TCONS_00057704 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057704
Unique NameTCONS_00057704
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length290

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057704 ID=TCONS_00057704|Name=TCONS_00057704|organism=Clytia hemisphaerica|type=transcript|length=290bp
GGACAcggcttattttttcttctattctcATCGCAATATTTGAGTTTCTC
GGAGTTAtggatgagaaaaaaattataaacacaaaaacagaaaaacatgG
CGAGGACTTCTCCAACATTTTTTGCTAAACTCCATAAACTGAGAAGAGAA
gttttttaatgcttttaaatgtttataaacacAGAGTTAAACTGTCTTGG
CATTATCTATCTGAGATACTTTATTCATACATTGTTTCTGGCTTGGTTGG
GACGTTGATTtattcacaaaaacaaacaaactcatATATG
Run BLAST on NCBI

transcript from alignment at scaffold_297:8499..8788

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057704 ID=TCONS_00057704|Name=TCONS_00057704|organism=Clytia hemisphaerica|type=transcript|length=290bp|location=Sequence derived from alignment at scaffold_297:8499..8788 (Clytia hemisphaerica)
CATATatgagtttgtttgtttttgtgaataAATCAACGTCCCAACCAAGC
CAGAAACAATGTATGAATAAAGTATCTCAGATAGATAATGCCAAGACAGT
TTAACTCTgtgtttataaacatttaaaagcattaaaaaacTTCTCTTCTC
AGTTTATGGAGTTTAGCAAAAAATGTTGGAGAAGTCCTCGCcatgttttt
ctgtttttgtgtttataatttttttctcatccaTAACTCCGAGAAACTCA
AATATTGCGATgagaatagaagaaaaaataagccgTGTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036385XLOC_036385Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057704-exon-scaffold_297-1491911889:8499..8788TCONS_00057704-exon-scaffold_297-1491911889:8499..8788Clytia hemisphaericaexon
TCONS_00057704-exon-scaffold_297-1510915933:8499..8788TCONS_00057704-exon-scaffold_297-1510915933:8499..8788Clytia hemisphaericaexon
TCONS_00057704-exon-scaffold_297-1575043694:8499..8788TCONS_00057704-exon-scaffold_297-1575043694:8499..8788Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_297supercontigscaffold_297:8499..8788 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.48984	1.70157	3.62977	1.44968	5.88281	2.32434	3.9259	3.15032	2.57322	1.82134	2.65176	0.581053	1.16049	0	0.495412	0.797479	0.327476	0	1.85489	0.970504	1.26532	4.20071	2.22911	3.54528	1.87344	1.8055	1.94837	6.3837	3.87345	3.00215
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057704 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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