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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057851 ID=TCONS_00057851|Name=TCONS_00057851|organism=Clytia hemisphaerica|type=transcript|length=1441bp
ATCTGATCGGTATTAAATGTGGTTTTGCCGGttgaagattaaaataattt
gaatatatttcttttctttcaagatATTCCAAATCGACACGTCGAATAAT
GATACAGCTATCAAGTATCCCGGATTGAGAAGTTCACACATCTTCATATT
GGACGGCATACAATCAGGAAAAGGTAGTATCAATGACGGCGGTATATAAT
GACATCAAAAGGAGGGATACTGTTAAAGTGCGGAATAGTGTACAAGAACC
ACTGGATGAACCGATAATCGAGATCGTTCTCAGATAGACATGACCCTTAA
TTGTCAACTTGACTAAAACACGGCAGGAAAATCATTTATTCACCATCGAA
GCGCTAAGAATTATGCACCCGACTCTATCCACGGAGATTATTTATGCAAA
TATTTTTACTATTCCCctatatcagtgacccggtcagctCCACTTGATGG
ATAACCTGGCGAAAGAAATTACATAGAACCCAAATCAAAGATCTTATTTA
TGGTCTTACCCCGGCCAACAATCGTTAATTTATTTAAGAATTCTTGGAAT
ATTACTTGAAATTACTTTTTCCCTACCCGAGGAAGTTAAAAGTTATCACT
TAGTGAGTTTTGGAGACCCTATAGTCAGACCCGgtgggtttcaaaacttc
actgggtcactgagaaaggggtgttctattatgtatgaaatataaaaaat
gtacgTTTATGTGTGTCAGTAAATGTCCGGGACAGTGTATATCATCCGTT
TATGTCCACACGCTGGGGCTTTACAATAACCAAACATCATCAAATTTTAC
ACTTGCGTTTAATTCCCAGTTTAGTGAAATCGGAGAGGTGATGTCGCAGT
TATTGGTGAATTTTACCCAATGGAGAGAAGATAAAAATTCCAATTGGGGG
AAAGAGAAAGATCCATTGAGTAATTCAGTCATTTTTAAGGGTTGAGTTTG
TCAATAGAACTTCCAAAAGGAGATGAACTTGAACGATTCGGGGGGAAATg
atgacaattttgaaaattcaacacAAGTTTATCCCGTCACAATTTTTCCC
CGACTTAATTAAACCCCAAATCTTCTTCCCcaattaaatattttgcaacA
GAAATTTACGACTGCAATTTCCCGTGTTAGGTCCCACCGGGTTCTGTGAT
ACAAGTGTGTAGGGCAGATTATTATGTTCTTCTGTTGCTCGCTTTTCCTT
TTGACATGTGATCGGTACAGCTTCGGTAAAACAACAAACGCAAAGCAAAT
GCTTGCAGagtttgtttgttcttataaacttcgTTTCTTGATCCATCCTG
ATTCCAAAGAGGACAGGGCCTAAAAATGAAATCGGAAAAACGGTTAATTA
ATAAGCACGTTGTTACTTAACACGATCCCACCAAACCGGTTTACTGCCTA
GTAATCGTAAAAATATACGTGAACAATTAACGAGCCGTAAT Run BLAST on NCBI transcript from alignment at scaffold_3:83891..85832- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057851 ID=TCONS_00057851|Name=TCONS_00057851|organism=Clytia hemisphaerica|type=transcript|length=1942bp|location=Sequence derived from alignment at scaffold_3:83891..85832- (Clytia hemisphaerica)
ATCTGATCGGTATTAAATGTGGTTTTGCCGGTTGAAGATTAAAATAATTT
GAATATATTTCTTTTCTTTCAAGATATTCCAAATCGACACGTCGAATAAT
GATACAGCTATCAAGTATCCCGGATTGAGAAGTTCACACATCTTCATATT
GGACGGCATACAATCAGGAAAAGGTATTTCGTTCTCGAATGTTTTCACCT
GATTTTATCGTCATCCTTTATACCATTTTAATATGTATCTTTCTTCTAGT
AAAATAATTTTATCATGCACCCCTATTTTAGGTCGTTGACTACTGAATGA
CAAAAATTTATCCCAACATAGATAAAGTAAAGTTACATCTTCTAATTTCN
ATGACAAAAATTTATCCCAGCATAGATAAATAGTAAAGTTACATCTTTTA
ATTTCCAGGATTTTGACATTAACATTTGCGTTCTAGGTAGTATCAATGAC
GGCGGTATATAATGACATCAAAAGGAGGGATACTGTTAAAGTGCGGAATA
GTGTACAAGTAAGTACTCTCGGGTACCTAATAGCTGGGGGGCGCTAATTA
ATCTTTCGAAAATTTTCCACCCATGATATTTTTATAACCCCCCACCTGCT
TATTAAGTTTTGTGATAACGTTAACTGTAAATTTCTTTACATGTCTAATA
AATATTCGATGGGTTTGATTGTGATTTCTAATCTAAAGAGCTAAGGTAAT
GAAGCCCTGAACATACCTATTTTTATTCATTCGTTGTCTTTTATAGGAAC
CACTGGATGAACCGATAATCGAGATCGTTCTCAGATAGACATGACCCTTA
ATTGTCAACTTGACTAAAACACGGCAGGAAAATCATTTATTCACCATCGA
AGCGCTAAGAATTATGCACCCGACTCTATCCACGGAGATTATTTATGCAA
ATATTTTTACTATTCCCCTATATCAGTGACCCGGTCAGCTCCACTTGATG
GATAACCTGGCGAAAGAAATTACATAGAACCCAAATCAAAGATCTTATTT
ATGGTCTTACCCCGGCCAACAATCGTTAATTTATTTAAGAATTCTTGGAA
TATTACTTGAAATTACTTTTTCCCTACCCGAGGAAGTTAAAAGTTATCAC
TTAGTGAGTTTTGGAGACCCTATAGTCAGACCCGGTGGGTTTCAAAACTT
CACTGGGTCACTGAGAAAGGGGTGTTCTATTATGTATGAAATATAAAAAA
TGTACGTTTATGTGTGTCAGTAAATGTCCGGGACAGTGTATATCATCCGT
TTATGTCCACACGCTGGGGCTTTACAATAACCAAACATCATCAAATTTTA
CACTTGCGTTTAATTCCCAGTTTAGTGAAATCGGAGAGGTGATGTCGCAG
TTATTGGTGAATTTTACCCAATGGAGAGAAGATAAAAATTCCAATTGGGG
GAAAGAGAAAGATCCATTGAGTAATTCAGTCATTTTTAAGGGTTGAGTTT
GTCAATAGAACTTCCAAAAGGAGATGAACTTGAACGATTCGGGGGGAAAT
GATGACAATTTTGAAAATTCAACACAAGTTTATCCCGTCACAATTTTTCC
CCGACTTAATTAAACCCCAAATCTTCTTCCCCAATTAAATATTTTGCAAC
AGAAATTTACGACTGCAATTTCCCGTGTTAGGTCCCACCGGGTTCTGTGA
TACAAGTGTGTAGGGCAGATTATTATGTTCTTCTGTTGCTCGCTTTTCCT
TTTGACATGTGATCGGTACAGCTTCGGTAAAACAACAAACGCAAAGCAAA
TGCTTGCAGAGTTTGTTTGTTCTTATAAACTTCGTTTCTTGATCCATCCT
GATTCCAAAGAGGACAGGGCCTAAAAATGAAATCGGAAAAACGGTTAATT
AATAAGCACGTTGTTACTTAACACGATCCCACCAAACCGGTTTACTGCCT
AGTAATCGTAAAAATATACGTGAACAATTAACGAGCCGTAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057851-exon-scaffold_3-1575043694:85660..85832 | TCONS_00057851-exon-scaffold_3-1575043694:85660..85832 | Clytia hemisphaerica | exon |
| TCONS_00057851-exon-scaffold_3-1575043694:85325..85396 | TCONS_00057851-exon-scaffold_3-1575043694:85325..85396 | Clytia hemisphaerica | exon |
| TCONS_00057851-exon-scaffold_3-1575043694:83891..85086 | TCONS_00057851-exon-scaffold_3-1575043694:83891..85086 | Clytia hemisphaerica | exon |
| TCONS_00057851-exon-scaffold_3-1510915933:85660..85832 | TCONS_00057851-exon-scaffold_3-1510915933:85660..85832 | Clytia hemisphaerica | exon |
| TCONS_00057851-exon-scaffold_3-1510915933:85325..85396 | TCONS_00057851-exon-scaffold_3-1510915933:85325..85396 | Clytia hemisphaerica | exon |
| TCONS_00057851-exon-scaffold_3-1510915933:83891..85086 | TCONS_00057851-exon-scaffold_3-1510915933:83891..85086 | Clytia hemisphaerica | exon |
| TCONS_00057851-exon-scaffold_3-1491911889:85660..85832 | TCONS_00057851-exon-scaffold_3-1491911889:85660..85832 | Clytia hemisphaerica | exon |
| TCONS_00057851-exon-scaffold_3-1491911889:85325..85396 | TCONS_00057851-exon-scaffold_3-1491911889:85325..85396 | Clytia hemisphaerica | exon |
| TCONS_00057851-exon-scaffold_3-1491911889:83891..85086 | TCONS_00057851-exon-scaffold_3-1491911889:83891..85086 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_3 | supercontig | scaffold_3:83891..85832 - |
Blast
The following BLAST results are available for this feature:
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