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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057653 ID=TCONS_00057653|Name=TCONS_00057653|organism=Clytia hemisphaerica|type=transcript|length=2040bp
CTGAATGAAACCATAAACCATGTACATTAAATTGGCGTCAACAGAGTCAT
TGATGAATGAAGTACGGGTCAGCAACCGATCTTCGAATCTGATGGTCAAT
GGGGATGTCATGAAGATATCCAAAGATTGGATGAAAAACGCAGATGTCGT
CAAAAGTCTTAGAAACCCAGgtTTTGCTGGAATACACGACATTGAGAAGT
ATTTCAAGTCAATCAATTTGAAACTTGGTCAGAAACGAGTAGGGAAAGCT
TTCGTTGTTTTTGGGATTCCAACCGTCAAGAGAAGTAAAGCTTATTACGT
CATCCAAACGGTATCTTCCTTGCTCAAACacatgaaaatttcagaaagga
AAAATGTTGTCATCGTCATTTTTGTGGCAGATCTTGACGATAATTTTCTT
AGGAAAGTCGTAAAAGATGTTCGACAGGACTTTACAGGCGAAGTTAAAGA
CGGTATCATTCAAGTGGTTGCTCCTGATAAAGCCTACTATCCTAAGAATC
TGGATAATTTGCCAAGACTTTTTGGTGATGAACAAGATCGAGTCCGCTGG
AGATCGAAGCAGTGCCTCGATTATTCATATTTGTATTATTACTGTAAAGA
TATGGCGCAATATTTTGTTCAGCTTGAAGATGATATAATTGCTGTTGATG
ATTATATGGGGAAAATGCGGGAATTTATAACGAAAAACGAGAAACTTCGT
TGGTCGGTCCTTGAGTTCGGTGCCCGAGGATTTATCGGAATGACTTATCG
GGGAGAACATCTAGAATCGTTGGCAAAGTTTACCAGATATTTCTTTTGGA
CCATGCCAGTCGACTGGCTTTTTCGAGTTTATAACAATAtctttttatat
caaaatccTAAGAGCTTTCGTACAAGCGAACCTTTGTTCTTACATATCGG
AAAGTTCTCTTCCTTAGATGGCCAAACGAGGTCAAATCTTATAGATCTGC
CACTGGTCGGGAGACGTCGATTTCAATTGAGAAACGGAAATCCACCAGCT
ATCATCAAGTCTGACTTGAAAGACTTTTATATGAAGAATTTCTTAGAAAA
CCCATATTCCAAAAAAGGGGCGATGTGGAGTAAAACACCTCACAATGGAG
ATACTATTACAATTATGTTTAATTCGactcaaaaagtcaaaagaatTGTT
TTCGTCAGTGGGTTAGAAGATTATAAAAAAGACAGCTTCTATGAAACTGA
ATTATACATCTCTCAAATGAGAGGTAATGCGAATTCGAAATGTGGGAAGT
TTGAGCTGGTGAAATTTTACAAAGAAGCAATAGTTGATATTACTTTTGAT
GAACCTAAAGAAAACGTTTGGTGTGTCAAACTGGAGTTGACAACTGTCAA
GAAAACGAAAGGAATTCCAAACTGGTTGATTATTGAAGAAATTGCTATTC
TTATTAGTTGATTTACAATATTTATATACTAAGTGTATAACTACTATGTT
TCGTCCTTTGGGCTTAGAATTCAATCTTATTACcctcccccaccatccaa
agggctttatTGTGCacatcataagccctttgggTAGTAAAGGGGAAACT
ATAGACTGGTTTAATCccaaagaacgaaaaattgcCCTTTAAGACCGATC
AAAACTCGAAAAATCGCATATTtcatgttttgtgacgtcatttgggcccT
ACATTACGTCATTGAAAGGGTAATAAATTCTttacttcactgaaatcaat
ttgtcatttaccCAAAAGATTCTCTCAATGACTTCCGATCCAATGCGGGG
TCAtccattgcttaaatccttctcaaactcgaaatattgtatttttcagg
ttttgataACGTCATTGGACCCAAAATGTCTCAATTTGGATATATCATTT
TTCgaaagtttctatatacccACTCTGACCCCTCCAATTTATTCTCTATT
AAATTCTAGATCCAATGAGGgttcaacgacctcccaaccgCTATTCAATC
GCGCGATATCAcaattttcctgttttgatgacgtcttcaactgaaaacgc
ctgaaaatttagtcaaattataaagtcacactcaagcctt Run BLAST on NCBI transcript from alignment at scaffold_297:89490..96813+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057653 ID=TCONS_00057653|Name=TCONS_00057653|organism=Clytia hemisphaerica|type=transcript|length=7324bp|location=Sequence derived from alignment at scaffold_297:89490..96813+ (Clytia hemisphaerica)
CTGAATGAAACCATAAACCATGTGTAAGGATATTTATTTGGAAAAAGTCT
TTCTGTTGAATATCATGATGTTCTTTTGTCAAAGAGAAACCAAAAAACTA
CAGCAGAGCCTATTTGGAAGTTTTGGTAGACAAAATCTGAAGGAAATCAA
TATGTAAGGATATTTATTTGGAACAAGTCTTTCTGTCGAATATCATGACG
TTCTTTGTCAAAGAGAAACCACAATACTACAGCAGagactctttaactcg
aacctctataactcgaagtTCTCCTTcactcgtcccttcagttaacaatg
cctttatAAATCTTActcaataactcgaaatttgtgtttctcgtGTGGGT
TCGAGTTATGGTGACTTCGCTGCTCTAGATAGACCTGCTACGAAAATGGT
GATCACAATTAAATAACTAATTACACAATTGATTAAGATAATTCTCTGCA
GAACATTTTTAGCTGGATCATGTAAATNAGACCTGCTACGAAAATGGTGA
TCACAATTAAATAACTAATTACACAATTGATTAAGATAATTCTCTGCAGA
CCATTTTAGCTGGATCATGTAAATCAAGGAAGTATAAATTTGATCTGAAT
ATGGCTGGCCGTATGTAGCAAAATTCAAtactttcatatttttcattcaa
tctcCAATATTTGTAATCTTCCATAGCTACATTAAAAGATTATTGCCAGC
ATAAAAATTTGTTgccaataaaataaatattgcaaataacatttttttct
tattcaaaatgttttcagTAAACGTTGAATCTTTATTGGCAAAAATTATT
GAAGGAAAATATTAAATAATTGAACATGAATatggaaaattgaatataaa
tattagaaattgaatataattaatatggaaattgaatataaatattgaat
tttgctAGGGCTCTGATCTGTATTGAATTTTCATATTTATCGTGTATAAA
ATGGGTTGTACATAAACAGCAAAACCATGacatattatatattttctgtT
AGGATAACTATGCCTGGatctaaaaaagtaaaaagttgcgatgataaaaa
tttgatgaagatgaaaatgaagacttttgtaaagaagaatatttcaagtt
tGAGGACCTTACTTTCGGTGAagagaaaacattttgaaaaaagattttga
acataaaatatattttagggAAATCTTTcgtttcaaaatcttgaaaataa
tgGTTATTGACCaaattttcgttctattttttcgttcaaaaagaatcata
acttttgatacatcaatttagaaaattggTCCGAAAGATTTTAGATGGTC
TTTAGAAAAAATTCggaacaaaaaggttaattacccattaaaactaagca
cttttttaaaAGAGGGTACAAAATTTTTTAAGGTTAACTTTTTAAGGTCC
ATCTAAAATTGTTCCGAAAATTTTTAGACGGTTTTaaggttcataacgtc
atttttgtaaattgcTAATTACTCTTCAAAAGGAGCTTCAAACAAAAGTT
CTGTATTCAAAACTCGTAACCGGCTCATAACCGATCTCTTGaccatggtc
agagcccttaaatgtgATTTCATTGTTCTTTGTTTCGAGGAATTTTCATT
AAGAGCTTTCATATGACCAAATATATTAATTGAATTGCATCAATCATCAT
TTTACTgtgtttttaatggaacagaTTAATTAGGCCTAGAAAATGCTTTG
AAGAGTTTTTGTTTTATGTAAGTGTAGTATTAGAAACATCGAATAAATTA
GATGAGTCACTCTGATCggcttgtatttttgaagaaatttctcATCGTCA
AATGCTAAAGCTAGATCTAAGGCAACTGGATGTCATATATCTTTCTTTCT
GATGTGGTAAAACAATCAGGCTATATAGTTGCGATAAAAACCGNGAATTT
TCATATTTATCGTGTATAAAATGGGTTGTACATAAACAGCAAAACCATGa
catattatatattttctgtTAGGATAACTATGCCTGGatctaaaaaagta
aaaagttgcgatgataaaaatttgatgaagatgaaaatgaagacttttgt
aaagaagaatatttcaagtttGAGGACCTTACTTTCGGTGAagagaaaac
attttgaaaaaagattttgaacataaaatatattttagggAAATCTTTcg
tttcaaaatcttgaaaataatgGTTATTGACCaaattttcgttctatttt
ttcgttcaaaaagaatcataacttttgatacatcaatttagaaaattggT
CCGAAAGATTTTAGATGGTCTTTAGAAAAAATTCggaacaaaaaggttaa
ttacccattaaaactaagcacttttttaaaAGAGGGTACAAAATTTTTTA
AGGTTAACTTTTTAAGGTCCATCTAAAATTGTTCCGAAAATTTTTAGACG
GTTTTaaggttcataacgtcatttttgtaaattgcTAATTACTCTTCAAA
AGGAGCTTCAAACAAAAGTTCTGTATTCAAAACTCGTAACCGGCTCATAA
CCGATCTCTTGaccatggtcagagcccttaaatgtgATTTCATTGTTCTT
TGTTTCGAGGAATTTTCATTAAGAGCTTTCATATGACCAAATATATTAAT
TGAATTGCATCAATCATCATTTTACTGTGTCTTTAATGGAACAGATTAAT
TAGGCCTAGAAAATGCTTTGAAGAGTTTTTGTTTTATGTAAGTGTAGTAT
TAGAAACATCAAATGAATTAGATGAGTCACTGATCggcttgtatttttga
agaaatctCTCATCGTCAAATGTTAAAGCTGAATCTAAGATAACTGGATG
TCATAAATCTTTCTCTTTAATGTGGTAAAACAACCAGGCTATATAGTTGC
GATAAAAACGTGAAATTCGTGAAATTTTCATAACTTCTTACTTTGCTTTA
ATAGTGATTGggaattataattttttatctaCTCTATGAATCAAAGCAGA
ATAATTTGTGGATAAATAAGTAAAGAAATCATTCATGATGTGGAATACAA
TGTTCATCAGAaagatttttcatgttttgcaAGTTTTCATGTTCATTTTT
ATAATCGTTGTTAATGTGTCGTTTATTTTCCGTCGTTCTACAGAATCAGG
TATGATCCACTTTCTAATATTGCAATAATTGCCCTTAATCATCCATACAA
AATACTGTATCTGTACCCAGGGGCTGACCTGGACGGCCGACGGAGAcatg
ccgctggagtttgaaaaattgactCTGTCAAACATTTAGAtatgaatcaa
aaattttctcccaCTCAATTTATTCTCCTATGTCAAATCTGCATCTTGAA
AGTAATTAAGTTTAATATCATGCCAGAATATCTTCACATCCCTGCATCAC
TGCATCTGCATGACAATATAACTAAACCATTAGTTAGCTCAGGCCGTAAG
ACAGTTCAACGGCGATGCAAAAAAGAGTCTCAATCTAGCCAATATACCAA
ACAGAtttctaatttcaaaaaaatgtttaactcAATTCAGCTTTAGCTTC
GAACCCAAACTCCTTCTCATATAAATTATAATCCAAGTAAGTCTTTCATG
AATGTTTTTGGATTGCTTTCTAGCGTAATGATAGATATCTCTAGGCGGGT
TTTCTCATTAATGACTTGTTTTTTATCAACACTTGATCTCACTTAATTTA
AGACATTAAATTGGCGTCAACAGAGTCATTGATGAATGAAGTACGGGTCA
GCAACCGATCTTCGAATCTGATGGTCAATGGGGATGTCATGAAGATATCC
AAAGATTGGATGAAAAACGCAGATGTCGTCAAAAGTCTTAGAAACCCAGG
TCTAGTTCACTATAATTACTactatattttaaaattatcatgAAATGTCA
TTGAAAACAACCCtctgtcacagacccgctgggaccccagccctactgga
aaatttgggaagAATTTCGtacccggtgggaaaataccctagaatttcag
ccccactgggaaactgacttttatttcatccctattcaaaaaaattcagt
atttcaaaattgcacttaaaaaccatccccactaaattttttaaccttgg
aacaatagaatttctatacctattgggattttgatagaaattttgatTCC
CGatgagaaaaaagttccaccggggctgttaGACAgggtatttgaaaata
ttaaagtgAAACCTTTCAAGTAACGAAGTCAACTTTTCAAGCGGTTGCTT
TCCTGGCTATTACATAAACCTATCATCAATATTGTTGTTGATTTTTCGGA
ATAAAGGAGTCAACAAATGATCATATTCATCTAAATCTGAGGTTCGGGAC
TTAAAAGTAAAATCCTTCTAGGTACACCTCCAAATGTAGATTGTAGACAT
ATAAGACAAAACATTCTACTCAGGACCATATAGAAGGAATCCTAACTTGA
TAAATATTCAATACCTTAAACTATTTGATATTGTAACCTTCTAatatgat
tttcttttcttttcaaaaggtTTTGCTGGAATACACGACATTGAGAAGTA
TTTCAAGTCAATCAATTTGAAACTTGGTCAGAAACGAGTAGGGAAAGGTA
AAATTATCTCCATACAAATATTTATCCAGTCACTTCAATCTTTCCCAAAG
GCCAAACTTCAATGCAGGCAGCCTATCAAGGAAATGCACGGACGAATCCT
TATGTATCCTATGAATTTCTATCTTTCAGCTTTCGTTGTTTTTGGGATTC
CAACCGTCAAGAGAAGTAAAGCTTATTACGTCATCCAAACGGTATCTTCC
TTGCTCAAACacatgaaaatttcagaaaggaAAAATGTTGTCATCGTCAT
TTTTGTGGCAGATCTTGACGATAATTTTCTTAGGAAAGTCGTAAAAGATG
TTCGACAGANAATTGCACttaaaaaccatccccactaaattttttaacct
tggaacaatagaatttctatacctattgggattttgatagaaattttgat
TCCCGatgagaaaaaagttccaccggggctgttaGACAgggtatttgaaa
atattaaagtgAAACCTTTCAAGTAACGAAGTCAACTTTTCAAGCGGTTG
CTTTCCTGGCTATTACATAAACCTATCATCAATATTGTTGTTGATTTTTC
GGAATAAAGGAGTCAACAAATGATCATATTCATCTAAATCTGAGGTTCGG
GACTTAAAAGTAAAATCCTTCTAGGTACACCTCCAAATGTAGATTGTAGA
CATATAAGACAAAACATTCTACTCAGGACCATATAGAAGGAATCCTAACT
TGATAAATATTCAATACCTTAAACTATTTGATATTGTAACCTTCTAatat
gattttcttttcttttcaaaaggtTTTGCTGGAATACACGACATTGAGAA
GTATTTCAAGTCAATCAATTTGAAACTTGGTCAGAAACGAGTAGGGAAAG
GTAAAATTATCTCCATACAAATATTTATCCAGTCACTTCAATCTTTCCCA
AAGGCCAAACTTCAATGCAGGCAGCCTATCAAGGAAATGCACGGACGAAT
CCTTATGTATCCTATGAATTTCTATCTTTCAGCTTTCGTTGTTTTTGGGA
TTCCAACCGTCAAGAGAAGTAAAGCTTATTACGTCATCCAAACGGTATCT
TCCTTGCTCAAACacatgaaaatttcagaaaggaAAAATGTTGTCATCGT
CATTTTTGTGGCAGATCTTGACGATAATTTTCTTAGGAAAGTCGTAAAAG
ATGTTCGACAGGACTTTACAGGCGAAGTTAAAGACGGTATCATTCAAGTG
GTTGCTCCTGATAAAGCCTACTATCCTAAGAATCTGGATAATTTGCCAAG
ACTTTTTGGTGATGAACAAGATCGAGTCCGCTGGAGATCGAAGCAGTGCC
TCGATTATTCATATTTGTATTATTACTGTAAAGATATGGCGCAATATTTT
GTTCAGCTTGAAGATGATATAATTGCTGTTGATGATTATATGGGGAAAAT
GCGGGAATTTATAACGAAAAACGAGAAACTTCGTTGGTCGGTCCTTGAGT
TCGGTGCCCGAGGATTTATCGGAATGACTTATCGGGGAGAACATCTAGAA
TCGTTGGCAAAGTTTACCAGATATTTCTTTTGGACCATGCCAGTCGACTG
GCTTTTTCGAGTTTATAACAATAtctttttatatcaaaatccTAAGAGCT
TTCGTACAAGCGAACCTTTGTTCTTACATATCGGAAAGTTCTCTTCCTTA
GATGGCCAAACGAGGTCAAATCTTATAGATCTGCCACTGGTCGGGAGACG
TCGATTTCAATTGAGAAACGGAAATCCACCAGCTATCATCAAGTCTGACT
TGAAAGACTTTTATATGAAGAATTTCTTAGAAAACCCATATTCCAAAAAA
GGGGCGATGTGGAGTAAAACACCTCACAATGGAGATACTATTACAATTAT
GTTTAATTCGactcaaaaagtcaaaagaatTGTTTTCGTCAGTGGGTTAG
AAGATTATAAAAAAGACAGCTTCTATGAAACTGAATTATACATCTCTCAA
ATGAGAGGTAATGCGAATTCGAAATGTGGGAAGTTTGAGCTGGTGAAATT
TTACAAAGAAGCAATAGTTGATATTACTTTTGATGAACCTAAAGAAAACG
TTTGGTGTGTCAAACTGGAGTTGACAACTGTCAAGAAAACGAAAGGAATT
CCAAACTGGTTGATTATTGAAGAAATTGCTATTCTTATTAGTTGATTTAC
AATATTTATATACTAAGTGTATAACTACTATGTTTCGTCCTTTGGGCTTA
GAATTCAATCTTATTACcctcccccaccatccaaagggctttatTGTGCa
catcataagccctttgggTAGTAAAGGGGAAACTATAGACTGGTTTAATC
ccaaagaacgaaaaattgcCCTTTAAGACCGATCAAAACTCGAAAAATCG
CATATTtcatgttttgtgacgtcatttgggcccTACATTACGTCATTGAA
AGGGTAATAAATTCTttacttcactgaaatcaatttgtcatttaccCAAA
AGATTCTCTCAATGACTTCCGATCCAATGCGGGGTCAtccattgcttaaa
tccttctcaaactcgaaatattgtatttttcaggttttgataACGTCATT
GGACCCAAAATGTCTCAATTTGGATATATCATTTTTCgaaagtttctata
tacccACTCTGACCCCTCCAATTTATTCTCTATTAAATTCTAGATCCAAT
GAGGgttcaacgacctcccaaccgCTATTCAATCGCGCGATATCAcaatt
ttcctgttttgatgacgtcttcaactgaaaacgcctgaaaatttagtcaa
attataaagtcacactcaagcctt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057653-exon-scaffold_297-1491911889:89490..89512 | TCONS_00057653-exon-scaffold_297-1491911889:89490..89512 | Clytia hemisphaerica | exon |
| TCONS_00057653-exon-scaffold_297-1510915933:89490..89512 | TCONS_00057653-exon-scaffold_297-1510915933:89490..89512 | Clytia hemisphaerica | exon |
| TCONS_00057653-exon-scaffold_297-1575043694:89490..89512 | TCONS_00057653-exon-scaffold_297-1575043694:89490..89512 | Clytia hemisphaerica | exon |
| TCONS_00057653-exon-scaffold_297-1491911889:93142..93288 | TCONS_00057653-exon-scaffold_297-1491911889:93142..93288 | Clytia hemisphaerica | exon |
| TCONS_00057653-exon-scaffold_297-1510915933:93142..93288 | TCONS_00057653-exon-scaffold_297-1510915933:93142..93288 | Clytia hemisphaerica | exon |
| TCONS_00057653-exon-scaffold_297-1575043694:93142..93288 | TCONS_00057653-exon-scaffold_297-1575043694:93142..93288 | Clytia hemisphaerica | exon |
| TCONS_00057653-exon-scaffold_297-1491911889:94812..94889 | TCONS_00057653-exon-scaffold_297-1491911889:94812..94889 | Clytia hemisphaerica | exon |
| TCONS_00057653-exon-scaffold_297-1510915933:94812..94889 | TCONS_00057653-exon-scaffold_297-1510915933:94812..94889 | Clytia hemisphaerica | exon |
| TCONS_00057653-exon-scaffold_297-1575043694:94812..94889 | TCONS_00057653-exon-scaffold_297-1575043694:94812..94889 | Clytia hemisphaerica | exon |
| TCONS_00057653-exon-scaffold_297-1491911889:95022..96813 | TCONS_00057653-exon-scaffold_297-1491911889:95022..96813 | Clytia hemisphaerica | exon |
| TCONS_00057653-exon-scaffold_297-1510915933:95022..96813 | TCONS_00057653-exon-scaffold_297-1510915933:95022..96813 | Clytia hemisphaerica | exon |
| TCONS_00057653-exon-scaffold_297-1575043694:95022..96813 | TCONS_00057653-exon-scaffold_297-1575043694:95022..96813 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_297 | supercontig | scaffold_297:89490..96813 + |
Blast
BLAST of TCONS_00057653 vs. Swiss-Prot (Human)
Match: MGT4A (Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A OS=Homo sapiens GN=MGAT4A PE=1 SV=1) HSP 1 Score: 192.2 bits (487), Expect = 7.859e-53 Identity = 114/348 (32.76%), Postives = 190/348 (54.60%), Query Frame = 2
Query: 218 LKLGQKRVGKAFVVFGIPTVKRSKAYYVIQTVSSLLKHMKISERKNVVIVIFVADLDDNFLRKVVKDVRQDFTGEVKDGIIQVVAPDKAYYPKNLDNLPRLFGDEQDRVRWRSKQCLDYSYLYYYCKDMAQYFVQLEDDIIAVDDYMGKMREFITKNEKLRWSVLEFGARGFIGMTYRGEHLESLAKFTRYFFWTMPVDWLFRVYNNIFLYQ--NPKS---------------FRTSEPLFLHIGKFSSLDGQTRSNLIDLPLVGRRRFQLRNGNPPAIIKSDLKDFYMKNFLENPYSKKGAMWSKTPHNGDTITIMFNSTQKVKRIVFVSGLEDYKKDSFYETELYI 1210
+++G R G + +V GIPTVKR Y+I+T+ SL+ ++ E+ + VIV+F+ + D +++ VV ++ ++F+ E+ G+++V++P ++YYP +L NL FGD ++RVRWR+KQ LDY +L Y ++ Y++QLEDDII +Y ++ F + W +LEF GFIG ++ L + +F F+ P+DWL ++I + NP+ FR S LF H+G SSL G+ + L D + ++ + NPPA + + LK Y + LE Y + W+ TP GD I F+ V+ +F SG +++ D T + +
Sbjct: 126 VQIGNGRTGVS-IVMGIPTVKREVKSYLIETLHSLIDNLYPEEKLDCVIVVFIGETDIDYVHGVVANLEKEFSKEISSGLVEVISPPESYYP-DLTNLKETFGDSKERVRWRTKQNLDYCFLMMYAQEKGIYYIQLEDDIIVKQNYFNTIKNFALQLSSEEWMILEFSQLGFIGKMFQAPDLTLIVEFIFMFYKEKPIDWLL---DHILWVKVCNPEKDAKHCDRQKANLRIRFRPS--LFQHVGLHSSLSGKIQ-KLTDKDYMKPLLLKI-HVNPPAEVSTSLK-VYQGHTLEKTYMGEDFFWAITPIAGDYILFKFDKPVNVESYLFHSGNQEHPGDILLNTTVEV 463
The following BLAST results are available for this feature:
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