|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057676 ID=TCONS_00057676|Name=TCONS_00057676|organism=Clytia hemisphaerica|type=transcript|length=2418bpRun BLAST on NCBI protein sequence of TCONS_00057676-protein >TCONS_00057676-protein ID=TCONS_00057676-protein|Name=TCONS_00057676-protein|organism=Clytia hemisphaerica|type=polypeptide|length=494bp MGRNTIVEYYGERPFQKCGYCKGRKCKINHVEFFGREETGHRCGYCKSKERun BLAST on NCBI transcript from alignment at scaffold_297:22990..30535- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00057676 ID=TCONS_00057676|Name=TCONS_00057676|organism=Clytia hemisphaerica|type=transcript|length=7546bp|location=Sequence derived from alignment at scaffold_297:22990..30535- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_297:22990..30535- >TCONS_00057676 ID=TCONS_00057676|Name=TCONS_00057676|organism=Clytia hemisphaerica|type=CDS|length=22275bp|location=Sequence derived from alignment at scaffold_297:22990..30535- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00057676 vs. Swiss-Prot (Human)
Match: ATE1 (Arginyl-tRNA--protein transferase 1 OS=Homo sapiens GN=ATE1 PE=1 SV=2) HSP 1 Score: 384.415 bits (986), Expect = 2.692e-123 Identity = 224/524 (42.75%), Postives = 294/524 (56.11%), Query Frame = 1
Query: 469 VEFFGREETGHRCGYCKSKESSIADGMWAHYLTCQDYQDLLDRGWRRSGKYCYKPIMDRTCCPQYTIRLDVTNAKLRKSQKKVIKNFNKYLTTGICPK-----QP--SKTDQKASGG------------------------------------GEVDEDNNCIDEPCGGAREVKAPKMDISFTGGIVNGADPSKPKCRKAKEVRKERKQMK-------------QKVNTPHEQITSKQNKNKEKTYEEWI-DGVPEDAKIKFEVKLVRCCPEDEDFKQTFRQELEVYQKYQIEIHKDDPDEVDERQFRRFLCEGPLVPVYGXXXXXXXXXINGIPSCGLGAFHQQYYLDGRLVAVGVLDILPNIVSSKYLFYDPEYQFLSLGTYSALREIYFIRSLYRESLSIKYYYMGFYIHSCLKMKYKGSFFPSYLLCPETYMWKSIEDCFEKLDASKYARLEEDKNKVAE-QVNASDSL-ILHKGRAMPFQVFISLVSSESEISDHKNTVEEYTTLVGEAC-KSILLFRS 1860
V++F E+ +RCGYCK++ S ++GMWAH +T QDYQDL+DRGWRRSGKY YKP+M++TCCPQYTIR + KS KKV+K K+L G PK +P S D +G E+ + + + E G + K+ G GAD SKP CRKAKE+RKERK++K Q P K N+ K+ E+ I + +PE+A K EV++VR P FK T + +VY++YQ+ IHK+ PD E QF RFLC PL + + NG P CG G+FHQQY+LDG+++AVGV+DILPN VSS YL+YDP+Y FLSLG YSALREI F R L+ ++ + YYYMGFYIHSC KMKYKG + PS LLCPETY+W IE C L+ SKY R +D V E + D L + HK MP+ V+ SE + V +Y +LVG+ C + +LLFR+
Sbjct: 12 VDYFPSEDF-YRCGYCKNESGSRSNGMWAHSMTVQDYQDLIDRGWRRSGKYVYKPVMNQTCCPQYTIRCRPLQFQPSKSHKKVLKKMLKFLAKGEVPKGSCEDEPMDSTMDDAVAGDFALINKLDIQCDLKTLSDDIKESLESEGKNSKKEEPQELLQSQDFVGEKLGSGEPSHSVKVHTVPKPG--KGADLSKPPCRKAKEIRKERKRLKLMQQNPAGELEGFQAQGHPPSLFPPKAKSNQPKSLEDLIFESLPENASHKLEVRVVRSSPPSSQFKATLLESYQVYKRYQMVIHKNPPDTPTESQFTRFLCSSPL---------EAETPPNG-PDCGYGSFHQQYWLDGKIIAVGVIDILPNCVSSVYLYYDPDYSFLSLGVYSALREIAFTRQLHEKTSQLSYYYMGFYIHSCPKMKYKGQYRPSDLLCPETYVWVPIEQCLPSLENSKYCRFNQDPEAVDEDRSTEPDRLQVFHKRAIMPYGVYKKQQKDPSE----EAAVLQYASLVGQKCSERMLLFRN 518 The following BLAST results are available for this feature:
BLAST of TCONS_00057676 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.