Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057725 ID=TCONS_00057725|Name=TCONS_00057725|organism=Clytia hemisphaerica|type=transcript|length=2119bpRun BLAST on NCBI transcript from alignment at scaffold_298:38229..40347+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00057725 ID=TCONS_00057725|Name=TCONS_00057725|organism=Clytia hemisphaerica|type=transcript|length=2119bp|location=Sequence derived from alignment at scaffold_298:38229..40347+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Blast
BLAST of TCONS_00057725 vs. Swiss-Prot (Human)
Match: ZN160 (Zinc finger protein 160 OS=Homo sapiens GN=ZNF160 PE=2 SV=3) HSP 1 Score: 286.574 bits (732), Expect = 2.130e-84 Identity = 168/404 (41.58%), Postives = 226/404 (55.94%), Query Frame = 2 Query: 728 KPFKCNECGERFYQESTLTQHKGIHKLKGYKYRCKQCDKGYNAK---------------------------NAFIQHHKDIHKDLRPFKCDECHKAFSSETYLTIHQRTVHEGVKPFECKECGKCFAEKRQLTSHHRFVHESIKPYKCQECGKCFATKSYLKRHKLTVHDGIKAFECQECAKSFATKSFLVRHQRTVHQGINPFECQECAKSFATKSCLARHQRTIHEGIRPFKCQECGFFFGRKYDLVRHHRIVHEGIKAFECQECGKCFVEKRNLTSHQLTVHEGINPFECQECAKSFATKSCLVRHQRTIHEGIRPFKCQ*CGNCFAEKKTINFSSQICP*KCIKPY*CQECGKCFATKSYLKLHKLLVHDEIKDFVCQECGKCFAAKSYLKRHKLTVHDG 1858 KP+KCNECG+ F Q S LT H+ IH + Y+C +C K + + N+++ H+ IH +P+KC+EC KAF + LT HQ +H G KPF+C ECGK F + L SH R +H KPYKC ECGK F+ +S L H+ T+H G K ++C EC K F S+L RH+R VH G P++C EC K+F+ S LA HQ IH G +PFKC EC F + L H RI H G K ++C ECGK F + +LT+HQ +H G P++C EC KSF KS L R R IH G +P+KC CG FA+ + ++ + KPY C +CG+ F+ +S L H+ +H K + C ECGK F SYL H+ +H G Sbjct: 255 KPYKCNECGKAFTQNSNLTSHRRIHSGEK-PYKCSECGKTFTVRSNLTIHQVIHTGEKPYKCHECGKVFRHNSYLATHRRIHTGEKPYKCNECGKAFRGHSNLTTHQ-LIHTGEKPFKCNECGKLFTQNSHLISHWR-IHTGEKPYKCNECGKAFSVRSSLAIHQ-TIHTGEKPYKCNECGKVFRYNSYLGRHRR-VHTGEKPYKCNECGKAFSMHSNLATHQ-VIHTGTKPFKCNECSKVFTQNSQLANHRRI-HTGEKPYKCNECGKAFSVRSSLTTHQ-AIHSGEKPYKCIECGKSFTQKSHL-RSHRGIHSGEKPYKCNECGKVFAQTSQLARHWRVHTGE--KPYKCNDCGRAFSDRSSLTFHQ-AIHTGEKPYKCHECGKVFRHNSYLATHR-RIHTG 645 HSP 2 Score: 285.034 bits (728), Expect = 8.521e-84 Identity = 169/404 (41.83%), Postives = 228/404 (56.44%), Query Frame = 2 Query: 728 KPFKCNECGERFYQESTLTQHKGIHKLKGYKYRCKQCDKGYNAKNAFIQHHKDIHKDLRPFKCDECHKAFSSETYLTIHQRTVHEGVKPFECKECGKCFAEKRQLTSHHRF-----------------------VHESI----KPYKCQECGKCFATKSYLKRHKLTVHDGIKAFECQECAKSFATKSFLVRHQRTVHQGINPFECQECAKSFATKSCLARHQRTIHEGIRPFKCQECGFFFGRKYDLVRHHRIVHEGIKAFECQECGKCFVEKRNLTSHQLTVHEGINPFECQECAKSFATKSCLVRHQRTIHEGIRPFKCQ*CGNCFAEKKTINFSSQICP*KCIKPY*CQECGKCFATKSYLKLHKLLVHDEIKDFVCQECGKCFAAKSYLKRHKLTVHDG 1858 KP+KC+ECG+ F S LT H+ IH + Y+C +C K + N+++ H+ IH +P+KC+EC KAF + LT HQ +H G KPF+C ECGK F + L SH R +H++I KPYKC ECGK F SYL RH+ VH G K ++C EC K+F+ S L HQ +H G PF+C EC+K F S LA H+R IH G +P+KC ECG F + L H+ +H G K ++C ECGK F +K +L SH+ +H G P++C EC K FA S L RH R +H G +P+KC CG F+++ ++ F I + KPY C ECGK F SYL H+ +H K + C ECGK F+ S L HK+ +H G Sbjct: 283 KPYKCSECGKTFTVRSNLTIHQVIHTGEK-PYKCHECGKVFR-HNSYLATHRRIHTGEKPYKCNECGKAFRGHSNLTTHQ-LIHTGEKPFKCNECGKLFTQNSHLISHWRIHTGEKPYKCNECGKAFSVRSSLAIHQTIHTGEKPYKCNECGKVFRYNSYLGRHR-RVHTGEKPYKCNECGKAFSMHSNLATHQ-VIHTGTKPFKCNECSKVFTQNSQLANHRR-IHTGEKPYKCNECGKAFSVRSSLTT-HQAIHSGEKPYKCIECGKSFTQKSHLRSHR-GIHSGEKPYKCNECGKVFAQTSQLARHWR-VHTGEKPYKCNDCGRAFSDRSSLTFHQAIHTGE--KPYKCHECGKVFRHNSYLATHR-RIHTGEKPYKCNECGKAFSMHSNLTTHKV-IHTG 673 HSP 3 Score: 279.641 bits (714), Expect = 7.619e-82 Identity = 160/371 (43.13%), Postives = 218/371 (58.76%), Query Frame = 2 Query: 728 KPFKCNECGERFYQESTLTQHKGIHKLKGYK-YRCKQCDKGYNAKNAFIQHHKDIHKDLRPFKCDECHKAFSSETYLTIHQRTVHEGVKPFECKECGKCFAEKRQLTSHHRFVHESIKPYKCQECGKCFATKSYLKRHKLTVHDGIKAFECQECAKSFATKSFLVRHQRTVHQGINPFECQECAKSFATKSCLARHQRTIHEGIRPFKCQECGFFFGRKYDLVRHHRIVHEGIKAFECQECGKCFVEKRNLTSHQLTVHEGINPFECQECAKSFATKSCLVRHQRTIHEGIRPFKCQ*CGNCFAEKKTINFSSQICP*KCIKPY*CQECGKCFATKSYLKLHKLLVHDEIKDFVCQECGKCFAAKSYLKRH 1837 KP+KCNECG+ F S L H+ IH G K ++C +C K + +N+ + +H+ IH +P+KC+EC KAFS + LT HQ +H G KP++C ECGK F +K L SH R +H KPYKC ECGK FA S L RH VH G K ++C +C ++F+ +S L HQ +H G P++C EC K F S LA H+R IH G +P+KC ECG F +L H +++H G K ++C +CGK F + +L +HQ T H G P+ C EC K+F+ +S L HQ IH G +P+KC CG F + + +I + KPY C ECGK F +S L H + +H K + C ECGK F S L H Sbjct: 451 KPYKCNECGKAFSMHSNLATHQVIHT--GTKPFKCNECSKVF-TQNSQLANHRRIHTGEKPYKCNECGKAFSVRSSLTTHQ-AIHSGEKPYKCIECGKSFTQKSHLRSH-RGIHSGEKPYKCNECGKVFAQTSQLARH-WRVHTGEKPYKCNDCGRAFSDRSSLTFHQ-AIHTGEKPYKCHECGKVFRHNSYLATHRR-IHTGEKPYKCNECGKAFSMHSNLTTH-KVIHTGEKPYKCNQCGKVFTQNSHLANHQRT-HTGEKPYRCNECGKAFSVRSSLTTHQ-AIHTGKKPYKCNECGKVFTQNAHLANHRRIHTGE--KPYRCTECGKAFRVRSSLTTH-MAIHTGEKRYKCNECGKVFRQSSNLASH 807 HSP 4 Score: 278.485 bits (711), Expect = 2.284e-81 Identity = 156/377 (41.38%), Postives = 224/377 (59.42%), Query Frame = 2 Query: 728 KPFKCNECGERFYQESTLTQHKGIHKLKGYKYRCKQCDKGYNAKNAFIQHHKDIHKDLRPFKCDECHKAFSSETYLTIHQRTVHEGVKPFECKECGKCFAEKRQLTSHHRFVHESIKPYKCQECGKCFATKSYLKRHKLTVHDGIKAFECQECAKSFATKSFLVRHQRTVHQGINPFECQECAKSFATKSCLARHQRTIHEGIRPFKCQECGFFFGRKYDLVRHHRIVHEGIKAFECQECGKCFVEKRNLTSHQLTVHEGINPFECQECAKSFATKSCLVRHQRTIHEGIRPFKCQ*CGNCFAEKKTINFSSQICP*KCIKPY*CQECGKCFATKSYLKLHKLLVHDEIKDFVCQECGKCFAAKSYLKRHKLTVHDG 1858 KP+KCNECG+ F S L +H+ +H + Y+C +C K ++ ++ + H+ IH +PFKC+EC K F+ + L H+R +H G KP++C ECGK F+ + LT+H + +H KPYKC ECGK F KS+L+ H+ +H G K ++C EC K FA S L RH R VH G P++C +C ++F+ +S L HQ IH G +P+KC ECG F R + HR +H G K ++C ECGK F NLT+H++ +H G P++C +C K F S L HQRT H G +P++C CG F+ + ++ I K KPY C ECGK F ++L H+ +H K + C ECGK F +S L H + +H G Sbjct: 423 KPYKCNECGKVFRYNSYLGRHRRVHTGEK-PYKCNECGKAFSM-HSNLATHQVIHTGTKPFKCNECSKVFTQNSQLANHRR-IHTGEKPYKCNECGKAFSVRSSLTTH-QAIHSGEKPYKCIECGKSFTQKSHLRSHR-GIHSGEKPYKCNECGKVFAQTSQLARHWR-VHTGEKPYKCNDCGRAFSDRSSLTFHQ-AIHTGEKPYKCHECGKVF-RHNSYLATHRRIHTGEKPYKCNECGKAFSMHSNLTTHKV-IHTGEKPYKCNQCGKVFTQNSHLANHQRT-HTGEKPYRCNECGKAFSVRSSLTTHQAIHTGK--KPYKCNECGKVFTQNAHLANHR-RIHTGEKPYRCTECGKAFRVRSSLTTH-MAIHTG 785 HSP 5 Score: 230.72 bits (587), Expect = 1.690e-64 Identity = 127/294 (43.20%), Postives = 174/294 (59.18%), Query Frame = 2 Query: 728 KPFKCNECGERFYQESTLTQHKGIHKLKGYKYRCKQCDKGYNAKNAFIQHHKDIHKDLRPFKCDECHKAFSSETYLTIHQRTVHEGVKPFECKECGKCFAEKRQLTSHHRFVHESIKPYKCQECGKCFATKSYLKRHKLTVHDGIKAFECQECAKSFATKSFLVRHQRTVHQGINPFECQECAKSFATKSCLARHQRTIHEGIRPFKCQECGFFFGRKYDLVRHHRIVHEGIKAFECQECGKCFVEKRNLTSHQLTVHEGINPFECQECAKSFATKSCLVRHQRTIHEGIRPFK 1609 KP+KC ECG+ F Q+S L H+GIH + Y+C +C K + A+ + + H +H +P+KC++C +AFS + LT HQ +H G KP++C ECGK F L +H R +H KPYKC ECGK F+ S L HK+ +H G K ++C +C K F S L HQRT H G P+ C EC K+F+ +S L HQ IH G +P+KC ECG F + L H RI H G K + C ECGK F + +LT+H + +H G ++C EC K F S L H R +H G +P+K Sbjct: 535 KPYKCIECGKSFTQKSHLRSHRGIHSGEK-PYKCNECGKVF-AQTSQLARHWRVHTGEKPYKCNDCGRAFSDRSSLTFHQ-AIHTGEKPYKCHECGKVFRHNSYLATHRR-IHTGEKPYKCNECGKAFSMHSNLTTHKV-IHTGEKPYKCNQCGKVFTQNSHLANHQRT-HTGEKPYRCNECGKAFSVRSSLTTHQ-AIHTGKKPYKCNECGKVFTQNAHLANHRRI-HTGEKPYRCTECGKAFRVRSSLTTH-MAIHTGEKRYKCNECGKVFRQSSNLASHHR-MHTGEKPYK 818 HSP 6 Score: 216.468 bits (550), Expect = 1.276e-59 Identity = 140/375 (37.33%), Postives = 196/375 (52.27%), Query Frame = 2 Query: 812 GYKYRCKQCDKGYNAKNAFIQHHKDIHKDLRPFKCDECHKAFSSETYLTIHQRTVHEGVKPFECKECGKCFAEKRQLTSHHRFVHESIKPYKCQECGKCFATKSYLKRHKLTVHDGIKAFECQECAKSFATKSFLVRHQRTVHQGINPFECQECAKSFATKSCLARHQRTIHEGIRPFKCQECGFFFGRKYDLVRHHRIVHEGIKAFECQECGKCFVEKRNLTSHQLTVHEGINPFECQECAKSFATKSCLVRHQRTIHEGIRPFKCQ*CGNCFAE----------------------KKTINFSSQICP*KCI----KPY*CQECGKCFATKSYLKLHKLLVHDEIKDFVCQECGKCFAAKSYLKRHKLTVHDG 1858 G Y C Q +K N ++ + + I ++ + + H+ + L +R + KP++C ECGK F + LTSH R +H KPYKC ECGK F +S L H++ +H G K ++C EC K F S+L H+R +H G P++C EC K+F S L HQ IH G +PFKC ECG F + L+ H RI H G K ++C ECGK F + +L HQ T+H G P++C EC K F S L RH+R +H G +P+KC CG F+ K +SQ+ + I KPY C ECGK F+ +S L H+ +H K + C ECGK F KS+L+ H+ +H G Sbjct: 199 GKMYECNQVEKSTNNGSS-VSPLQQIPSSVQTHRSKKYHEL--NHFSLLTQRRKANSCGKPYKCNECGKAFTQNSNLTSHRR-IHSGEKPYKCSECGKTFTVRSNLTIHQV-IHTGEKPYKCHECGKVFRHNSYLATHRR-IHTGEKPYKCNECGKAFRGHSNLTTHQ-LIHTGEKPFKCNECGKLFTQNSHLISHWRI-HTGEKPYKCNECGKAFSVRSSLAIHQ-TIHTGEKPYKCNECGKVFRYNSYLGRHRR-VHTGEKPYKCNECGKAFSMHSNLATHQVIHTGTKPFKCNECSKVFTQNSQLANHRRIHTGEKPYKCNECGKAFSVRSSLTTHQ-AIHSGEKPYKCIECGKSFTQKSHLRSHR-GIHSG 561 The following BLAST results are available for this feature:
BLAST of TCONS_00057725 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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