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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057853 ID=TCONS_00057853|Name=TCONS_00057853|organism=Clytia hemisphaerica|type=transcript|length=3356bpRun BLAST on NCBI protein sequence of TCONS_00057853-protein >TCONS_00057853-protein ID=TCONS_00057853-protein|Name=TCONS_00057853-protein|organism=Clytia hemisphaerica|type=polypeptide|length=643bp RFPRFSDSSSPKLKFQNGAFTFPQTILVEKMAGSQMLFACTKCHSRHKFDRun BLAST on NCBI transcript from alignment at scaffold_3:110677..125286- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00057853 ID=TCONS_00057853|Name=TCONS_00057853|organism=Clytia hemisphaerica|type=transcript|length=14610bp|location=Sequence derived from alignment at scaffold_3:110677..125286- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_3:110677..125286- >TCONS_00057853 ID=TCONS_00057853|Name=TCONS_00057853|organism=Clytia hemisphaerica|type=CDS|length=25116bp|location=Sequence derived from alignment at scaffold_3:110677..125286- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00057853 vs. Swiss-Prot (Human)
Match: FA76B (Protein FAM76B OS=Homo sapiens GN=FAM76B PE=1 SV=3) HSP 1 Score: 165.622 bits (418), Expect = 4.602e-44 Identity = 119/338 (35.21%), Postives = 189/338 (55.92%), Query Frame = 2
Query: 92 MAGSQMLFACTKCHSRHKFDDLSKEEQLCKDCRRKYPLINCTYCQLEFHILKKVKGQAVCGKCAHNLQTYGEPKKCKYCFVKAAFKEKTCVRCTSSEKKYGKPIQCQGCALNCAFQKTKETKAKVNGKILCLKCTLQFKKDRHKTQKQQR----------------KDQQSSLGNPV-----------------LAPLKAENITKSLYKTGL---DSTDHSRHSIIGRAEN------NNSIEPTFGDHMTELTSLREQIIQLKRTIGQXXXXXXXXXXXXXXXXXXQWEKEKLLRSKTQTLQKQYDERIENLQIENSNLKRQVSQLSKVKKTPKADKV 979
MA S L+ACTKC R+ F++LS+ +QLCK+CR +P++ CTYC+ EF ++ K +C KCA N++ +G PK C+YC + AAF C RCT+SEKKYG P C+ C CAF + +E + KV+GK+LC CTL +K+ KT++Q++ KDQ + L+P + + + K +K+ + T + + + N N S + D+ ++ L+E+++ LKR + Q+++ ILEKDKK++ELK+D +E LR+K +++K + E +E LQ +N L +QV+ LSK KK K+ +
Sbjct: 1 MAAS-ALYACTKCTQRYPFEELSQGQQLCKECRIAHPIVKCTYCRSEFQ--QESKTNTICKKCAQNVKQFGTPKPCQYCNIIAAFIGTKCQRCTNSEKKYGPPQTCEQCKQQCAFDRKEEGRRKVDGKLLCWLCTLSYKRVLQKTKEQRKSLGSSHSNSSSSSLTEKDQHHPKHHHHHHHHHHRHSSSHHKISNLSPEEEQGLWKQSHKSSATIQNETPKKKPKLESKPSNGDSSSINQSADSGGTDNFVLISQLKEEVMSLKRLLQQRDQTILEKDKKLTELKADFQYQESNLRTKMNSMEKAHKETVEQLQAKNRELLKQVAALSKGKKFDKSGSI 335 The following BLAST results are available for this feature:
BLAST of TCONS_00057853 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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