TCONS_00057858 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057858
Unique NameTCONS_00057858
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length326

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057858 ID=TCONS_00057858|Name=TCONS_00057858|organism=Clytia hemisphaerica|type=transcript|length=326bp
TGAGGTATATCTGACAAAAGATTCACAATTTCGTTATCATCAGTGCTTGT
TGTAGCAATCCACTCTGTCTCGAGAAATCGAACGTAGTTTTCCTCTGCCT
GGTGAATACAAAGGTTTTGAATGGGTGAATAAATCCATACATCAAAACAA
CCCATATCAAACAAAGACTTGATGAAGTATCTCAGCTGTATGGACCGAGA
TTCAAAATGCCTGTCAAAATAAATGCGATCGATATCAGGATCAATGCGAG
GGACGATGGTGATATTTTTCCTTCCAGTACATAGCAATCCACTACAAGTT
GATTGTGAAGTTATGAACATTATTGC
Run BLAST on NCBI

protein sequence of TCONS_00057858-protein

>TCONS_00057858-protein ID=TCONS_00057858-protein|Name=TCONS_00057858-protein|organism=Clytia hemisphaerica|type=polypeptide|length=108bp
AIMFITSQSTCSGLLCTGRKNITIVPRIDPDIDRIYFDRHFESRSIQLRY
FIKSLFDMGCFDVWIYSPIQNLCIHQAEENYVRFLETEWIATTSTDDNEI
VNLLSDIP
Run BLAST on NCBI

transcript from alignment at scaffold_3:13406..13731

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057858 ID=TCONS_00057858|Name=TCONS_00057858|organism=Clytia hemisphaerica|type=transcript|length=326bp|location=Sequence derived from alignment at scaffold_3:13406..13731 (Clytia hemisphaerica)
GCAATAATGTTCATAACTTCACAATCAACTTGTAGTGGATTGCTATGTAC
TGGAAGGAAAAATATCACCATCGTCCCTCGCATTGATCCTGATATCGATC
GCATTTATTTTGACAGGCATTTTGAATCTCGGTCCATACAGCTGAGATAC
TTCATCAAGTCTTTGTTTGATATGGGTTGTTTTGATGTATGGATTTATTC
ACCCATTCAAAACCTTTGTATTCACCAGGCAGAGGAAAACTACGTTCGAT
TTCTCGAGACAGAGTGGATTGCTACAACAAGCACTGATGATAACGAAATT
GTGAATCTTTTGTCAGATATACCTCA

Coding sequence (CDS) from alignment at scaffold_3:13406..13731

>TCONS_00057858 ID=TCONS_00057858|Name=TCONS_00057858|organism=Clytia hemisphaerica|type=CDS|length=324bp|location=Sequence derived from alignment at scaffold_3:13406..13731 (Clytia hemisphaerica)
GCAATAATGTTCATAACTTCACAATCAACTTGTAGTGGATTGCTATGTAC
TGGAAGGAAAAATATCACCATCGTCCCTCGCATTGATCCTGATATCGATC
GCATTTATTTTGACAGGCATTTTGAATCTCGGTCCATACAGCTGAGATAC
TTCATCAAGTCTTTGTTTGATATGGGTTGTTTTGATGTATGGATTTATTC
ACCCATTCAAAACCTTTGTATTCACCAGGCAGAGGAAAACTACGTTCGAT
TTCTCGAGACAGAGTGGATTGCTACAACAAGCACTGATGATAACGAAATT
GTGAATCTTTTGTCAGATATACCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036475XLOC_036475Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057858-exon-scaffold_3-1491911889:13406..13731TCONS_00057858-exon-scaffold_3-1491911889:13406..13731Clytia hemisphaericaexon
TCONS_00057858-exon-scaffold_3-1510915933:13406..13731TCONS_00057858-exon-scaffold_3-1510915933:13406..13731Clytia hemisphaericaexon
TCONS_00057858-exon-scaffold_3-1575043694:13406..13731TCONS_00057858-exon-scaffold_3-1575043694:13406..13731Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057858-proteinTCONS_00057858-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:13406..13731 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.303212	0	0.617933	0	1.90356	2.89109	1.80348	2.42872	0.312205	7.91874	0.883565	0.547941	1.85789	2.20326	5.4267	4.06082	0.687814	1.07736	3.12571	3.16245	0.423901	0.966062	0.559249	1.10475	3.65517	6.12361	1.19068	0	0.336542	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057858 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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