TCONS_00057660 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057660
Unique NameTCONS_00057660
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length974

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057660 ID=TCONS_00057660|Name=TCONS_00057660|organism=Clytia hemisphaerica|type=transcript|length=974bp
AGCTCTTGCAGTAAAAAGTAGTAAATTTCTCTTGCGAGACATTAAGATCA
GTTAGACAGGTCCTGATAACCATCAAGCGAAAAGAGGCTGGAAATTATTC
AAAGAATCATTCATTTGAAAAACAATGGCGTATTCAATCTTCACTCGTGA
CGACATTGCAGACTTCAAAGAAGTTTTCGAATATTTTGACAAAAGGAACA
GAGGTCACATCACTAGAAAACAAATGGTGACAACATTGAGATCACTCATC
CCAAAGCCTAAAGAAAATGACATAACATGCCTTATGgaaaatatatcatt
taaaaATACAGTCAATTTTCGAGAATATTTGGATATTCTTCATGCGACAA
TTGAAAGTAATCGCAAGAAACAGATACATGATAAAAAACCACGAAGAAAA
AGGAGTCATTATACAAACCTAACACAAGACCAGCTGAATGACATCCGTGA
CACATTCACGTTATTCGATCGTGACGGTGATGGCACCATATCTGTCCACG
AGTTACAAgacatgatgacgtcattgggaCAACGGGTAAGCGAGGCAGAC
ATCAAAGAAATGTTGGAGGATACAGATACATCAGCAGATGGTACACTCGA
TTACCCAGCATTCATGAGCATGATGACACGCAAAAGTGCAAACAATGATC
TGAACTGTGAAATTAAAGAGGCCTTCAAATTCTTTGATCAAGACGGGGAT
GGTACAATaacaaaagaagaattgaaaatCTGTATGAAACGTATTGGTGA
AGACTTATCTGACGAAGATCTTAATGAAATGCTCAATGAAGCAGATTTAG
ACGGGAACGGAAAAATTGAGTTTCATGAATTTGCAAAGCTGATCACATGG
CCAAAATCATGATTGCTCCTTgatcttttgtatttttatctttatgacct
ttattttatgaaaatgtaAATAATTATTGACATCAACATCAATATATTTT
GTATTAATAAAAATCTAGTTAAAT
Run BLAST on NCBI

protein sequence of TCONS_00057660-protein

>TCONS_00057660-protein ID=TCONS_00057660-protein|Name=TCONS_00057660-protein|organism=Clytia hemisphaerica|type=polypeptide|length=245bp
MAYSIFTRDDIADFKEVFEYFDKRNRGHITRKQMVTTLRSLIPKPKENDI
TCLMENISFKNTVNFREYLDILHATIESNRKKQIHDKKPRRKRSHYTNLT
QDQLNDIRDTFTLFDRDGDGTISVHELQDMMTSLGQRVSEADIKEMLEDT
DTSADGTLDYPAFMSMMTRKSANNDLNCEIKEAFKFFDQDGDGTITKEEL
KICMKRIGEDLSDEDLNEMLNEADLDGNGKIEFHEFAKLITWPKS
Run BLAST on NCBI

transcript from alignment at scaffold_297:171743..174465+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057660 ID=TCONS_00057660|Name=TCONS_00057660|organism=Clytia hemisphaerica|type=transcript|length=2723bp|location=Sequence derived from alignment at scaffold_297:171743..174465+ (Clytia hemisphaerica)
AGCTCTTGCAGTAAAAAGTAGTAAATTTCTCTTGCGAGACATTAAGATCA
GTTAGACAGGTCCTGATAACCATCAAGCGAAAAGAGGCTGGAAATTATTC
AAAGAATCATTCATTTGAAAAACAATGGTGAGTTTACTTTTCAATAgtgt
aaattaaatttggctTGGGAAATTTCAACAATTATAATAGGTATCTAATT
TCAGAGTTATGGAAGTCTCTTTGAAAAGACGTATATGATTTTTAGAATCA
GATAAATTTCCATGATAAATCTATGAAGTTCTTTGACTTAAATGTGAGAA
GATGTAGATACAAAGCTATTAAAGGGAACATTTAAGAATCGATAATGAGC
GAACTCTTGATTGTGTTACCGTGTGATGTTATAAAATATCACcagtttga
aaacgaggcaagtaTCAATAAGTTTGAGTTTTTCGGATAACTGGATAAAC
GAATAAATGTTCTGTTCAAAAGAAGATAAGCAGTAGCGTAGataggaggg
gcgcaaaatttgtgtaggagagcagatttttacgacactgtaattatcta
ttcatagtataaaaagatcattactgtgtcataaaaatctgctctcctac
ataaattttgcgccccctttgtctacgctactgataAGCAAGGTTAGTAA
GCAATTAAAAGAGAGCAGATATTAAAAGATCTAGTATTTTTGAGATTGGA
TATCCAGGATTTCTGTGGAAGATCAGTGTTCAATGCCCAATCTCCAGAAC
ATTGAAACTTAAAAGTATTCTTacctttttctcaaaattcagGCGTATTC
AATCTTCACTCGTGACGACATTGCAGACTTCAAAGAAGTTTTCGAATATT
TTGACAAAAGGAACAGAGGTCACATCACTAGAAAACAAATGGTGACAACA
TTGAGATCACTCATCCCAAAGCCTAAAGAAAATGACATAACATGCCTTAT
GgaaaatatatcatttaaaaATACAGTCAATTTTCGAGAATATTTGGATA
TTCTTCATGCGACAATTGAAAGTAATCGCAAGAAACAGATACATGATAAA
AAACCACGAAGAAAAAGGGTATGCTATAGAAtattgtttgtcttttcaat
gAGGAGGAGCTGGCCCTCGGTTAAGTTGTTGcgcttttgttgttttgaac
tTTTGATAATTAGCTTTTTATGGCTCGGCCGTCTAAATCAGGGTTCTGTA
CTGAAAAACACCTGATAAATTTGTTCATGTATATATGACATCGTCGTGTC
TGTAAACTTGTCCCGGTCGTTtgccaaacttattcaaattcttAAACCAT
TGAAAATAATGCGATCGTttcactaaatatttcctttataCCGAAGATAA
ATTAAAATTGCTTTAGTATTAGAATATAAATTTAACACTATATTATTCTT
AGAGTCATTATACAAACCTAACACAAGACCAGCTGAATGACATCCGTGAC
ACATTCACGTTATTCGATCGTGACGGTGATGGCACCATATCTGTCCACGA
GTTACAAgacatgatgacgtcattgggaCAACGGGTAAGCGAGGCAGACA
TCAAAGAAATGTTGGAGGATACAGATACATCAGCAGATGGTACACTCGAT
TACCCAGCATTCATGAGCATGATGACACGCAAAAGTGCAAACAATGATCT
GAACTGTGAAATTAAAGAGGTAAAAgttatctttgattttttcaagcCCA
TGAATTAAATCACTCGAAATTCAGTATAAATTAGAAGCCTATTTTCAACA
AGCAAACGGTTCTATCTTAGAGTGATCTTGGTTTAATCAAGTCTCTCAGT
GAGAAAATTGGTCTAGATTCTACATACACTATAATAAACGTACTAATTTT
TTCCCATCACNTTGATCTAGATTCTACATACACTataataaaagtaaaaa
ctttTTCCCATCATAGGCCTTCAAATTCTTTGATCAAGACGGGGATGGTA
CAATaacaaaagaagaattgaaaatCTGTATGAAACGTATTGGTGAAGAC
TTATCTGACGAAGATCTTAATGAAATGCTCAATGAAGCAGATTTAGACGG
GAACGGAAAAATTGAGTTTCATGGTAAGACTTATACTAATTATCAgaata
cacctatcaacccttaACAGTGCAGCCAACTTTTGACTGTTTTTGGGTTT
CCAGCATCCAAGGAAACACTTCTTGTCTCCTTCCTTGTTGAGGGGACTGG
TGATGAATTTACAAGAAAATAATGTCGAAATTCTTTGCCTATAAGAATGT
CAACGCAACCACTCGGACTTTTTGACATCAATGCTTCCTGGAAACTCAAG
CCAAGTCTCCCGCCAATTTAAAACTTGATATAAGAACTAAACTCTTAGTA
CTTTTGTTTAATTTGTATAAAAGATTCTGTCAGACAAAAGTTCTTATATC
AGTGCTTTCCAAATCATAAATGCTTTAAATTCATAAAGTTATTACCAAAT
AGAATGCTTATTGATAGCAGAATAAGGCNtaaattcaaaaagttattaCC
AAATAGAATGCTTATTGATAGCAAAATAAGGCTTTTTACTGAAATTATCA
CACATTTATTTTTTCTACTACTTTAGAATTTGCAAAGCTGATCACATGGC
CAAAATCATGATTGCTCCTTgatcttttgtatttttatctttatgacctt
tattttatgaaaatgtaAATAATTATTGACATCAACATCAATATATTTTG
TATTAATAAAAATCTAGTTAAAT

Coding sequence (CDS) from alignment at scaffold_297:171743..174465+

>TCONS_00057660 ID=TCONS_00057660|Name=TCONS_00057660|organism=Clytia hemisphaerica|type=CDS|length=3690bp|location=Sequence derived from alignment at scaffold_297:171743..174465+ (Clytia hemisphaerica)
ATGGCGTATTCAATCTTCACTCGTGACGACATTGCAGACTTCAAAGAAGT
TTTCGAATATTTTGACAAAAGGAACAGAGGTCACATCACTAGAAAACAAA
TGGTGACAACATTGAGATCACTCATCCCAAAGCCTAAAGAAAATGACATA
ACATGCCTTATGgaaaatatatcatttaaaaATACAGTCAATTTTCGAGA
ATATTTGGATATTCTTCATGCGACAATTGAAAGTAATCGCAAGAAACAGA
TACATGATAAAAAACCACGAAGAAAAAGGAGTCATTATACAAACCTAACA
CAAGACCAGCTGAATGACATCCGTGACACATTCACGTTATTCGATCGTGA
CGGTGATGGCACCATATCTGTCCACGAGTTACAAgacatgatgacgtcat
tgggaCAACGGGTAAGCGAGGCAGACATCAAAGAAATGTTGGAGGATACA
GATACATCAGCAGATGGTACACTCGATTACCCAGCATTCATGAGCATGAT
GACACGCAAAAGTGCAAACAATGATCTGAACTGTGAAATTAAAGAGGCCT
TCAAATTCTTTGATCAAGACGGGGATGGTACAATaacaaaagaagaattg
aaaatCTGTATGAAACGTATTGGTGAAGACTTATCTGACGAAGATCTTAA
TGAAATGCTCAATGAAGCAGATTTAGACGGGAACGGAAAAATTGAGTTTC
ATGAATTTGCAAAGCTGATCACATGGCCAAAATCATGAATGGCGTATTCA
ATCTTCACTCGTGACGACATTGCAGACTTCAAAGAAGTTTTCGAATATTT
TGACAAAAGGAACAGAGGTCACATCACTAGAAAACAAATGGTGACAACAT
TGAGATCACTCATCCCAAAGCCTAAAGAAAATGACATAACATGCCTTATG
gaaaatatatcatttaaaaATACAGTCAATTTTCGAGAATATTTGGATAT
TCTTCATGCGACAATTGAAAGTAATCGCAAGAAACAGATACATGATAAAA
AACCACGAAGAAAAAGGAGTCATTATACAAACCTAACACAAGACCAGCTG
AATGACATCCGTGACACATTCACGTTATTCGATCGTGACGGTGATGGCAC
CATATCTGTCCACGAGTTACAAgacatgatgacgtcattgggaCAACGGG
TAAGCGAGGCAGACATCAAAGAAATGTTGGAGGATACAGATACATCAGCA
GATGGTACACTCGATTACCCAGCATTCATGAGCATGATGACACGCAAAAG
TGCAAACAATGATCTGAACTGTGAAATTAAAGAGGCCTTCAAATTCTTTG
ATCAAGACGGGGATGGTACAATaacaaaagaagaattgaaaatCTGTATG
AAACGTATTGGTGAAGACTTATCTGACGAAGATCTTAATGAAATGCTCAA
TGAAGCAGATTTAGACGGGAACGGAAAAATTGAGTTTCATGAATTTGCAA
AGCTGATCACATGGCCAAAATCATGAATGGCGTATTCAATCTTCACTCGT
GACGACATTGCAGACTTCAAAGAAGTTTTCGAATATTTTGACAAAAGGAA
CAGAGGTCACATCACTAGAAAACAAATGGTGACAACATTGAGATCACTCA
TCCCAAAGCCTAAAGAAAATGACATAACATGCCTTATGgaaaatatatca
tttaaaaATACAGTCAATTTTCGAGAATATTTGGATATTCTTCATGCGAC
AATTGAAAGTAATCGCAAGAAACAGATACATGATAAAAAACCACGAAGAA
AAAGGAGTCATTATACAAACCTAACACAAGACCAGCTGAATGACATCCGT
GACACATTCACGTTATTCGATCGTGACGGTGATGGCACCATATCTGTCCA
CGAGTTACAAgacatgatgacgtcattgggaCAACGGGTAAGCGAGGCAG
ACATCAAAGAAATGTTGGAGGATACAGATACATCAGCAGATGGTACACTC
GATTACCCAGCATTCATGAGCATGATGACACGCAAAAGTGCAAACAATGA
TCTGAACTGTGAAATTAAAGAGGCCTTCAAATTCTTTGATCAAGACGGGG
ATGGTACAATaacaaaagaagaattgaaaatCTGTATGAAACGTATTGGT
GAAGACTTATCTGACGAAGATCTTAATGAAATGCTCAATGAAGCAGATTT
AGACGGGAACGGAAAAATTGAGTTTCATGAATTTGCAAAGCTGATCACAT
GGCCAAAATCATGAATGGCGTATTCAATCTTCACTCGTGACGACATTGCA
GACTTCAAAGAAGTTTTCGAATATTTTGACAAAAGGAACAGAGGTCACAT
CACTAGAAAACAAATGGTGACAACATTGAGATCACTCATCCCAAAGCCTA
AAGAAAATGACATAACATGCCTTATGgaaaatatatcatttaaaaATACA
GTCAATTTTCGAGAATATTTGGATATTCTTCATGCGACAATTGAAAGTAA
TCGCAAGAAACAGATACATGATAAAAAACCACGAAGAAAAAGGAGTCATT
ATACAAACCTAACACAAGACCAGCTGAATGACATCCGTGACACATTCACG
TTATTCGATCGTGACGGTGATGGCACCATATCTGTCCACGAGTTACAAga
catgatgacgtcattgggaCAACGGGTAAGCGAGGCAGACATCAAAGAAA
TGTTGGAGGATACAGATACATCAGCAGATGGTACACTCGATTACCCAGCA
TTCATGAGCATGATGACACGCAAAAGTGCAAACAATGATCTGAACTGTGA
AATTAAAGAGGCCTTCAAATTCTTTGATCAAGACGGGGATGGTACAATaa
caaaagaagaattgaaaatCTGTATGAAACGTATTGGTGAAGACTTATCT
GACGAAGATCTTAATGAAATGCTCAATGAAGCAGATTTAGACGGGAACGG
AAAAATTGAGTTTCATGAATTTGCAAAGCTGATCACATGGCCAAAATCAT
GAATGGCGTATTCAATCTTCACTCGTGACGACATTGCAGACTTCAAAGAA
GTTTTCGAATATTTTGACAAAAGGAACAGAGGTCACATCACTAGAAAACA
AATGGTGACAACATTGAGATCACTCATCCCAAAGCCTAAAGAAAATGACA
TAACATGCCTTATGgaaaatatatcatttaaaaATACAGTCAATTTTCGA
GAATATTTGGATATTCTTCATGCGACAATTGAAAGTAATCGCAAGAAACA
GATACATGATAAAAAACCACGAAGAAAAAGGAGTCATTATACAAACCTAA
CACAAGACCAGCTGAATGACATCCGTGACACATTCACGTTATTCGATCGT
GACGGTGATGGCACCATATCTGTCCACGAGTTACAAgacatgatgacgtc
attgggaCAACGGGTAAGCGAGGCAGACATCAAAGAAATGTTGGAGGATA
CAGATACATCAGCAGATGGTACACTCGATTACCCAGCATTCATGAGCATG
ATGACACGCAAAAGTGCAAACAATGATCTGAACTGTGAAATTAAAGAGGC
CTTCAAATTCTTTGATCAAGACGGGGATGGTACAATaacaaaagaagaat
tgaaaatCTGTATGAAACGTATTGGTGAAGACTTATCTGACGAAGATCTT
AATGAAATGCTCAATGAAGCAGATTTAGACGGGAACGGAAAAATTGAGTT
TCATGAATTTGCAAAGCTGATCACATGGCCAAAATCATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036368XLOC_036368Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057660-exon-scaffold_297-1491911889:171743..171869TCONS_00057660-exon-scaffold_297-1491911889:171743..171869Clytia hemisphaericaexon
TCONS_00057660-exon-scaffold_297-1510915933:171743..171869TCONS_00057660-exon-scaffold_297-1510915933:171743..171869Clytia hemisphaericaexon
TCONS_00057660-exon-scaffold_297-1575043694:171743..171869TCONS_00057660-exon-scaffold_297-1575043694:171743..171869Clytia hemisphaericaexon
TCONS_00057660-exon-scaffold_297-1491911889:172535..172810TCONS_00057660-exon-scaffold_297-1491911889:172535..172810Clytia hemisphaericaexon
TCONS_00057660-exon-scaffold_297-1510915933:172535..172810TCONS_00057660-exon-scaffold_297-1510915933:172535..172810Clytia hemisphaericaexon
TCONS_00057660-exon-scaffold_297-1575043694:172535..172810TCONS_00057660-exon-scaffold_297-1575043694:172535..172810Clytia hemisphaericaexon
TCONS_00057660-exon-scaffold_297-1491911889:173145..173411TCONS_00057660-exon-scaffold_297-1491911889:173145..173411Clytia hemisphaericaexon
TCONS_00057660-exon-scaffold_297-1510915933:173145..173411TCONS_00057660-exon-scaffold_297-1510915933:173145..173411Clytia hemisphaericaexon
TCONS_00057660-exon-scaffold_297-1575043694:173145..173411TCONS_00057660-exon-scaffold_297-1575043694:173145..173411Clytia hemisphaericaexon
TCONS_00057660-exon-scaffold_297-1491911889:173659..173815TCONS_00057660-exon-scaffold_297-1491911889:173659..173815Clytia hemisphaericaexon
TCONS_00057660-exon-scaffold_297-1510915933:173659..173815TCONS_00057660-exon-scaffold_297-1510915933:173659..173815Clytia hemisphaericaexon
TCONS_00057660-exon-scaffold_297-1575043694:173659..173815TCONS_00057660-exon-scaffold_297-1575043694:173659..173815Clytia hemisphaericaexon
TCONS_00057660-exon-scaffold_297-1491911889:174319..174465TCONS_00057660-exon-scaffold_297-1491911889:174319..174465Clytia hemisphaericaexon
TCONS_00057660-exon-scaffold_297-1510915933:174319..174465TCONS_00057660-exon-scaffold_297-1510915933:174319..174465Clytia hemisphaericaexon
TCONS_00057660-exon-scaffold_297-1575043694:174319..174465TCONS_00057660-exon-scaffold_297-1575043694:174319..174465Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057660-proteinTCONS_00057660-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_297supercontigscaffold_297:171743..174465 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.583486	0.677153	0.278672	0.601536	0.437786	0.790729	1.62466	2.0695	0.537287	0.301579	0.281911	0.450305	11.9653	7.72337	0.178983	0.0345013	1.7288	2.0915	13.7051	13.1549	3.64131	5.05219	0.985066	0.54736	1.38825	2.31078	0.494716	0.263987	0.154422	0.123082
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
Blast
[Close]
BLAST of TCONS_00057660 vs. Swiss-Prot (Human)
Match: CALM3 (Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.932e-42
Identity = 64/143 (44.76%), Postives = 107/143 (74.83%), Query Frame = 2 
Query:  419 LTQDQLNDIRDTFTLFDRDGDGTISVHELQDMMTSLGQRVSEADIKEMLEDTDTSADGTLDYPAFMSMMTRKSANNDLNCEIKEAFKFFDQDGDGTITKEELKICMKRIGEDLSDEDLNEMLNEADLDGNGKIEFHEFAKLIT 847
            LT++Q+ + ++ F+LFD+DGDGTI+  EL  +M SLGQ  +EA++++M+ + D   +GT+D+P F++MM RK  + D   EI+EAF+ FD+DG+G I+  EL+  M  +GE L+DE+++EM+ EAD+DG+G++ + EF +++T
Sbjct:    5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMT 147

HSP 2 Score: 93.2041 bits (230), Expect = 9.840e-23
Identity = 54/167 (32.34%), Postives = 91/167 (54.49%), Query Frame = 2 
Query:  140 FTRDDIADFKEVFEYFDKRNRGHITRKQMVTTLRSLIPKPKENDITCLMENISF--KNTVNFREYLDILHATIESNRKKQIHDKKPRRKRSHYTNLTQDQLNDIRDTFTLFDRDGDGTISVHELQDMMTSLGQRVSEADIKEMLEDTDTSADGTLDYPAFMSMMTRK 634
             T + IA+FKE F  FDK   G IT K++ T +RSL   P E ++  ++  +      T++F E+L ++       RK +  D +                 +IR+ F +FD+DG+G IS  EL+ +MT+LG+++++ ++ EM+ + D   DG ++Y  F+ MMT K
Sbjct:    5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMA------RKMKDTDSE----------------EEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149
The following BLAST results are available for this feature:
BLAST of TCONS_00057660 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CALM31.932e-4244.76Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1[more]
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