TCONS_00057807 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057807
Unique NameTCONS_00057807
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length395

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057807 ID=TCONS_00057807|Name=TCONS_00057807|organism=Clytia hemisphaerica|type=transcript|length=395bp
attttttatgtcctATATTCCGCTTCTTTTTAAAACTGTACATATTATAT
ACCTAACTACTttgggtgataaaagagatatatatatatatactttTGTT
TTGGGTTTACTATTATGTGAACTTTCTGAAGTCTCAATTCAATTTACTAG
GATCCTCTTTAATCACATCAGCAGCTTTTTCAGCGATCATAATTGTAGGT
GCAGTAGTATTTCCACCGACAATGGTTGGCATGATTGATGCATCGACAAC
ACGTAATCCTTTGATACCATAAACTTTCAATGTTGAATCTACAACTGCTT
GATCATCATTAGGGGTCCCATCTTGCACGTACCCACTGGGTGGTAGAGTG
TCGCTGCTCCTCGTTTCGCTAaacatttgtaaaaatcatCTGATC
Run BLAST on NCBI

transcript from alignment at scaffold_298:162632..163026

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057807 ID=TCONS_00057807|Name=TCONS_00057807|organism=Clytia hemisphaerica|type=transcript|length=395bp|location=Sequence derived from alignment at scaffold_298:162632..163026 (Clytia hemisphaerica)
GATCAGatgatttttacaaatgttTAGCGAAACGAGGAGCAGCGACACTC
TACCACCCAGTGGGTACGTGCAAGATGGGACCCCTAATGATGATCAAGCA
GTTGTAGATTCAACATTGAAAGTTTATGGTATCAAAGGATTACGTGTTGT
CGATGCATCAATCATGCCAACCATTGTCGGTGGAAATACTACTGCACCTA
CAATTATGATCGCTGAAAAAGCTGCTGATGTGATTAAAGAGGATCCTAGT
AAATTGAATTGAGACTTCAGAAAGTTCACATAATAGTAAACCCAAAACAa
aagtatatatatatatatctcttttatcacccaaAGTAGTTAGGTATATA
ATATGTACAGTTTTAAAAAGAAGCGGAATATaggacataaaaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036437XLOC_036437Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057807-exon-scaffold_298-1491911889:162632..163026TCONS_00057807-exon-scaffold_298-1491911889:162632..163026Clytia hemisphaericaexon
TCONS_00057807-exon-scaffold_298-1510915933:162632..163026TCONS_00057807-exon-scaffold_298-1510915933:162632..163026Clytia hemisphaericaexon
TCONS_00057807-exon-scaffold_298-1575043694:162632..163026TCONS_00057807-exon-scaffold_298-1575043694:162632..163026Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_298supercontigscaffold_298:162632..163026 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.05258	2.14177	0.576271	0.82724	0	1.42283	0.245227	0.229579	0.321467	0.620328	0	0.677443	3.83174	5.95625	5.13628	7.60467	1.91262	4.48257	12.3915	9.04517	0.524889	0.592999	1.67428	1.83547	1.43353	0.91385	0.290166	0.656545	2.28256	1.27794
Blast
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BLAST of TCONS_00057807 vs. Swiss-Prot (Human)
Match: CHDH (Choline dehydrogenase, mitochondrial OS=Homo sapiens GN=CHDH PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 7.371e-19
Identity = 40/79 (50.63%), Postives = 52/79 (65.82%), Query Frame = -2 
Query:  146 LQMFSETRSSDTLPPSGYVQDGTPNDDQAVVDSTLKVYGIKGLRVVDASIMPTIVGGNTTAPTIMIAEKAADVIKEDPS 382
            +  F   ++     PS   + G P+D  AVVD   +V G++ LRVVDASIMP++V GN  APTIMIAEKAAD+IK  P+
Sbjct:  498 IDAFVRAKADSAYHPSCTCKMGQPSDPTAVVDPQTRVLGVENLRVVDASIMPSMVSGNLNAPTIMIAEKAADIIKGQPA 576
The following BLAST results are available for this feature:
BLAST of TCONS_00057807 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CHDH7.371e-1950.63Choline dehydrogenase, mitochondrial OS=Homo sapie... [more]
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