TCONS_00057801 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057801
Unique NameTCONS_00057801
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1084

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057801 ID=TCONS_00057801|Name=TCONS_00057801|organism=Clytia hemisphaerica|type=transcript|length=1084bp
AACGATTTTTAGATCAAAGGGGTTGTTTCTGGAGGTTGAGTATCCAAATA
AATTCAGCTTATAATTCTAGACTATTTACCTTTCAGacattattttatat
tttataacgTCTTTTGTGAAATATAATTTGCTAGCTGGCATCAACTTTCC
CtatgtttataaataaaatactTGTATAATACTAAAAAAATGTCAGGACA
AAATTAGGTTCAACTGGCAGGTTTATCATAAATTTCTGTGTTTCTAAGAA
AGGTTGGCAGTATatgattaattttttcaatttttttagtaGAAATACCG
TTGAAAGCACAGTAGCTCGTTATCAATGACAAGATTCGTTGAAATTCTGA
TAATTAAAGATAATAAAACGCTCTTATTGATAATAGCCTGCTACTTGGAC
GTCTTTAAATTAAAATACGTTAAAAGAGATTGGCAGCACCTCTACACATT
GAAGCTTTCAATCCTTCTTGaacttcctttttttttcagcctCAGAACAT
TCCtgtgaaattttattttcatggtTGTGAAAGCAATCCAATCCATCTTC
AAATTTAATAGTGATTTCCTCCCCAATCTGTGAATTAATTTCTTCAATCG
GTATAGACTGATCAAAACAATTCATTCAATCGTTaatattttctgaattt
ttattttccaaaatgttcatcaattttagactttcattctcaTCATCTTG
AGGTTTTGACTCAGCTTCAAGTTTATTGataatttcacaatttttggGGT
TTGTTTCTTCGGATGATGTAACATCATTCCCCTttacatttctacaagaa
atttTAAATAGTTCATTTTCACGGTTTTTGAATGGTTCCAAAATCTCGTC
GTCTGGATATCCAATTGATTCATTTCCCAGTTTGATAACAATTTCCAAAT
GTTCGTGTTTCGTTTCATCACAACCatgaatttcttcttcttcaattttt
atttttattttttcaatctcattcattttttaaacaaaacactCTAAATG
AAAGAAAGATACAGTACCAGAATTGAAATTAATATGCTTGAAAATGTCTA
AAGAAGTGTTAAATATAATTGTTgcagaaattta
Run BLAST on NCBI

protein sequence of TCONS_00057801-protein

>TCONS_00057801-protein ID=TCONS_00057801-protein|Name=TCONS_00057801-protein|organism=Clytia hemisphaerica|type=polypeptide|length=116bp
MNEIEKIKIKIEEEEIHGCDETKHEHLEIVIKLGNESIGYPDDEILEPFK
NRENELFKISCRNVKGNDVTSSEETNPKNCEIINKLEAESKPQDDENESL
KLMNILENKNSENIND
Run BLAST on NCBI

transcript from alignment at scaffold_298:41751..42834

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057801 ID=TCONS_00057801|Name=TCONS_00057801|organism=Clytia hemisphaerica|type=transcript|length=1084bp|location=Sequence derived from alignment at scaffold_298:41751..42834 (Clytia hemisphaerica)
taaatttctgcAACAATTATATTTAACACTTCTTTAGACATTTTCAAGCA
TATTAATTTCAATTCTGGTACTGTATCTTTCTTTCATTTAGagtgttttg
tttaaaaaatgaatgagattgaaaaaataaaaataaaaattgaagaagaa
gaaattcatGGTTGTGATGAAACGAAACACGAACATTTGGAAATTGTTAT
CAAACTGGGAAATGAATCAATTGGATATCCAGACGACGAGATTTTGGAAC
CATTCAAAAACCGTGAAAATGAACTATTTAaaatttcttgtagaaatgta
aAGGGGAATGATGTTACATCATCCGAAGAAACAAACCccaaaaattgtga
aattatCAATAAACTTGAAGCTGAGTCAAAACCTCAAGATGAtgagaatg
aaagtctaaaattgatgaacattttggaaaataaaaattcagaaaatatt
AACGATTGAATGAATTGTTTTGATCAGTCTATACCGATTGAAGAAATTAA
TTCACAGATTGGGGAGGAAATCACTATTAAATTTGAAGATGGATTGGATT
GCTTTCACAaccatgaaaataaaatttcacaGGAATGTTCTGaggctgaa
aaaaaaaggaagttCAAGAAGGATTGAAAGCTTCAATGTGTAGAGGTGCT
GCCAATCTCTTTTAACGTATTTTAATTTAAAGACGTCCAAGTAGCAGGCT
ATTATCAATAAGAGCGTTTTATTATCTTTAATTATCAGAATTTCAACGAA
TCTTGTCATTGATAACGAGCTACTGTGCTTTCAACGGTATTTCtactaaa
aaaattgaaaaaattaatcatATACTGCCAACCTTTCTTAGAAACACAGA
AATTTATGATAAACCTGCCAGTTGAACCTAATTTTGTCCTGACATTTTTT
TAGTATTATACAagtattttatttataaacataGGGAAAGTTGATGCCAG
CTAGCAAATTATATTTCACAAAAGAcgttataaaatataaaataatgtCT
GAAAGGTAAATAGTCTAGAATTATAAGCTGAATTTATTTGGATACTCAAC
CTCCAGAAACAACCCCTTTGATCTAAAAATCGTT

Coding sequence (CDS) from alignment at scaffold_298:41751..42834

>TCONS_00057801 ID=TCONS_00057801|Name=TCONS_00057801|organism=Clytia hemisphaerica|type=CDS|length=351bp|location=Sequence derived from alignment at scaffold_298:41751..42834 (Clytia hemisphaerica)
atgaatgagattgaaaaaataaaaataaaaattgaagaagaagaaattca
tGGTTGTGATGAAACGAAACACGAACATTTGGAAATTGTTATCAAACTGG
GAAATGAATCAATTGGATATCCAGACGACGAGATTTTGGAACCATTCAAA
AACCGTGAAAATGAACTATTTAaaatttcttgtagaaatgtaaAGGGGAA
TGATGTTACATCATCCGAAGAAACAAACCccaaaaattgtgaaattatCA
ATAAACTTGAAGCTGAGTCAAAACCTCAAGATGAtgagaatgaaagtcta
aaattgatgaacattttggaaaataaaaattcagaaaatattAACGATTG
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036431XLOC_036431Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057801-proteinTCONS_00057801-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057801-exon-scaffold_298-1491911889:41751..42834TCONS_00057801-exon-scaffold_298-1491911889:41751..42834Clytia hemisphaericaexon
TCONS_00057801-exon-scaffold_298-1510915933:41751..42834TCONS_00057801-exon-scaffold_298-1510915933:41751..42834Clytia hemisphaericaexon
TCONS_00057801-exon-scaffold_298-1575043694:41751..42834TCONS_00057801-exon-scaffold_298-1575043694:41751..42834Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_298supercontigscaffold_298:41751..42834 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
42.1859	42.137	22.4903	22.1693	5.05015	3.94531	6.98519	6.78346	4.88593	2.9202	5.5423	4.45277	3.20894	2.10032	6.40242	5.13276	5.95206	4.40301	0.646519	1.21057	7.03753	6.0711	39.0341	30.6979	2.17662	2.27007	6.02586	4.82219	13.0958	16.2345
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057801 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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