TCONS_00057819 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057819
Unique NameTCONS_00057819
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1508

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057819 ID=TCONS_00057819|Name=TCONS_00057819|organism=Clytia hemisphaerica|type=transcript|length=1508bp
GTCAATACTTCAGCACCTTTACTGGTCATCAAAATCATGTTTTCCACCCT
TATGCTGATACCATGGTATTCTTTTGGAGCAAAGTCCGCACCAAGTGAGA
TATATATACCAGGTTCAATCGTAAACACCATTCCAACTTGCAACGGAATA
CCACTGTGTAGGGAAGGCGTATCATGCACGTCTAATCCGATATGGTGTCC
AACAAAGTGCGGACAAAATTTCCGCACATGAGTCCGTGTCTCATTCGATG
AAAGATTTTTCAGAATCAGCGATAGACTTTGTAACCCTTCGCTAAGAAAG
TTTAACATGCTCTCATGAAGCATTTCAAGGGAAACACCAACACGACATCT
CATCAATAACTCATCATGTGCGCTCTGAACTATCCTATAAATCATTGACC
TCGGGTCCGGACCCAAACGGCCGGAGATGGGCCACGACCTTGTTATGTCT
GTAGCATACCCGTTAAATTGACATCCAGCATCAAACATAACCCAGTCTCC
GGAGAGTAACATTTTATTCACATTCGTTGAAGTATGTGGTctgttttgaa
ttgattttccaGTGCTGACTACCGGACTAAAAGCAATATTTTCAGCTCCC
ATCAGTTTACACCGATATTCAAAATAAGACGAAATGTATTTAGACGATAT
CTGATCAAACTTCCAATTCatgatttctttaaaaatctctGAAACGACTT
TAGCAGCACGTCTCAAAATCCAGATTTCTTCTCTCGATTTTATCAGACGA
AGCATTTGTACAAAGTAACCTAGCTCTGATACTATCGTTTCCTTCACGTC
ACGGCTAGCGATTTCAAGGAGCGAATGCGTGTGGTTGTTGATTACAGGAT
GAAAAGATTTCTTGTACCAGAAACAGGTATGGTGGTATTTGTATCGGGCT
TTCAAGACGGTTTCTACATCTGTTAATGTGAAGAGTGTTACATTCTGCTG
AATGTTGTTAGAGGTTTTAACGCCCCTTGTGAAAACCAGGTTGCCGATTG
AATTTTTATGACGGTATTTCTCGAGAACAATAATTTCATTTGGCTCATTC
CGACCTGTTAGATAAAGTGCGTCTCTATCTTGGTAAAAGTCATAGTTTAT
GTCATGTGATCTCTTTTGATTTCGATTAGCCAATAGGAATACGACATTTT
GATCACATGATTTGTTTGAAGTAACGTGCTGTAAGAGATTGAAGAGATTT
TGTTGTCTCAGTTTAAATTCTCTTCGTTGAAACCCTAGCGGTTGAAAAGT
CATGTCCTGAAACCATCCTTGATGTACATTTGATGTATGACTTTCAAAAC
AACGCCGGAACGATCTtgtgatgaaaataataaacatGAACACAAAGATA
ATATGAAAATTCAGTTTGCTACGAATAATCGTGAACATAATCttcttcaa
aaacattattaggCTGCCAGATAAAAATTATAGTTTCTAAGCtataataa
aattattttgtttaaatCTAGCAAACTCGCGACGACTGGAAATAAATTAG
TCATACTT
Run BLAST on NCBI

protein sequence of TCONS_00057819-protein

>TCONS_00057819-protein ID=TCONS_00057819-protein|Name=TCONS_00057819-protein|organism=Clytia hemisphaerica|type=polypeptide|length=468bp
MFLKKIMFTIIRSKLNFHIIFVFMFIIFITRSFRRCFESHTSNVHQGWFQ
DMTFQPLGFQRREFKLRQQNLFNLLQHVTSNKSCDQNVVFLLANRNQKRS
HDINYDFYQDRDALYLTGRNEPNEIIVLEKYRHKNSIGNLVFTRGVKTSN
NIQQNVTLFTLTDVETVLKARYKYHHTCFWYKKSFHPVINNHTHSLLEIA
SRDVKETIVSELGYFVQMLRLIKSREEIWILRRAAKVVSEIFKEIMNWKF
DQISSKYISSYFEYRCKLMGAENIAFSPVVSTGKSIQNRPHTSTNVNKML
LSGDWVMFDAGCQFNGYATDITRSWPISGRLGPDPRSMIYRIVQSAHDEL
LMRCRVGVSLEMLHESMLNFLSEGLQSLSLILKNLSSNETRTHVRKFCPH
FVGHHIGLDVHDTPSLHSGIPLQVGMVFTIEPGIYISLGADFAPKEYHGI
SIRVENMILMTSKGAEVL
Run BLAST on NCBI

transcript from alignment at scaffold_298:361734..363241

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057819 ID=TCONS_00057819|Name=TCONS_00057819|organism=Clytia hemisphaerica|type=transcript|length=1508bp|location=Sequence derived from alignment at scaffold_298:361734..363241 (Clytia hemisphaerica)
AAGTATGACTAATTTATTTCCAGTCGTCGCGAGTTTGCTAGatttaaaca
aaataattttattataGCTTAGAAACTATAATTTTTATCTGGCAGcctaa
taatgtttttgaagaaGATTATGTTCACGATTATTCGTAGCAAACTGAAT
TTTCATATTATCTTTGTGTTCatgtttattattttcatcacaAGATCGTT
CCGGCGTTGTTTTGAAAGTCATACATCAAATGTACATCAAGGATGGTTTC
AGGACATGACTTTTCAACCGCTAGGGTTTCAACGAAGAGAATTTAAACTG
AGACAACAAAATCTCTTCAATCTCTTACAGCACGTTACTTCAAACAAATC
ATGTGATCAAAATGTCGTATTCCTATTGGCTAATCGAAATCAAAAGAGAT
CACATGACATAAACTATGACTTTTACCAAGATAGAGACGCACTTTATCTA
ACAGGTCGGAATGAGCCAAATGAAATTATTGTTCTCGAGAAATACCGTCA
TAAAAATTCAATCGGCAACCTGGTTTTCACAAGGGGCGTTAAAACCTCTA
ACAACATTCAGCAGAATGTAACACTCTTCACATTAACAGATGTAGAAACC
GTCTTGAAAGCCCGATACAAATACCACCATACCTGTTTCTGGTACAAGAA
ATCTTTTCATCCTGTAATCAACAACCACACGCATTCGCTCCTTGAAATCG
CTAGCCGTGACGTGAAGGAAACGATAGTATCAGAGCTAGGTTACTTTGTA
CAAATGCTTCGTCTGATAAAATCGAGAGAAGAAATCTGGATTTTGAGACG
TGCTGCTAAAGTCGTTTCagagatttttaaagaaatcatGAATTGGAAGT
TTGATCAGATATCGTCTAAATACATTTCGTCTTATTTTGAATATCGGTGT
AAACTGATGGGAGCTGAAAATATTGCTTTTAGTCCGGTAGTCAGCACtgg
aaaatcaattcaaaacagACCACATACTTCAACGAATGTGAATAAAATGT
TACTCTCCGGAGACTGGGTTATGTTTGATGCTGGATGTCAATTTAACGGG
TATGCTACAGACATAACAAGGTCGTGGCCCATCTCCGGCCGTTTGGGTCC
GGACCCGAGGTCAATGATTTATAGGATAGTTCAGAGCGCACATGATGAGT
TATTGATGAGATGTCGTGTTGGTGTTTCCCTTGAAATGCTTCATGAGAGC
ATGTTAAACTTTCTTAGCGAAGGGTTACAAAGTCTATCGCTGATTCTGAA
AAATCTTTCATCGAATGAGACACGGACTCATGTGCGGAAATTTTGTCCGC
ACTTTGTTGGACACCATATCGGATTAGACGTGCATGATACGCCTTCCCTA
CACAGTGGTATTCCGTTGCAAGTTGGAATGGTGTTTACGATTGAACCTGG
TATATATATCTCACTTGGTGCGGACTTTGCTCCAAAAGAATACCATGGTA
TCAGCATAAGGGTGGAAAACATGATTTTGATGACCAGTAAAGGTGCTGAA
GTATTGAC

Coding sequence (CDS) from alignment at scaffold_298:361734..363241

>TCONS_00057819 ID=TCONS_00057819|Name=TCONS_00057819|organism=Clytia hemisphaerica|type=CDS|length=1404bp|location=Sequence derived from alignment at scaffold_298:361734..363241 (Clytia hemisphaerica)
atgtttttgaagaaGATTATGTTCACGATTATTCGTAGCAAACTGAATTT
TCATATTATCTTTGTGTTCatgtttattattttcatcacaAGATCGTTCC
GGCGTTGTTTTGAAAGTCATACATCAAATGTACATCAAGGATGGTTTCAG
GACATGACTTTTCAACCGCTAGGGTTTCAACGAAGAGAATTTAAACTGAG
ACAACAAAATCTCTTCAATCTCTTACAGCACGTTACTTCAAACAAATCAT
GTGATCAAAATGTCGTATTCCTATTGGCTAATCGAAATCAAAAGAGATCA
CATGACATAAACTATGACTTTTACCAAGATAGAGACGCACTTTATCTAAC
AGGTCGGAATGAGCCAAATGAAATTATTGTTCTCGAGAAATACCGTCATA
AAAATTCAATCGGCAACCTGGTTTTCACAAGGGGCGTTAAAACCTCTAAC
AACATTCAGCAGAATGTAACACTCTTCACATTAACAGATGTAGAAACCGT
CTTGAAAGCCCGATACAAATACCACCATACCTGTTTCTGGTACAAGAAAT
CTTTTCATCCTGTAATCAACAACCACACGCATTCGCTCCTTGAAATCGCT
AGCCGTGACGTGAAGGAAACGATAGTATCAGAGCTAGGTTACTTTGTACA
AATGCTTCGTCTGATAAAATCGAGAGAAGAAATCTGGATTTTGAGACGTG
CTGCTAAAGTCGTTTCagagatttttaaagaaatcatGAATTGGAAGTTT
GATCAGATATCGTCTAAATACATTTCGTCTTATTTTGAATATCGGTGTAA
ACTGATGGGAGCTGAAAATATTGCTTTTAGTCCGGTAGTCAGCACtggaa
aatcaattcaaaacagACCACATACTTCAACGAATGTGAATAAAATGTTA
CTCTCCGGAGACTGGGTTATGTTTGATGCTGGATGTCAATTTAACGGGTA
TGCTACAGACATAACAAGGTCGTGGCCCATCTCCGGCCGTTTGGGTCCGG
ACCCGAGGTCAATGATTTATAGGATAGTTCAGAGCGCACATGATGAGTTA
TTGATGAGATGTCGTGTTGGTGTTTCCCTTGAAATGCTTCATGAGAGCAT
GTTAAACTTTCTTAGCGAAGGGTTACAAAGTCTATCGCTGATTCTGAAAA
ATCTTTCATCGAATGAGACACGGACTCATGTGCGGAAATTTTGTCCGCAC
TTTGTTGGACACCATATCGGATTAGACGTGCATGATACGCCTTCCCTACA
CAGTGGTATTCCGTTGCAAGTTGGAATGGTGTTTACGATTGAACCTGGTA
TATATATCTCACTTGGTGCGGACTTTGCTCCAAAAGAATACCATGGTATC
AGCATAAGGGTGGAAAACATGATTTTGATGACCAGTAAAGGTGCTGAAGT
ATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036449XLOC_036449Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057819-proteinTCONS_00057819-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057819-exon-scaffold_298-1491911889:361734..363241TCONS_00057819-exon-scaffold_298-1491911889:361734..363241Clytia hemisphaericaexon
TCONS_00057819-exon-scaffold_298-1510915933:361734..363241TCONS_00057819-exon-scaffold_298-1510915933:361734..363241Clytia hemisphaericaexon
TCONS_00057819-exon-scaffold_298-1575043694:361734..363241TCONS_00057819-exon-scaffold_298-1575043694:361734..363241Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_298supercontigscaffold_298:361734..363241 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.200066	0.133165	0.123694	0.201526	1.19691	1.33098	1.82338	1.7241	0.497879	0.303583	1.08332	0.683897	0.846704	0.562047	1.034	1.41328	1.09708	1.27785	0	0.0454033	0.405874	0.474117	0.504281	0.376214	0.290065	0.630158	0.0743475	0	0.113571	0.0822243
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR029149Creatin/AminoP/Spt16_NTD
IPR007865Aminopep_P_N
IPR000994Pept_M24
IPR028980Creatinase/Aminopeptidase_P_N
Vocabulary: Molecular Function
TermDefinition
GO:0030145manganese ion binding
GO:0004177aminopeptidase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0004177 aminopeptidase activity
molecular_function GO:0030145 manganese ion binding
Blast
[Close]
BLAST of TCONS_00057819 vs. Swiss-Prot (Human)
Match: XPP3 (Probable Xaa-Pro aminopeptidase 3 OS=Homo sapiens GN=XPNPEP3 PE=1 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.004e-62
Identity = 136/432 (31.48%), Postives = 227/432 (52.55%), Query Frame = -1 
Query:    3 GFQRREFKLRQQNLFNLLQHVTSNKSCDQNVVFLLANRNQKRSHDINYDFYQDRDALYLTGRNEPNEIIVLEKYRHKN--SIGNLVFTR----------GVKTSNNIQQNVT----LFTLTDVETVLKARYKYHHTCFWY---KKSFHPVINNHTHSLLEIASRDVKETIVSELGYFVQMLRLIKSREEIWILRRAAKVVSEIFKEIMNWKFDQISSKYISSYFEYRCKLMGAENIAFSPVVSTGKSIQNRPHTSTNV--NKMLLSGDWVMFDAGCQFNGYATDITRSWPISGRLGPDPRSMIYRIVQSAHDELLMRCRVGVSLEMLHESMLNFLSEGXXXXXXXXXXXXSNETRTHVRKFCPHFVGHHIGLDVHDTPSLHSGIPLQVGMVFTIEPGIYISLGADFAPKEYHGISIRVENMILMTSKGAEVL 1235
            G  + E+ LR+  L +L+Q     +S     V +L+N     S+DI Y F+QD + LYL G  EP+ I+VL+    K   S   ++F            G ++  +    +T     +TL + + +L  + K      WY   + S   + +++   L E  ++   +  V  +   +Q LRLIKS  EI  ++ A K+ S+ F E M      +   ++ + FE+ C+  GA+ +A+ PVV+ G    NR +T   V  N+++  G+ V+ D GC+ + Y +DITR+WP++GR    P++ +Y  V     + L  C  G SLE ++  ML  + + L+ L ++     +N  +   RK+CPH VGH++G+DVHDTP +   +PLQ GMV TIEPGIYI      AP+++ G+ +R+E+ +++T     +L
Sbjct:   66 GLSQVEYALRRHKLMSLIQKEAQGQSGTDQTVVVLSNPTYYMSNDIPYTFHQDNNFLYLCGFQEPDSILVLQSLPGKQLPSHKAILFVPRRDPSRELWDGPRSGTDGAIALTGVDEAYTLEEFQHLL-PKMKAETNMVWYDWMRPSHAQLHSDYMQPLTEAKAKSKNK--VRGVQQLIQRLRLIKSPAEIERMQIAGKLTSQAFIETMFTSKAPVEEAFLYAKFEFECRARGADILAYPPVVAGG----NRSNTLHYVKNNQLIKDGEMVLLDGGCESSCYVSDITRTWPVNGRFT-APQAELYEAVLEIQRDCLALCFPGTSLENIYSMMLTLIGQKLKDLGIMKNIKENNAFKA-ARKYCPHHVGHYLGMDVHDTPDMPRSLPLQPGMVITIEPGIYIPEDDKDAPEKFRGLGVRIEDDVVVTQDSPLIL 488
The following BLAST results are available for this feature:
BLAST of TCONS_00057819 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
XPP31.004e-6231.48Probable Xaa-Pro aminopeptidase 3 OS=Homo sapiens ... [more]
back to top