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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057815 ID=TCONS_00057815|Name=TCONS_00057815|organism=Clytia hemisphaerica|type=transcript|length=2858bp
TGGAGGGGGAGTGCGGGGGTGTGGTCTTGTAGTAAGCGACATTTTGACGT
TAGTCATGGGAAAGAATTGATATGTGAGTCGCTCCTTATGTATCTTCCTA
TGTATGtatcttaactttttttcagctttctaaaaatgaaaaagaaattt
taaagaaatgatGACAACgaaacatttactttcgatCCTGATTATTTTGA
TGACCATCCACAATGCATTTCCCATGATGCATCCTCTTAATCGTGAATAC
ACTATCGTTAAACTCATCACAAGATGTGACGGACGAAATATAATGGGCAa
cgaaatttcaaaacagattAACAAGACTATTGGACACGTTTTTTCGTTTG
TTTACGAATTTATTGAGTTTGATATTTGTGATGAAAAGCCAGAGGAAGGA
CAATTTCAGTTGACCAGACTTTTATCATCTCTTCTTCTCGAACCAAGATG
GCGACGCAAAATCGAAACCAATGATACGTATTATTTATCACCAAAGTGGG
ACCAAATTACCAGTTCAGACGAATATCGCATTTTAGGCATTGTAACATAC
TTAAGTCACACGCTATTACAGAGAACGAttgagattttgaaattttcaaa
aatcatgatcTACCCAATGACGAGACAAAAAGAGTCATCGGAGTGGTTCG
AGAGACAGGAAACCGTTCTACCGGCAATGCAAAGAGAACAGAGTACAGAA
TCCATCataaaaacattacttaaaAAACATTCACAATGGAAAAACATATT
AATTATTGAGCTAATTACTAAAAAACAACCACAACCTTCCCTACGTATCG
AAATGATTCAACGTAGATTTCAATCACGACGTAACATACGTTATTGGGCG
ACACCAGACTTTATGAAGAAGAAAGATACCATCTTCCAAAAACTGAAGAA
AGAATCTAGCGACCAACTCGTAATAGTGGTTGGTGGGGCAGCGGGTATCT
TTATGGCTTTGGCACAGAGGGAACATAACATTACTAACCGAAATTGGATT
CTTTTTGCTAATCTAAACAGACAAAGTGGTCTTCCCGACTATGTCTGTTT
TATTGGTGTTCTTGGGCATTTGGACGTAACCACGTTACCACTCTACCACA
ATAAAACATTTTGTGCTCAGAAAAGAACTTGGAGGCTGACCCAAATCAAT
AAAAGTCGTCATAAAAAGCAAATAAACTTAACGTGCGGGATGACAACCCA
AAAATTAGAGAAAACCATAGAAATTCAAATGTCACAGAGCATAATACACA
TGCGAGgtgtttttcaagaaaaaaatagttACCAAATTGAACAGTTAAGA
AATAAAACACTCAGTACTGTCGATCGAATTGATGATATTAATTTCGGACG
acccaaaaaacgtaaaatgaaattcaacataaacaccACTATAGAGTTTT
GCGAGCATGTGGAAGTACGTCATATAAATGGCTCATCAGATTTCGTAAAA
CAATTTGACTATACATGTTTGAAATGTCAAAATACATCATATCTGGATAA
AGGATCTTGCCATATGTGTGTTGGTGGTGAAATACCCAATCACAACCAAA
CAGCATGTTATTACCCCTTCGAAGAAAGCAACAATGACATTATTTATCAC
ATCACAACAGTTTTTGACACGCTTGGTATTATCCTCTGTTTATTCATATT
AACAGTATTCATCAAATATCGTAATACACCGGTCGTGCGTTCAAGCCATT
TCACTCTATCCATGCTCCAAGTTATTTGCTGTCTTAGTCTTNAGTCGTGC
GTTCAAGCCACTTCACCCTATCCATGCTCCAAGTTATTTGCTGTCTTAGT
CTTTTCGTTATCTTCATGAGTTCAGTTTCGTTAGAACCTGACGTTTTCAG
ATGTACGTCACGTCAGTACGGCGTCAGTTTGTTACTGATCATTGTTAACG
CAATCGTAGTCTGCAAATCAGAAATGATAATCACGATCTGCTCAATGAGG
ACAGTTCTTTGTCGGAAAACGAAACGCGATCTCTTCCGAAAGCAAGCTTT
GATTTTCATCCTTATCGTTGTAATCGATCTTTCAATCATGGGATCCAGTT
TCCCGCATCCCTCGCGACCGATCGTAAACATTAAGCGAACAGATGCGTAC
GGCAATAAATATCTGACCTTAGCGTGTGATCTCGGAGAGAAGAGCTATCT
ACAGGTCGCATATTGTATATTCTTGTTAATGCTATCACTAGGACAAGCAA
TGCGCGGACATGGTCGATTACCGGATGCCTATAACGAAGGGAATGCTATC
ATAGCATCATCGGCAACCTCAGCCTGTTGTCTACTTTTTCTTCTTATATA
CGGAAGCATGAGTAAAGTCTCCATCAAGCAGAACGATTTCGTACCCATCA
TTTGTATAACATTATCCATTAATCTCATCACCTTAATACTTTGTTTATAC
TCCAGTAAAATTTATATAATcatctttcaaaagaaaaggaACACAAAATC
TTTCGTTAAAACTTTTAATAAACAAATGGAATATGTGGCGAAACATTGCG
ACTCCAGACGACGCAAGGTGACGCAAATGAGCCGGATGACGAGTGTGACT
TTCGTACAAAGCGAAACGCTGATGAGTTCTGAACAATATGAGAGTGATTG
CGAGCCGTTTGATCTGTAACGTTCTTAGAATGCTTGGAAAATTTTACCAA
CTATTTATTGATAtagaataatttttattttagtactcTTCTACTAAAGT
CAAATTAAATTGGAAATTGTAAaaactagccgtcccggcgtcgtccaAGA
CAAATCTTTACCATGATGattaagatatttttgagaaattaaatgtattt
tttaattttttacaattcggtaaaacccgttgtccgggggccaaaagtca
cttttccC Run BLAST on NCBI protein sequence of TCONS_00057815-protein >TCONS_00057815-protein ID=TCONS_00057815-protein|Name=TCONS_00057815-protein|organism=Clytia hemisphaerica|type=polypeptide|length=553bp
MMTTKHLLSILIILMTIHNAFPMMHPLNREYTIVKLITRCDGRNIMGNEI
SKQINKTIGHVFSFVYEFIEFDICDEKPEEGQFQLTRLLSSLLLEPRWRR
KIETNDTYYLSPKWDQITSSDEYRILGIVTYLSHTLLQRTIEILKFSKIM
IYPMTRQKESSEWFERQETVLPAMQREQSTESIIKTLLKKHSQWKNILII
ELITKKQPQPSLRIEMIQRRFQSRRNIRYWATPDFMKKKDTIFQKLKKES
SDQLVIVVGGAAGIFMALAQREHNITNRNWILFANLNRQSGLPDYVCFIG
VLGHLDVTTLPLYHNKTFCAQKRTWRLTQINKSRHKKQINLTCGMTTQKL
EKTIEIQMSQSIIHMRGVFQEKNSYQIEQLRNKTLSTVDRIDDINFGRPK
KRKMKFNINTTIEFCEHVEVRHINGSSDFVKQFDYTCLKCQNTSYLDKGS
CHMCVGGEIPNHNQTACYYPFEESNNDIIYHITTVFDTLGIILCLFILTV
FIKYRNTPVVRSSHFTLSMLQVICCLSLXSCVQATSPYPCSKLFAVLVFS
LSS Run BLAST on NCBI transcript from alignment at scaffold_298:255595..258452 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057815 ID=TCONS_00057815|Name=TCONS_00057815|organism=Clytia hemisphaerica|type=transcript|length=2858bp|location=Sequence derived from alignment at scaffold_298:255595..258452 (Clytia hemisphaerica)
Gggaaaagtgacttttggcccccggacaacgggttttaccgaattgtaaa
aaattaaaaaatacatttaatttctcaaaaatatcttaatCATCATGGTA
AAGATTTGTCTtggacgacgccgggacggctagtttTTACAATTTCCAAT
TTAATTTGACTTTAGTAGAAgagtactaaaataaaaattattctaTATCA
ATAAATAGTTGGTAAAATTTTCCAAGCATTCTAAGAACGTTACAGATCAA
ACGGCTCGCAATCACTCTCATATTGTTCAGAACTCATCAGCGTTTCGCTT
TGTACGAAAGTCACACTCGTCATCCGGCTCATTTGCGTCACCTTGCGTCG
TCTGGAGTCGCAATGTTTCGCCACATATTCCATTTGTTTATTAAAAGTTT
TAACGAAAGATTTTGTGTtccttttcttttgaaagatgATTATATAAATT
TTACTGGAGTATAAACAAAGTATTAAGGTGATGAGATTAATGGATAATGT
TATACAAATGATGGGTACGAAATCGTTCTGCTTGATGGAGACTTTACTCA
TGCTTCCGTATATAAGAAGAAAAAGTAGACAACAGGCTGAGGTTGCCGAT
GATGCTATGATAGCATTCCCTTCGTTATAGGCATCCGGTAATCGACCATG
TCCGCGCATTGCTTGTCCTAGTGATAGCATTAACAAGAATATACAATATG
CGACCTGTAGATAGCTCTTCTCTCCGAGATCACACGCTAAGGTCAGATAT
TTATTGCCGTACGCATCTGTTCGCTTAATGTTTACGATCGGTCGCGAGGG
ATGCGGGAAACTGGATCCCATGATTGAAAGATCGATTACAACGATAAGGA
TGAAAATCAAAGCTTGCTTTCGGAAGAGATCGCGTTTCGTTTTCCGACAA
AGAACTGTCCTCATTGAGCAGATCGTGATTATCATTTCTGATTTGCAGAC
TACGATTGCGTTAACAATGATCAGTAACAAACTGACGCCGTACTGACGTG
ACGTACATCTGAAAACGTCAGGTTCTAACGAAACTGAACTCATGAAGATA
ACGAAAAGACTAAGACAGCAAATAACTTGGAGCATGGATAGGGTGAAGTG
GCTTGAACGCACGACTNAAGACTAAGACAGCAAATAACTTGGAGCATGGA
TAGAGTGAAATGGCTTGAACGCACGACCGGTGTATTACGATATTTGATGA
ATACTGTTAATATGAATAAACAGAGGATAATACCAAGCGTGTCAAAAACT
GTTGTGATGTGATAAATAATGTCATTGTTGCTTTCTTCGAAGGGGTAATA
ACATGCTGTTTGGTTGTGATTGGGTATTTCACCACCAACACACATATGGC
AAGATCCTTTATCCAGATATGATGTATTTTGACATTTCAAACATGTATAG
TCAAATTGTTTTACGAAATCTGATGAGCCATTTATATGACGTACTTCCAC
ATGCTCGCAAAACTCTATAGTggtgtttatgttgaatttcattttacgtt
ttttgggtCGTCCGAAATTAATATCATCAATTCGATCGACAGTACTGAGT
GTTTTATTTCTTAACTGTTCAATTTGGTaactatttttttcttgaaaaac
acCTCGCATGTGTATTATGCTCTGTGACATTTGAATTTCTATGGTTTTCT
CTAATTTTTGGGTTGTCATCCCGCACGTTAAGTTTATTTGCTTTTTATGA
CGACTTTTATTGATTTGGGTCAGCCTCCAAGTTCTTTTCTGAGCACAAAA
TGTTTTATTGTGGTAGAGTGGTAACGTGGTTACGTCCAAATGCCCAAGAA
CACCAATAAAACAGACATAGTCGGGAAGACCACTTTGTCTGTTTAGATTA
GCAAAAAGAATCCAATTTCGGTTAGTAATGTTATGTTCCCTCTGTGCCAA
AGCCATAAAGATACCCGCTGCCCCACCAACCACTATTACGAGTTGGTCGC
TAGATTCTTTCTTCAGTTTTTGGAAGATGGTATCTTTCTTCTTCATAAAG
TCTGGTGTCGCCCAATAACGTATGTTACGTCGTGATTGAAATCTACGTTG
AATCATTTCGATACGTAGGGAAGGTTGTGGTTGTTTTTTAGTAATTAGCT
CAATAATTAATATGTTTTTCCATTGTGAATGTTTtttaagtaatgttttt
atGATGGATTCTGTACTCTGTTCTCTTTGCATTGCCGGTAGAACGGTTTC
CTGTCTCTCGAACCACTCCGATGACTCTTTTTGTCTCGTCATTGGGTAga
tcatgatttttgaaaatttcaaaatctcaaTCGTTCTCTGTAATAGCGTG
TGACTTAAGTATGTTACAATGCCTAAAATGCGATATTCGTCTGAACTGGT
AATTTGGTCCCACTTTGGTGATAAATAATACGTATCATTGGTTTCGATTT
TGCGTCGCCATCTTGGTTCGAGAAGAAGAGATGATAAAAGTCTGGTCAAC
TGAAATTGTCCTTCCTCTGGCTTTTCATCACAAATATCAAACTCAATAAA
TTCGTAAACAAACGAAAAAACGTGTCCAATAGTCTTGTTaatctgttttg
aaatttcgtTGCCCATTATATTTCGTCCGTCACATCTTGTGATGAGTTTA
ACGATAGTGTATTCACGATTAAGAGGATGCATCATGGGAAATGCATTGTG
GATGGTCATCAAAATAATCAGGatcgaaagtaaatgtttcGTTGTCatca
tttctttaaaatttctttttcatttttagaaagctgaaaaaaagttaaga
taCATACATAGGAAGATACATAAGGAGCGACTCACATATCAATTCTTTCC
CATGACTAACGTCAAAATGTCGCTTACTACAAGACCACACCCCCGCACTC
CCCCTCCA Coding sequence (CDS) from alignment at scaffold_298:255595..258452 >TCONS_00057815 ID=TCONS_00057815|Name=TCONS_00057815|organism=Clytia hemisphaerica|type=CDS|length=1662bp|location=Sequence derived from alignment at scaffold_298:255595..258452 (Clytia hemisphaerica)
TCATGAAGATAACGAAAAGACTAAGACAGCAAATAACTTGGAGCATGGAT
AGGGTGAAGTGGCTTGAACGCACGACTNAAGACTAAGACAGCAAATAACT
TGGAGCATGGATAGAGTGAAATGGCTTGAACGCACGACCGGTGTATTACG
ATATTTGATGAATACTGTTAATATGAATAAACAGAGGATAATACCAAGCG
TGTCAAAAACTGTTGTGATGTGATAAATAATGTCATTGTTGCTTTCTTCG
AAGGGGTAATAACATGCTGTTTGGTTGTGATTGGGTATTTCACCACCAAC
ACACATATGGCAAGATCCTTTATCCAGATATGATGTATTTTGACATTTCA
AACATGTATAGTCAAATTGTTTTACGAAATCTGATGAGCCATTTATATGA
CGTACTTCCACATGCTCGCAAAACTCTATAGTggtgtttatgttgaattt
cattttacgttttttgggtCGTCCGAAATTAATATCATCAATTCGATCGA
CAGTACTGAGTGTTTTATTTCTTAACTGTTCAATTTGGTaactatttttt
tcttgaaaaacacCTCGCATGTGTATTATGCTCTGTGACATTTGAATTTC
TATGGTTTTCTCTAATTTTTGGGTTGTCATCCCGCACGTTAAGTTTATTT
GCTTTTTATGACGACTTTTATTGATTTGGGTCAGCCTCCAAGTTCTTTTC
TGAGCACAAAATGTTTTATTGTGGTAGAGTGGTAACGTGGTTACGTCCAA
ATGCCCAAGAACACCAATAAAACAGACATAGTCGGGAAGACCACTTTGTC
TGTTTAGATTAGCAAAAAGAATCCAATTTCGGTTAGTAATGTTATGTTCC
CTCTGTGCCAAAGCCATAAAGATACCCGCTGCCCCACCAACCACTATTAC
GAGTTGGTCGCTAGATTCTTTCTTCAGTTTTTGGAAGATGGTATCTTTCT
TCTTCATAAAGTCTGGTGTCGCCCAATAACGTATGTTACGTCGTGATTGA
AATCTACGTTGAATCATTTCGATACGTAGGGAAGGTTGTGGTTGTTTTTT
AGTAATTAGCTCAATAATTAATATGTTTTTCCATTGTGAATGTTTtttaa
gtaatgtttttatGATGGATTCTGTACTCTGTTCTCTTTGCATTGCCGGT
AGAACGGTTTCCTGTCTCTCGAACCACTCCGATGACTCTTTTTGTCTCGT
CATTGGGTAgatcatgatttttgaaaatttcaaaatctcaaTCGTTCTCT
GTAATAGCGTGTGACTTAAGTATGTTACAATGCCTAAAATGCGATATTCG
TCTGAACTGGTAATTTGGTCCCACTTTGGTGATAAATAATACGTATCATT
GGTTTCGATTTTGCGTCGCCATCTTGGTTCGAGAAGAAGAGATGATAAAA
GTCTGGTCAACTGAAATTGTCCTTCCTCTGGCTTTTCATCACAAATATCA
AACTCAATAAATTCGTAAACAAACGAAAAAACGTGTCCAATAGTCTTGTT
aatctgttttgaaatttcgtTGCCCATTATATTTCGTCCGTCACATCTTG
TGATGAGTTTAACGATAGTGTATTCACGATTAAGAGGATGCATCATGGGA
AATGCATTGTGGATGGTCATCAAAATAATCAGGatcgaaagtaaatgttt
cGTTGTCatcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057815-exon-scaffold_298-1491911889:255595..258452 | TCONS_00057815-exon-scaffold_298-1491911889:255595..258452 | Clytia hemisphaerica | exon |
| TCONS_00057815-exon-scaffold_298-1510915933:255595..258452 | TCONS_00057815-exon-scaffold_298-1510915933:255595..258452 | Clytia hemisphaerica | exon |
| TCONS_00057815-exon-scaffold_298-1575043694:255595..258452 | TCONS_00057815-exon-scaffold_298-1575043694:255595..258452 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_298 | supercontig | scaffold_298:255595..258452 . |
Blast
The following BLAST results are available for this feature:
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