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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057780 ID=TCONS_00057780|Name=TCONS_00057780|organism=Clytia hemisphaerica|type=transcript|length=2232bpRun BLAST on NCBI transcript from alignment at scaffold_298:276337..327969- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00057780 ID=TCONS_00057780|Name=TCONS_00057780|organism=Clytia hemisphaerica|type=transcript|length=51633bp|location=Sequence derived from alignment at scaffold_298:276337..327969- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00057780 vs. Swiss-Prot (Human)
Match: SULF1 (Extracellular sulfatase Sulf-1 OS=Homo sapiens GN=SULF1 PE=1 SV=1) HSP 1 Score: 226.098 bits (575), Expect = 7.342e-111 Identity = 123/324 (37.96%), Postives = 182/324 (56.17%), Query Frame = 3
Query: 756 MDYFTKHSLKANDKPLFMVVSHSAPHGPEDGAPHHYDKFPDAKAPRHPNYNFT-SLDKHWIIRNTPPLNNVTSQFTDVLHRKRLITLLALDDAIENLFIMLMKTGQLHNTYVFFSSDHGYHLGQFNQVKGKSQPYESDIRIPLYMRGPKIPKGEVREEIALNIDFAPTFLDIAGAKPNRIMDGTSLLDVAVRPTDNNNINSKVKKPIWKDTFLVERGRLVRPVSFKEPDSRE----------EEILKLCLKYGYPKPPCTPEKKIVCYS-SGDQIYVQKCS-----VEVSETER-------------CSCTRDGSRDDPSATSS 1637
++YF +P+ MV+SH+APHGPED AP +P+A P+YN+ ++DKHWI++ T P+ + +FT++L RKRL TL+++DD++E L+ ML++TG+L NTY+ +++DHGYH+GQF VKGKS PY+ DIR+P ++RGP + G + +I LNID APT LDIAG +DG S+L + N + K IW+DTFLVERG+ +R KE S+ E + +LC + Y P +K C + ++ + KC + V ++ R CSC G R S S
Sbjct: 200 INYFKMSKRMYPHRPVMMVISHAAPHGPEDSAPQFSKLYPNASQHITPSYNYAPNMDKHWIMQYTGPMLPIHMEFTNILQRKRLQTLMSVDDSVERLYNMLVETGELENTYIIYTADHGYHIGQFGLVKGKSMPYDFDIRVPFFIRGPSVEPGSIVPQIVLNIDLAPTILDIAGLDTPPDVDGKSVLKLLDPEKPGNRFRTNKKAKIWRDTFLVERGKFLRK---KEESSKNIQQSNHLPKYERVKELCQQARYQTACEQPGQKWQCIEDTSGKLRIHKCKGPSDLLTVRQSTRNLYARGFHDKDKECSCRESGYRASRSQRKS 520 HSP 2 Score: 194.897 bits (494), Expect = 7.342e-111 Identity = 87/158 (55.06%), Postives = 113/158 (71.52%), Query Frame = 2
Query: 278 RPNIIFIMADDLDVTLGSPDVMRKTNVLLRQQGVTFKNAFTTSPLCCPSRSSILTGRYTHNHHVHSNNKNCSGPGWINKEEKETMGVFMQQAGYQTAYFGKYLNNYDGGRVPPGWDHWNALRGNSRFYNYTLNINGKLKRHNHEYKKDYFTNVITDQS 751
RPNII ++ DD DV LGS VM KT ++ G TF NAF T+P+CCPSRSS+LTG+Y HNH+V++NN+NCS P W E T V++ GY+TA+FGKYLN Y+G +PPGW W L NSRFYNYT+ NG ++H +Y KDYFT++IT++S
Sbjct: 42 RPNIILVLTDDQDVELGSLQVMNKTRKIMEHGGATFINAFVTTPMCCPSRSSMLTGKYVHNHNVYTNNENCSSPSWQAMHEPRTFAVYLNNTGYRTAFFGKYLNEYNGSYIPPGWREWLGLIKNSRFYNYTVCRNGIKEKHGFDYAKDYFTDLITNES 199 HSP 3 Score: 103.219 bits (256), Expect = 1.516e-22 Identity = 40/70 (57.14%), Postives = 53/70 (75.71%), Query Frame = 3
Query: 1692 GLKCFLMNKNYWKTPPYWTGPDFVACVNTANNTHWCLRTINSTHNFLYCKY*TGFVEYFDMMEDPYQLVH 1901
GL CF + N+W+T P+W F AC ++ NNT+WCLRT+N THNFL+C++ TGF+EYFDM DPYQL +
Sbjct: 743 GLTCFTHDNNHWQTAPFWNLGSFCACTSSNNNTYWCLRTVNETHNFLFCEFATGFLEYFDMNTDPYQLTN 812 The following BLAST results are available for this feature:
BLAST of TCONS_00057780 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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