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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057791 ID=TCONS_00057791|Name=TCONS_00057791|organism=Clytia hemisphaerica|type=transcript|length=532bp
GAACTTGATGAGAACGTCTTAGACCCAACAAAATGGGGTTGGCAGGGCTC
TGATACAGGTCTTCGTCCAATTAGAACCATCAAGTCAGTCGCGCCACCCG
AAATTCTCAAAATTATCAAATGTAAATGCAAGATGTCCTCTAAGAATCCT
TGTGGAACAAATCTTTGCTCTTGCCGGAAAAATGGTATACCATGTATGCC
TGCGTGTGGTAATTGCCATGGCATGGATTGTAACAATAAAACGGTTAAAA
GGGATCACGACGACGAGGAGATACCAGACGAAACAATACACGAAGCAACA
TACGACACGACAAACGAAACAACAGAGGAAAATCAGAACGAAACCTTCAA
TGACTTTTACGATGATAGgaatatttttgatttgtttgattgAGGTCCTT
GAAAAACGAAACTAAAATCGATCGACCGATTgtcctttattttttattga
taatgtaCCCACTTTAAGGCCTCATAAATCTTTGTGAGATGATTTTCAGG
TTTCTTTGTAGGCAACTTTTTTGTTCGTATTG Run BLAST on NCBI protein sequence of TCONS_00057791-protein >TCONS_00057791-protein ID=TCONS_00057791-protein|Name=TCONS_00057791-protein|organism=Clytia hemisphaerica|type=polypeptide|length=130bp
ELDENVLDPTKWGWQGSDTGLRPIRTIKSVAPPEILKIIKCKCKMSSKNP
CGTNLCSCRKNGIPCMPACGNCHGMDCNNKTVKRDHDDEEIPDETIHEAT
YDTTNETTEENQNETFNDFYDDRNIFDLFD Run BLAST on NCBI transcript from alignment at scaffold_298:363808..365866- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057791 ID=TCONS_00057791|Name=TCONS_00057791|organism=Clytia hemisphaerica|type=transcript|length=2059bp|location=Sequence derived from alignment at scaffold_298:363808..365866- (Clytia hemisphaerica)
GAACTTGATGAGAACGTCTTAGACCCAACAAAATGGGGTTGGCAGGGCTC
TGATACAGGTCTTCGTCCAATTAGAACCATCAAGTCAGTCGCGCCACCCG
AAATTCTCAAAATTATCAAATGTAAATGCAAGATGTCCTCTAAGAATCCT
TGTGGAACAAATCTTTGCTCTTGCCGGAAAAATGGTATACCATGTATGCC
TGCGTGTGGTAATTGCCATGGCATGGATTGTAACAATAAAACGGTAAGAT
TCCATAACCATTTAAGTCTAGCCGGGCCAGAAAGCTTCTTTCTTAATTCT
TATATTGATGGTTTTCTCAGGTGAAAAGGGATCACGACGACGAGGAGATA
CCAGACGAAACAATACACGAAGCAACATACGACACGACAAACGAAACAAC
AGAGGAAAATCAGAACGAAACCTTCAATGACTTTTACGATGATAGGAATA
TTTTTGATTTGTTTGATTGAGGTCCTTGAAAAACGAAACTAAAATCGATC
GACCGATTGTCCTTTATTTTTTATTGATAATGTACCCACTTTAAGGCCTC
ATAAATCTTTGTGAGATGATTTTCAGGTTTCTTTATAGGCAATTTTCTTG
TCCGTATTGAAATTATCTTTCTTTTGATATATGGGAAATATATATGCGAA
ATGGGATTTTCCAGAAAAAAAGTGCATAAGGGCAATGAAGGATTCAACGA
TTTTAAGTATTTTTAAGAAAGTGCCAAAGTTGAGGGTGAAATATTCTTAG
CGCTTTCTTACTTTTTTAAACCTGACTTTTTACAAACATGAGAAATAACT
CTCGGGTACCTAATAGCTGGGAGGGGGTTGGAATAAAAATNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNCCCCCCCACATCTGATGCTGCAACGCA
ACATGGTGCCAGAGTTCACATCCAGGTAATCACTTTATGACCTCTGGCTG
ATCAAGTGCGAAACCAAAACCAAACAATTTATGAACTATAATAGATGTCA
TTTTCGTTACTTATTTAGGTGATTCGGTGGAAAGAACTTGATGAGAACGT
CTTAGACCCAACAAAATGGGGTTGGCAGGGCTCTGATACAGGTCTTCGTC
CAATTAGAACCATCAAGTCAGTCGCGCCACCCGAAATTCTCAAAATTATC
AAATGTAAATGCAAGATGTCCTCTAAGAATCCTTGTGGAACAAATCTTTG
CTCTTGCCGAAAAAATGGTATACCATGTATGCCTGCGTGCGGTAATTGCC
ATGGCATGGATTGTAACAATAAAACGGTAAGATTCCATAACCATTTAAGT
CTAGCAGGGCCAGAAATTTGGGGCGTAAATAAAGCTTCTTTCTTAATTCT
TATATTGATGGTTTTCTCAGGTTAAAAGGGATCACGACGACGAGGAGATA
CCAGACGAAACAATACACGAAGCAACATACGACACGACAAACGAAACAAC
AGAGGAAAATCAGAACGAAACCTTCAATGACTTTTACGATGATAGGAATA
TTTTTGATTTGTTTGATTGAGGTCCTTGAAAAACGAAACTAAAATCGATC
GACCGATTGTCCTTTATTTTTTATTGATAATGTACCCACTTTAAGGCCTC
ATAAATCTTTGTGAGATGATTTTCAGGTTTCTTTGTAGGCAACTTTTTTG
TTCGTATTG Coding sequence (CDS) from alignment at scaffold_298:363808..365866- >TCONS_00057791 ID=TCONS_00057791|Name=TCONS_00057791|organism=Clytia hemisphaerica|type=CDS|length=786bp|location=Sequence derived from alignment at scaffold_298:363808..365866- (Clytia hemisphaerica)
GTTAAAAGGGATCACGACGACGAGGAGATACCAGACGAAACAATACACGA
AGCAACATACGACACGACAAACGAAACAACAGAGGAAAATCAGAACGAAA
CCTTCAATGACTTTTACGATGATAGGAATATTTTTGATTTGTTTGATTGA
GAACTTGATGAGAACGTCTTAGACCCAACAAAATGGGGTTGGCAGGGCTC
TGATACAGGTCTTCGTCCAATTAGAACCATCAAGTCAGTCGCGCCACCCG
AAATTCTCAAAATTATCAAATGTAAATGCAAGATGTCCTCTAAGAATCCT
TGTGGAACAAATCTTTGCTCTTGCCGGAAAAATGGTATACCATGTATGCC
TGCGTGTGGTAATTGCCATGGCATGGATTGTAACAATAAAACGGTTAAAA
GGGATCACGACGACGAGGAGATACCAGACGAAACAATACACGAAGCAACA
TACGACACGACAAACGAAACAACAGAGGAAAATCAGAACGAAACCTTCAA
TGACTTTTACGATGATAGGAATATTTTTGATTTGTTTGATTGAGAACTTG
ATGAGAACGTCTTAGACCCAACAAAATGGGGTTGGCAGGGCTCTGATACA
GGTCTTCGTCCAATTAGAACCATCAAGTCAGTCGCGCCACCCGAAATTCT
CAAAATTATCAAATGTAAATGCAAGATGTCCTCTAAGAATCCTTGTGGAA
CAAATCTTTGCTCTTGCCGGAAAAATGGTATACCATGTATGCCTGCGTGT
GGTAATTGCCATGGCATGGATTGTAACAATAAAACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057791-exon-scaffold_298-1575043694:365624..365866 | TCONS_00057791-exon-scaffold_298-1575043694:365624..365866 | Clytia hemisphaerica | exon |
| TCONS_00057791-exon-scaffold_298-1575043694:363808..364096 | TCONS_00057791-exon-scaffold_298-1575043694:363808..364096 | Clytia hemisphaerica | exon |
| TCONS_00057791-exon-scaffold_298-1510915933:365624..365866 | TCONS_00057791-exon-scaffold_298-1510915933:365624..365866 | Clytia hemisphaerica | exon |
| TCONS_00057791-exon-scaffold_298-1510915933:363808..364096 | TCONS_00057791-exon-scaffold_298-1510915933:363808..364096 | Clytia hemisphaerica | exon |
| TCONS_00057791-exon-scaffold_298-1491911889:365624..365866 | TCONS_00057791-exon-scaffold_298-1491911889:365624..365866 | Clytia hemisphaerica | exon |
| TCONS_00057791-exon-scaffold_298-1491911889:363808..364096 | TCONS_00057791-exon-scaffold_298-1491911889:363808..364096 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_298 | supercontig | scaffold_298:363808..365866 - |
Blast
The following BLAST results are available for this feature:
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