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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057812 ID=TCONS_00057812|Name=TCONS_00057812|organism=Clytia hemisphaerica|type=transcript|length=1309bp
tATGAATTGACCTATTTTGACATACATATTATTTCCAAAAGGAAAGCTGC
TTTAAGACAGTCATCAGACTTTAGTATAAAAGCTAGCAGGTTTAGATTTA
ACTTCGTCAcattcaaatcaatcaaaatggCAGACTCACAGTGGGAGAAA
GAACTTCGACAAAATCTATTGGATCTGTTGACAGCTTCGTTTCGAGATAA
TGATTCCCTGAGCGAAGAATTAAAAAAGTACGCCATCAAAAATCATTTGC
TTGATGACATCACAAACTTCATCCAAAATGAACACCGCTTATTTGATCAG
AAGATTCGATTATGCAGAGAGAAAGATTTGCAgacaaaaatcaatgaaat
tatCGAACggaaaaattatttctacatTGGGTCAATGAAAAATATCACCT
ACAACTTATGGCAAATTCAACCGTCAGccgaaaaaagtaaaaaatggaAA
GCCTACACATCTAAACATCTTCAGGAAGGTGAGAAACTTCAAACCTTCTA
TTCCCACGTGACCGAAAATGCTGAGAAGCGAGGCAGGAAAATGATCGAGA
CAAATAAGGATAGCATGTTTTGTCTCAACGATGAAGAGCTTGAAGAAAAT
CTCAATGGAGAAGAGAAAGGAGTTATCTTTGTTTTGGAATATTCCAAAAT
ATCTTACAAGATTTTGGTGGCTGGTGATTGCCTTCTCAATGGTATCAAGT
CACGAAAATTACACGAAATTCATAAAAGTGAAGTCGTGGTCTACCCAAGA
GCAACAACGGGGAAGTTGTTCAAAAATTACACAAAAGGGATCTTACGGTC
TCCTCCTGACGTGTTGATTCTACATTTTGGGACGTATGATCTCACCCTGG
GTGGTGAAGCAAAAGACAccattcaaaacattcgaaattttaTTCGACGC
ACCAAGGAGAAGAGCCCACGAATCACAATCGCACTCTCCTCCATCTTAGT
TCGTGTAGATCGTAAAGGCATGCGCAGTGCAATAAAACATTTGAACAGCC
AATTAAAAAAACTCTGCGCTGAAGAGAGTGTTGATTTCATAAATAATGAA
AATGTGACGGAACCGATGCTTTGTCAGAAAATGTTGCTCACTTTGAACGC
AGAAGGAAAGAACACACtggctcaaaatatttcaacataCATTAATGAAC
TATTAtaagtttttgaattgttaactttttcccgACTGAAGTTCTACCCA
TGTGTCCAGGGTTGAGTTGTTTAGCATTTGGAAAGAACACACTGGCTCGA
AATATTTCAACATATATCAATGAACTATTATAGTTTTtgaattgttaact
ttttccccA Run BLAST on NCBI protein sequence of TCONS_00057812-protein >TCONS_00057812-protein ID=TCONS_00057812-protein|Name=TCONS_00057812-protein|organism=Clytia hemisphaerica|type=polypeptide|length=385bp
YELTYFDIHIISKRKAALRQSSDFSIKASRFRFNFVTFKSIKMADSQWEK
ELRQNLLDLLTASFRDNDSLSEELKKYAIKNHLLDDITNFIQNEHRLFDQ
KIRLCREKDLQTKINEIIERKNYFYIGSMKNITYNLWQIQPSAEKSKKWK
AYTSKHLQEGEKLQTFYSHVTENAEKRGRKMIETNKDSMFCLNDEELEEN
LNGEEKGVIFVLEYSKISYKILVAGDCLLNGIKSRKLHEIHKSEVVVYPR
ATTGKLFKNYTKGILRSPPDVLILHFGTYDLTLGGEAKDTIQNIRNFIRR
TKEKSPRITIALSSILVRVDRKGMRSAIKHLNSQLKKLCAEESVDFINNE
NVTEPMLCQKMLLTLNAEGKNTLAQNISTYINELL Run BLAST on NCBI transcript from alignment at scaffold_298:204272..205580 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057812 ID=TCONS_00057812|Name=TCONS_00057812|organism=Clytia hemisphaerica|type=transcript|length=1309bp|location=Sequence derived from alignment at scaffold_298:204272..205580 (Clytia hemisphaerica)
TggggaaaaagttaacaattcaAAAACTATAATAGTTCATTGATATATGT
TGAAATATTTCGAGCCAGTGTGTTCTTTCCAAATGCTAAACAACTCAACC
CTGGACACATGGGTAGAACTTCAGTcgggaaaaagttaacaattcaaaaa
cttaTAATAGTTCATTAATGtatgttgaaatattttgagccaGTGTGTTC
TTTCCTTCTGCGTTCAAAGTGAGCAACATTTTCTGACAAAGCATCGGTTC
CGTCACATTTTCATTATTTATGAAATCAACACTCTCTTCAGCGCAGAGTT
TTTTTAATTGGCTGTTCAAATGTTTTATTGCACTGCGCATGCCTTTACGA
TCTACACGAACTAAGATGGAGGAGAGTGCGATTGTGATTCGTGGGCTCTT
CTCCTTGGTGCGTCGAAtaaaatttcgaatgttttgaatggTGTCTTTTG
CTTCACCACCCAGGGTGAGATCATACGTCCCAAAATGTAGAATCAACACG
TCAGGAGGAGACCGTAAGATCCCTTTTGTGTAATTTTTGAACAACTTCCC
CGTTGTTGCTCTTGGGTAGACCACGACTTCACTTTTATGAATTTCGTGTA
ATTTTCGTGACTTGATACCATTGAGAAGGCAATCACCAGCCACCAAAATC
TTGTAAGATATTTTGGAATATTCCAAAACAAAGATAACTCCTTTCTCTTC
TCCATTGAGATTTTCTTCAAGCTCTTCATCGTTGAGACAAAACATGCTAT
CCTTATTTGTCTCGATCATTTTCCTGCCTCGCTTCTCAGCATTTTCGGTC
ACGTGGGAATAGAAGGTTTGAAGTTTCTCACCTTCCTGAAGATGTTTAGA
TGTGTAGGCTTtccattttttacttttttcggCTGACGGTTGAATTTGCC
ATAAGTTGTAGGTGATATTTTTCATTGACCCAatgtagaaataatttttc
cGTTCGataatttcattgatttttgtcTGCAAATCTTTCTCTCTGCATAA
TCGAATCTTCTGATCAAATAAGCGGTGTTCATTTTGGATGAAGTTTGTGA
TGTCATCAAGCAAATGATTTTTGATGGCGTACTTTTTTAATTCTTCGCTC
AGGGAATCATTATCTCGAAACGAAGCTGTCAACAGATCCAATAGATTTTG
TCGAAGTTCTTTCTCCCACTGTGAGTCTGccattttgattgatttgaatg
TGACGAAGTTAAATCTAAACCTGCTAGCTTTTATACTAAAGTCTGATGAC
TGTCTTAAAGCAGCTTTCCTTTTGGAAATAATATGTATGTCAAAATAGGT
CAATTCATa Coding sequence (CDS) from alignment at scaffold_298:204272..205580 >TCONS_00057812 ID=TCONS_00057812|Name=TCONS_00057812|organism=Clytia hemisphaerica|type=CDS|length=1158bp|location=Sequence derived from alignment at scaffold_298:204272..205580 (Clytia hemisphaerica)
ttaTAATAGTTCATTAATGtatgttgaaatattttgagccaGTGTGTTCT
TTCCTTCTGCGTTCAAAGTGAGCAACATTTTCTGACAAAGCATCGGTTCC
GTCACATTTTCATTATTTATGAAATCAACACTCTCTTCAGCGCAGAGTTT
TTTTAATTGGCTGTTCAAATGTTTTATTGCACTGCGCATGCCTTTACGAT
CTACACGAACTAAGATGGAGGAGAGTGCGATTGTGATTCGTGGGCTCTTC
TCCTTGGTGCGTCGAAtaaaatttcgaatgttttgaatggTGTCTTTTGC
TTCACCACCCAGGGTGAGATCATACGTCCCAAAATGTAGAATCAACACGT
CAGGAGGAGACCGTAAGATCCCTTTTGTGTAATTTTTGAACAACTTCCCC
GTTGTTGCTCTTGGGTAGACCACGACTTCACTTTTATGAATTTCGTGTAA
TTTTCGTGACTTGATACCATTGAGAAGGCAATCACCAGCCACCAAAATCT
TGTAAGATATTTTGGAATATTCCAAAACAAAGATAACTCCTTTCTCTTCT
CCATTGAGATTTTCTTCAAGCTCTTCATCGTTGAGACAAAACATGCTATC
CTTATTTGTCTCGATCATTTTCCTGCCTCGCTTCTCAGCATTTTCGGTCA
CGTGGGAATAGAAGGTTTGAAGTTTCTCACCTTCCTGAAGATGTTTAGAT
GTGTAGGCTTtccattttttacttttttcggCTGACGGTTGAATTTGCCA
TAAGTTGTAGGTGATATTTTTCATTGACCCAatgtagaaataatttttcc
GTTCGataatttcattgatttttgtcTGCAAATCTTTCTCTCTGCATAAT
CGAATCTTCTGATCAAATAAGCGGTGTTCATTTTGGATGAAGTTTGTGAT
GTCATCAAGCAAATGATTTTTGATGGCGTACTTTTTTAATTCTTCGCTCA
GGGAATCATTATCTCGAAACGAAGCTGTCAACAGATCCAATAGATTTTGT
CGAAGTTCTTTCTCCCACTGTGAGTCTGccattttgattgatttgaatgT
GACGAAGTTAAATCTAAACCTGCTAGCTTTTATACTAAAGTCTGATGACT
GTCTTAAAGCAGCTTTCCTTTTGGAAATAATATGTATGTCAAAATAGGTC
AATTCATa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057812-exon-scaffold_298-1491911889:204272..205580 | TCONS_00057812-exon-scaffold_298-1491911889:204272..205580 | Clytia hemisphaerica | exon |
| TCONS_00057812-exon-scaffold_298-1510915933:204272..205580 | TCONS_00057812-exon-scaffold_298-1510915933:204272..205580 | Clytia hemisphaerica | exon |
| TCONS_00057812-exon-scaffold_298-1575043694:204272..205580 | TCONS_00057812-exon-scaffold_298-1575043694:204272..205580 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_298 | supercontig | scaffold_298:204272..205580 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013830 | SGNH_hydro |
Blast
The following BLAST results are available for this feature:
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