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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057778 ID=TCONS_00057778|Name=TCONS_00057778|organism=Clytia hemisphaerica|type=transcript|length=2500bpRun BLAST on NCBI transcript from alignment at scaffold_298:276337..288210- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00057778 ID=TCONS_00057778|Name=TCONS_00057778|organism=Clytia hemisphaerica|type=transcript|length=11874bp|location=Sequence derived from alignment at scaffold_298:276337..288210- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00057778 vs. Swiss-Prot (Human)
Match: SULF2 (Extracellular sulfatase Sulf-2 OS=Homo sapiens GN=SULF2 PE=1 SV=1) HSP 1 Score: 194.512 bits (493), Expect = 4.919e-100 Identity = 96/196 (48.98%), Postives = 129/196 (65.82%), Query Frame = 3
Query: 501 LSLKQITCVLFTLLISNTD-----GRRRKFKRGYLSNRPNIIFILADDLDVTLGSPDVMRKTNALLRQQGVTFKNAFSTSPLCCPSRSSILTGRYTHNHHVHSNNKNCSGPGWINKEEKETIGVFMQKAGYQTAFFGKYLNKYDGRRVPPGWDHWNALRGNSRYYNYTLNINGKLKRHNHDY-KNYFTNVITDQST 1070
L L ++ +F+LL ++ + +F+R + RPNII +L DD DV LGS VM KT ++ Q G F NAF T+P+CCPSRSSILTG+Y HNH+ ++NN+NCS P W + E T V++ GY+TAFFGKYLN+Y+G VPPGW W L NSR+YNYTL NG ++H DY K+Y T++IT+ S
Sbjct: 6 LVLCLLSATVFSLLGGSSAFLSHHRLKGRFQRDRRNIRPNIILVLTDDQDVELGSMQVMNKTRRIMEQGGAHFINAFVTTPMCCPSRSSILTGKYVHNHNTYTNNENCSSPSWQAQHESRTFAVYLNSTGYRTAFFGKYLNEYNGSYVPPGWKEWVGLLKNSRFYNYTLCRNGVKEKHGSDYSKDYLTDLITNDSV 201 HSP 2 Score: 190.66 bits (483), Expect = 4.919e-100 Identity = 91/192 (47.40%), Postives = 130/192 (67.71%), Query Frame = 1
Query: 1111 KPLLMVVAHSAPHGPEDGARPYYEKFPDVKAPRDPNYNFT-SLDKHWLIRNTPPLNNVTSQFTDTLHRKRLITLLSLDDAIENVILTLEKTGQLHNTYVFFSSGHGYHLGQFNLVKGKSQPYESDIRIPLYMRGPNIPKDEVREEIALNIDFAPTFLDIAGAKPNRIMDGTSLLDV--AVRPTDNNNINRRL 1677
+P+LMV++H+APHGPED A Y FP+ P+YN+ + DKHW++R T P+ + +FT+ L RKRL TL+S+DD++E + L +TG+L NTY+ +++ HGYH+GQF LVKGKS PYE DIR+P Y+RGPN+ + I LNID APT LDIAG MDG S+L + RP + ++ +++
Sbjct: 214 RPVLMVISHAAPHGPEDSAPQYSRLFPNASQHITPSYNYAPNPDKHWIMRYTGPMKPIHMEFTNMLQRKRLQTLMSVDDSMETIYNMLVETGELDNTYIVYTADHGYHIGQFGLVKGKSMPYEFDIRVPFYVRGPNVEAGCLNPHIVLNIDLAPTILDIAGLDIPADMDGKSILKLLDTERPVNRFHLKKKM 405 HSP 3 Score: 100.138 bits (248), Expect = 9.766e-22 Identity = 39/69 (56.52%), Postives = 52/69 (75.36%), Query Frame = 1
Query: 1960 GLKCFLMNKNYWKTPPYWTGPDFVACVNTANNTHWCLRTINSTHNFLYCKY*TGFVEYFDMMEDPYQLV 2166
GL CF + +W+T P+WT F AC + NNT+WC+RTIN THNFL+C++ TGF+EYFD+ DPYQL+
Sbjct: 724 GLTCFTHDNQHWQTAPFWTLGPFCACTSANNNTYWCMRTINETHNFLFCEFATGFLEYFDLNTDPYQLM 792 HSP 4 Score: 23.0978 bits (48), Expect = 9.766e-22 Identity = 11/41 (26.83%), Postives = 22/41 (53.66%), Query Frame = 3
Query: 2199 ELLHMRKCRGTKECFLKA-SQSIFLCQKGYSSQVSHYERKK 2318
+L+ +R C+G K+C + + + L G Q ++R+K
Sbjct: 809 QLMELRSCKGYKQCNPRTRNMDLGLKDGGSYEQYRQFQRRK 849 The following BLAST results are available for this feature:
BLAST of TCONS_00057778 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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