057861-exon-scaffold_3-1575043694:39007..40495 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_3 | supercontig | scaffold_3:39007..40495 . |
Blast
The following BLAST results are available for this feature:
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