TCONS_00057800 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057800
Unique NameTCONS_00057800
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length742

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057800 ID=TCONS_00057800|Name=TCONS_00057800|organism=Clytia hemisphaerica|type=transcript|length=742bp
tgcttgttgaaaagataaaaatgagtggaatagaaataaaaatgatgata
aaaataaaaacaaaaatttaacaaaaattcggaaataataaagttttaaa
ctgtagtttttgactgaatgaataTTCTTAATTGTTTTTAGCAGTTATGA
CGTTGTAATATTGAAGCATCTCCgatacaaaaatgaagatcatagcactt
ttctacaagaagttaaatttcttcttcttcatttttcatcttcattactC
ATTAAGGAATGGGGTTATACATACAATACTTTTCTAATAATAGGGACCCC
TTCAACAatataaacttttgaaaaatcttttcgatccAAAAACTTTCACC
CTTAGAAGAGACAAAATTGTAACTTGCTTATGTTGACATCACTATGACTT
CATCATAACTAAAACACATCTATGATCAAGAAAGAATTGGCCAAAAAACG
ATAATTCAAGAGAAGAGTTAGCTTTGTAGATTTGGTAATTTATTAcaaat
ttgaatgtttttaagaAAGGTTTGCAGCGCATTATCATCTGTTCCAGCTT
GTAAGaataaagctctatttaagacaCCGTAGGGAGCTCTTTAATCGATG
ACAACCGATGAGACTTTCGTTTTTAGGatccaaaaatgttcttatcgcCT
AAGCGCTTGTTCTTTGGTGtgtcttcaaattagttttcccTGCAAAAGGT
TTGCAACACTTTCACACGTAAAAGCTTTCTTTCTCTCGTTAA
Run BLAST on NCBI

transcript from alignment at scaffold_298:40817..41558

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057800 ID=TCONS_00057800|Name=TCONS_00057800|organism=Clytia hemisphaerica|type=transcript|length=742bp|location=Sequence derived from alignment at scaffold_298:40817..41558 (Clytia hemisphaerica)
TTAACGAGAGAAAGAAAGCTTTTACGTGTGAAAGTGTTGCAAACCTTTTG
CAgggaaaactaatttgaagacaCACCAAAGAACAAGCGCTTAGgcgata
agaacatttttggatCCTAAAAACGAAAGTCTCATCGGTTGTCATCGATT
AAAGAGCTCCCTACGGtgtcttaaatagagctttattCTTACAAGCTGGA
ACAGATGATAATGCGCTGCAAACCTTtcttaaaaacattcaaatttgTAA
TAAATTACCAAATCTACAAAGCTAACTCTTCTCTTGAATTATCGTTTTTT
GGCCAATTCTTTCTTGATCATAGATGTGTTTTAGTTATGATGAAGTCATA
GTGATGTCAACATAAGCAAGTTACAATTTTGTCTCTTCTAAGGGTGAAAG
TTTTTggatcgaaaagatttttcaaaagtttatatTGTTGAAGGGGTCCC
TATTATTAGAAAAGTATTGTATGTATAACCCCATTCCTTAATGagtaatg
aagatgaaaaatgaagaagaagaaatttaacttcttgtagaaaagtgcta
tgatcttcatttttgtatcGGAGATGCTTCAATATTACAACGTCATAACT
GCTAAAAACAATTAAGAAtattcattcagtcaaaaactacagtttaaaac
tttattatttccgaatttttgttaaatttttgtttttatttttatcatca
tttttatttctattccactcatttttatcttttcaacaagca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036430XLOC_036430Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057800-exon-scaffold_298-1491911889:40817..41558TCONS_00057800-exon-scaffold_298-1491911889:40817..41558Clytia hemisphaericaexon
TCONS_00057800-exon-scaffold_298-1510915933:40817..41558TCONS_00057800-exon-scaffold_298-1510915933:40817..41558Clytia hemisphaericaexon
TCONS_00057800-exon-scaffold_298-1575043694:40817..41558TCONS_00057800-exon-scaffold_298-1575043694:40817..41558Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_298supercontigscaffold_298:40817..41558 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.352	4.71267	2.65473	2.0018	1.93472	1.39609	2.54125	2.74081	0.756962	1.5297	1.3743	0.576292	0.650749	0.610769	0.942593	0.67514	1.18612	0.834302	0.283029	0.228726	1.17511	1.01327	4.98855	3.88933	0.500255	1.14806	0.365081	0.653596	2.54778	2.99537
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057800 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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