TCONS_00057817 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057817
Unique NameTCONS_00057817
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length372

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057817 ID=TCONS_00057817|Name=TCONS_00057817|organism=Clytia hemisphaerica|type=transcript|length=372bp
GGACCTTTCTcgcaattttatttcataatacTGCGCATGCGTAATTTTCA
ACCGGTAGTGGATATTTAATGGCTAGAACCAATTCAAATAATCCGGGAGG
GGTGGACTCACtttttcggtcggggttgtggaggGCCTAAACCATTTTTT
TGATTAGACGAAAATGTGACGTTCTTTAGTGACGTATTGTGACGTTCTTT
AATGACGTATTTGTCGCTTATTGGGTCACTACCAGTTTGGGTCAGGGTTG
GCCTCGAGAGTCACAGCTGAGTGCCCTGGACCCATTTAGAGTCACTTTAG
GGTCAATTGGACCCActgacaaatttgaaaaacttcgtTTTAGTAAGATT
TTAGATTGCTGCGAATAAGGTC
Run BLAST on NCBI

transcript from alignment at scaffold_298:304005..304376

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057817 ID=TCONS_00057817|Name=TCONS_00057817|organism=Clytia hemisphaerica|type=transcript|length=372bp|location=Sequence derived from alignment at scaffold_298:304005..304376 (Clytia hemisphaerica)
GACCTTATTCGCAGCAATCTAAAATCTTACTAAAacgaagtttttcaaat
ttgtcagTGGGTCCAATTGACCCTAAAGTGACTCTAAATGGGTCCAGGGC
ACTCAGCTGTGACTCTCGAGGCCAACCCTGACCCAAACTGGTAGTGACCC
AATAAGCGACAAATACGTCATTAAAGAACGTCACAATACGTCACTAAAGA
ACGTCACATTTTCGTCTAATCAAAAAAATGGTTTAGGCcctccacaaccc
cgaccgaaaaaGTGAGTCCACCCCTCCCGGATTATTTGAATTGGTTCTAG
CCATTAAATATCCACTACCGGTTGAAAATTACGCATGCGCAgtattatga
aataaaattgcgAGAAAGGTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036447XLOC_036447Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057817-exon-scaffold_298-1491911889:304005..304376TCONS_00057817-exon-scaffold_298-1491911889:304005..304376Clytia hemisphaericaexon
TCONS_00057817-exon-scaffold_298-1510915933:304005..304376TCONS_00057817-exon-scaffold_298-1510915933:304005..304376Clytia hemisphaericaexon
TCONS_00057817-exon-scaffold_298-1575043694:304005..304376TCONS_00057817-exon-scaffold_298-1575043694:304005..304376Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_298supercontigscaffold_298:304005..304376 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.178864	0	1.16622	2.56446	0	0.292907	0	0.286922	0.446611	0	0.130654	0.261246	0.943779	0.551642	0.674832	0.419703	2.40136	0.853689	0.351646	0.543329	0.971773	0	0.117722	0.500962	0	1.02238	3.03307	5.21429	1.11323	0.464089
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057817 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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